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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 680 fasta sequence
[GCAAACCNTAACGGCTTAAG-ACTTAAGAAGCGANCCGGCCGGAATGCGGCCGGCGGCGGCGG-TGCCG-CCGGCTGGAA-GGGCAGTCCGGTAC-GGCGTGTTATCGAAAG-CGCTGCCGACAC-GGCTGCACATCAACAGCGGCCGAGGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCC-TTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGG-CGTCACTATTTCCGGGTACTTGTTT-GGGG-CCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAAGAGGCTTGAATTCTGCCAAGACAAGAAGCTTGGATTTGAAGAGTGAAAGAAGAGTACAAGGGTTTAGAAGTAATGTAGTACCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCC-TTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTACTCTTAAAAAAAAAAAAAAA]
[+] EMBL AU076113 [GCAAACCNTAACGGCTTAAG ACTTAAGAAGCGANCCGGCCGGAATGCGGCCGNCGGCGGCGGTTGCCG CCGGCTGGAANGGCCAGTCCGGTAC GGCGTGTTATCGAAAGCCGCTGCCGACACGGGNTGCACATCANCAGCGGCCGAGNTCTCGACATCTCCGA GCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCC TTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGG CGTCACTATTTCCGGGTACTTGTTT GGGG CCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAAGAGGCTTGAATTCTGCCAAGACAAGAAGCTTGGATTTGAAGAGTGAAAGAAGAGTACAAGGGTTTAGAAGTAATGTAGTACCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCC TTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTACTCTTAATAAAAAAAAAAAA]
[+] EMBL AU076112 [ AAACCCTAAC GCCTGAG AACTGAGGAGCGAACCGGCGGGATGGCGG CGGCGGCGGCGG TGGCG GCGGCTGGGA GGGCAGTCCGGTAC GGCGTGTTATCGAAAG CGCTGCCGACAC GGCTGCACATCAACAGCGGCCGAGGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCC TTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGGCCGTCACTATTTCCGGGTACTTGGTT GGGGCCCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAA ]
[+] EMBL AU164020 [ ttgAAGAACTNAAGAAGCGANCCGGCCGGAATGCCGCCGCCGCCGCCGG TGCCGNCGGGCTGGAA GGNCAGTCCGGTACGGGCGTGTTATCGAAAG CGCTGCCGACAC GGCTGCACATCAACAGCGGCCGAGGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCC TTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGG CGTCACTATTTCCGGGTACTTGTTT GGGG CCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAAGAGGCTTGAATTCTGCCAAGACAAGAAGCTTGGATTTGAAGAGTGAAAGAAGAGTACAAGGGTTTAGAAGTAATGTAGTACCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCCTTTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTACTCTTAAAAAAAAA ]
[+] EMBL OSC2521 [ actgAGGAGCGAACCGGCGGGATGGCGG CGGCGGCGGCGG TGGCG GCGGCTGGGA GGGCAGTCCGGTAC GGCGTGTTATCGAAAG CGCTGCCGACAC GGCTGCACATCAACAGCGGCCGAGGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCCTTTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGG CGTCACTATTTCCGGGTACTTGTTTNGGGG CC ]
[-] EMBL CB636685 [ caGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCTTGATCC TTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGG CGTCACTATTTCCGGGTACTTGTTT GGGG CCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAAGAGGCTTGAATTCTGCCAAGACAAGAAGCTTGGATTTGAAGAGTGAAAGAAGAAAAAAAGGGTTTAGAAGTAATGTAGTACCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCC TTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTAAGAATCCCTAATAGTAGAATTACTGTTA ]
