These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1016 fasta sequence [TTTTTTCACATTTAATACTCCATGTATGTGTCCAATTTTTTTTTTTGATTGGTGAAAAGTTTTTTATTT-GGAAACTAAACAAGGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCC-T-GCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGC-TCCTACTTATATTTCACGTACAATTGTTCC-TGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCT-TGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAATGGAAA-TGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAA-AAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACT-GGATTC-TCTCCAAAGAAAAGGAA-TGTGATGTTGCGC-AATTC-TTCCCAACTGT-ATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGAC-ATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTT-GATGTCCAGTAAAAGAAAGCTACCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGATTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCACTCCAAGTTCTCTAGGGATGATTCCCTTATGTGGAAGCTGATAATGTTTGCCAACCTTTGCACGGAAGACAACCTGACCCGCTGGCACAAGGTTGTCACCGGTCAACTTTACAGCCTCAACATACTCATAGAACTGTAGGTCCCTGTGCTCTTCAGATGAATCATCCTCTCGCCATT] [+] EMBL CF312665 [TTTTTTCACATTTAATACTCCATGTATGTGTCCAAACATTTGATGTGATTGGTGAAAAGTTTTTTTTTT GGAAACTAAACAAGGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTAT CCCCCC T GCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGT TCCTACTTATATTTCACGTACAATTGTTCC TGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCT TGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAAAGGAAA TGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAA AAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACT GGATTC TCTCCAAAGAAAAGGAA TGTGATGTTGCGC AATTC TTCCCAACTGT ATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGAC ATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTT ] [+] EMBL CA761610 [ ttttttTTTCTTTTTTTGATTGGAGAAAAATTTTTTATTT GGAAACTAAACAAGGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCC T GCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGC TCCTACTTATATTTCACGTACAATTGTTCC TGTGTGATATGGCTCGAAAAAGCATCAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCT TGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAATGGAAA TGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAC AAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGACCTCATTCCACT GGATTC TCTCCAAAGACAAGGAA TGTGATGTTGCGC AATTC TTCCCAACTGT ATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGAC ATGCCAAATTGGGGAATGGC CTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCACCCGGCTAAGGAATTCCAAAAGATGAAAGTTTGGATGTCCAGTCGAAAAAAGGTACCA AGG ] [-] EMBL BI807695 [ TTTTTTTTTTGGATGGGTGAAAAGTTTTTTATTTGGGAAACTAAACAAGGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCCGTGGCTACGGGTGGGATTTACAAAACACGAAGTGCCCGTTATTACCATCGGTTGAATTATTTGATCACACGGGCCAAAACGGCGTCCTACTTATATTTCACGTACAATGGTTCCGTGTGTGATATGG TCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTGGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTGTGGACCTGG CTCCAA TCCAAACCGGGTTGGTGAGCTGAATGGAAATTGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAACAAGTGG ATCTTCCAGTGAGATTGGAGATGCCGGCGCTCAAGTCCTCATTCCACTGGGATTCTTCTCCAAAGAAAAGGAACTGTGATGTTTGGCAAATTC TTCCCAAGTGTGATTTTTTAACGAAGA ] [+] EMBL CB633487 [ tcTTTTTT TTGGTGAAAAGTTTTTTATTT GGAAACTAAACAACGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCC T GCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGC TCCTACTTATATTTCACGTACAATTGTTCC TGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCT TGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAATGGAAA TGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAA AAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACT GGATTC TCTCCAAAGAAAAGGAA TGTGATGTTGCGC AATTC TTCCCAACTGT ATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGAC ATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTT GATGTCCAGTAAAAGAAAGCTATCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGATTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCACTCCAAGTTCTCTAGGGA ] [-] EMBL CA764724 [ AAAAATTTTTTATTT GGAAACTAACCAAGGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCC T GCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGC TCCTACTTATATTTCACGTACAATTGTTCC TGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCT TGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAATGGAAA TGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAA AAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACT GGATTC TCTCCAAAGAAAAGGAA TGTGATGTTGCGC AATTC TTCCCAACTGT ATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGAC ATGCAAGATTGTGGAATGGC CTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTT GATGTCCAGTAAAAGAAAGCTATCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGATTTTGGAAACCTGGATCTGCAAT ] [-] EMBL CF312664 [ CCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACT GGATTC TCTCCAAAGAAAAGGAA TGTGATGTTGCGC