[+] EMBL CB680395 [ GAGCCTGATCC TTGACCGCATGAAGAACATTGGCACACACCATACCAAACATGCGTGGATGGTTGCTGG CGTCACTATTTCCGGGTACTTGTTT GGGG CCGCATTCTTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAATAGGCTTGAATTCTGCCAATACAACAAGCTTGGATTTGAACAGTGAAAGAAGACTACAAGGGTTTAGAAGTAATGTACTACCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCC TTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTT ]
[+] EMBL OSC25652 [ AGAGGCTTGAATTCTGCCAAGACAAGAAGCTTGGATTTGAAGAGTGAAAGAAGAGTACAAGGGTTTAGAAGTAATGTAGTACCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCC TTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTACTCTTAAAAAAANAAgnna ]
consensusID : consensus_11907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[GTGTTATCGAAAGCGCTGCCGACACGCTGCACATCAACAGCGCCGAGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCCAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCCTTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGGCGTCACTATTTCCGGGTACTTGTTTGGGGCCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAAGAGGCTTGAATTCTGCCAGACAGAAGCTTGGATTTGAAGAGTGAAAGAAGAGTACAAGGGTTTAGAAGTAATGTAGTGCCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCCTTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTACTCTTAATATGGTTGTCTTGTTTAAAAAA]
[+] EMBL BI797420 [GTGTTATCGAAAGCGCTGCCGACACGCTGCACATCAACAGCGCCGAGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCCAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCCTTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGGCGTCACTATTTCCGGGTACTTGTTTGGGGCCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAAGAGGCTTGAATTCTGCCAGACAGAAGCTTGGATTTGAAGAGTGAAAGAAGAGTACAAGGGTTTAGAAGTAATGTAGTGCCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCCTTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTACTCTTAATATGGTTGTCTTGTTTAAAAAA]
consensusID : consensus_11907#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[TGAGAACTGAGGAGCGAACCGGCGGGATGGCGGCGGCGGCGGCGGTGGCGGCGGCTGGGAGGGCAGTCCGGTACGGCGTGTTATCGAAAGCGCTGCCGACACGGCTGCACATCAACAGCGGCCGAGGTCTCTACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGGTGCGTACTCCTCTCTACCGCAAACCCGCTACTTTGTATGCATACTTCGTTCTTTACATTCGATCCGGTTTACCTCAAGAGGAAGGGGATTAAAAAAAAATTCTGTTCCAAATTAAGTCTCTGAATAGTCAAGTCAAGGTTCCCGGCTACTCCTGATCTGGCTGGCTTTCAATTGAGCAAATAGCCTCCTTTCTAATCACCTTAGCTTGTAATCAAATCTTATTCTACCTAGGGCAGCTGCTGCTTAATTTTCTGCTTTTGATCATCCTGTGTGATGAGTAACCAACCAAATGTTAACCAATTAAACTCACTGGAATCGATTGATTGTTCTTTAACTTCCTCAA]
[+] EMBL CB636684 [TGAGAACTGAGGAGCGAACCGGCGGGATGGCGGCGGCGGCGGCGGTGGCGGCGGCTGGGAGGGCAGTCCGGTACGGCGTGTTATCGAAAGCGCTGCCGACACGGCTGCACATCAACAGCGGCCGAGGTCTCTACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGGTGCGTACTCCTCTCTACCGCAAACCCGCTACTTTGTATGCATACTTCGTTCTTTACATTCGATCCGGTTTACCTCAAGAGGAAGGGGATTAAAAAAAAATTCTGTTCCAAATTAAGTCTCTGAATAGTCAAGTCAAGGTTCCCGGCTACTCCTGATCTGGCTGGCTTTCAATTGAGCAAATAGCCTCCTTTCTAATCACCTTAGCTTGTAATCAAATCTTATTCTACCTAGGGCAGCTGCTGCTTAATTTTCTGCTTTTGATCATCCTGTGTGATGAGTAACCAACCAAATGTTAACCAATTAAACTCACTGGAATCGATTGATTGTTCTTTAACTTCCTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11907#0 GCAAACCNTAACGGCTTAAGACTTAAGAAGCGANCCGGCCGGAATGCGGCCGGCGGCGGC 60
consensus_11907#1 ------------------------------------------------------------
consensus_11907#2 ----------------TGAGAACTGAGGAGCGAACCGGCGGGATGGCGGC-GGCGGCGGC 43
consensus_11907#0 GGTGCCGCCGGCTGGAAGGGCAGTCCGGTACGGCGTGTTATCGAAAGCGCTGCCGACACG 120
consensus_11907#1 ----------------------------------GTGTTATCGAAAGCGCTGCCGACACG 26
consensus_11907#2 GGTGGCGGCGGCTGGGAGGGCAGTCCGGTACGGCGTGTTATCGAAAGCGCTGCCGACACG 103
**************************
consensus_11907#0 GCTGCACATCAACAGCGGCCGAGGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAG 180
consensus_11907#1 -CTGCACATCAACAGCG-CCGAG-TCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAG 83
consensus_11907#2 GCTGCACATCAACAGCGGCCGAGGTCTCTACATCTCCGAGGCTGAGGGCCCTCTCGATAG 163
**************** ***** **** *******************************
consensus_11907#0 GTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGAT 240
consensus_11907#1 GTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGAT 143
consensus_11907#2 GTACATCCAGGTGTTGATG---GTGCGTACTCCTC------TCTACCGCAAACCCGCTAC 214
******************* * * * * * * * * * *
consensus_11907#0 TTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCCTTGAGCGCATGAA 300
consensus_11907#1 TTTGTCCAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCCTTGAGCGCATGAA 203
consensus_11907#2 TTTGTATGCATACTTCGTTCTTTACATTCGATCCG---GTTTA--CCTCAAGAGGAAGGG 269
***** * * * * ** * * * *** ** * * *
consensus_11907#0 GAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGGCGTCACTATTTCCGG 360
consensus_11907#1 GAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGGCGTCACTATTTCCGG 263
consensus_11907#2 GATTAAAAAAAAATTCTGTTCCAAAT-TAAGTCTCTGAATAGTCAAGTCAAGGTTCCCGG 328
** * * * * * * *** * ** ** * * **** ** ****
consensus_11907#0 GTACTTGTTTGGGGCCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGA 420
consensus_11907#1 GTACTTGTTTGGGGCCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGA 323
consensus_11907#2 CTACTCCT----GATCTGGCTGGCTTTCAATTGAGCAAATAGCCTCCTTTCTAATCACCT 384
**** * * * * * * * * ** * ** ** * ** *
consensus_11907#0 AGAGGAGAAAGAGGCTTGAATTCTGCCAAGACAAGAAGCTTGGATTTGAAGAGTGAAAGA 480
consensus_11907#1 AGAGGAGAAAGAGGCTTGAATTCTGCCA-GACA-GAAGCTTGGATTTGAAGAGTGAAAGA 381
consensus_11907#2 TAGCTTGTAATCAAATCTTATTCTACCTAGG---GCAGCTGCTGCTTAATTTTCTGCTTT 441
* ** * ***** ** * * **** ** *
consensus_11907#0 AGAGTACAAGGGTTTAGAAGTAATGTAGTACCTTCCATCCATGCTTAAATTGTTGACTCA 540
consensus_11907#1 AGAGTACAAGGGTTTAGAAGTAATGTAGTGCCTTCCATCCATGCTTAAATTGTTGACTCA 441
consensus_11907#2 TGATCATCCTGTGTGATGAGTAA-----------CCAACCAAATGTTAACC----AATTA 486
** * * * * ***** *** *** * ** * * *
consensus_11907#0 GACCTCCCTTCAACATTTAACTGAGACCCTTTTCCTTTTTTATATATTTCATGTAACTGC 600
consensus_11907#1 GACCTCCCTTCAACATTTAACTGAGACCCTTTTCCTTTTTTATATATTTCATGTAACTGC 501
consensus_11907#2 AACTCACTGGAATCGATTGATTG---TTCTTTAACTTCCTCAA----------------- 526
** * * * ** * ** **** *** * *
consensus_11907#0 AAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTA 660
consensus_11907#1 AAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTA 561
consensus_11907#2 ------------------------------------------------------------
consensus_11907#0 CTCTTAAAAAAAAA---------AAAAAA 680
consensus_11907#1 CTCTTAATATGGTTGTCTTGTTTAAAAAA 590
consensus_11907#2 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||