AATTCTTTCCCAACTGT ATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGACAATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTT GATGTCCAGTAAAAGAAAGCTACCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGGTTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCACTCCAAGTTCTCTAGGGATGATTCCCTTATGTGGAAGCTGATAATGTTTGCCAACCTTTGCACGGAAGACAACCTGACCCGCTGGCACAAGGTTGTCACCGGTCAACTTTACAGCCTCAACATACTCATAGAACTGTAGGTCCCTGTGCTCTTCAGATGAATCATCCTCTCGCCATT] consensusID : consensus_11909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 833 fasta sequence [TTTTTTTTCTTTTTNTTTTTTTTTTTTTTTTTTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCTGCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGTTCCTACTTATATTTCACGTACAATTGTTCCTGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTTGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAAAGGAAATGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAAAAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACTGGATTCTCTCCAAAAAAAAGGAATGTGATGTTGCGCAATTCTTCCCAACTGTATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGACATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTTGATGTCCAGTAAAAGAAAGCTATCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGGTTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCACTCCAAGTTCTCTAGGGATGATTCCCTTATGTGGAAGCTGATAATGTTTGCCA] [-] EMBL AU057051 [TTTTTTTTCTTTTTNTTTTTTTTTTTTTTTTTTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCTGCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGTTCCTACTTATATTTCACGTACAATTGTTCCTGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTTGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAAAGGAAATGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAAAAGTGGCATCTTCCAGTGAGATTGGAGATGCCG ] [+] EMBL CB655796 [ tccTTTTTTTTTTTTTC ACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCTGCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGTTCCTACTTATATTTCACGTACAATTGTTCCTGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTTGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAAAGGAAATGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAAAAGTGGCATCTTCCAGTGAAATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACTGGATTCTCTCCAAAAAAAAGGAATGTGATGTTGCGCAATTCTTCCCAACTGTATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGACATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTTGATGTCCAGTAAAAGAAAGCTATCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGGTTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCACTCCAAGTTCTCTAGGGATGATTCCCTTATGTGGAAGCTGATAATGTTTGCCA] [+] EMBL CB650785 [ TTTTTCAACAAAATTCATGCTGAGTTATATATCCTTACACAGCAGTTATCCCCCCTGCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGTTCCTACTTATATTTCACGTACAATTGTTCCTGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTTGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAAAGGAAATGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAAAAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACTGGATTCTCTCCAAAAAAAAGGAATGTGATGTTGCGCAATTCTTCCCAACTGTATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGACATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTTGATGTCCAGTAAAAGAAAGCTATCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGGTTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCACTCCAAGTTCTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11909#0 TTTTTTCACATTTAATACTCCATGTATGTGTCCAATTTTTTTTTTTGATTGGTGAAAAGT 60 consensus_11909#1 -------------------------------------TTTTTTTTCTTTTTNTTTTTTTT 23 ******** ** * * consensus_11909#0 TTTTTATTTGGAAACTAAACAAGGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATA 120 consensus_11909#1 TTTTTTTTT---------------------TTCAACAAAATTCATGCTGAGTTATATATA 62 ***** *** ****************************** consensus_11909#0 TACACACAGCAGTTATCCCCCCCTGCTACTGGTTGGATTTACAAAACACGAAGTGCCCGT 180 consensus_11909#1 TACACACAGCAGTTATCCCCCC-TGCTACTGGTTGGATTTACAAAACACGAAGTGCCCGT 121 ********************** ************************************* consensus_11909#0 TATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGCTCCTACTTATATTTCA 240 consensus_11909#1 TATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGTTCCTACTTATATTTCA 181 ******************************************* **************** consensus_11909#0 CGTACAATTGTTCCTGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAAT 300 consensus_11909#1 CGTACAATTGTTCCTGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAAT 241 ************************************************************ consensus_11909#0 TCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTTGGAC 360 consensus_11909#1 TCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTTGGAC 301 ************************************************************ consensus_11909#0 CTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAATGGAAATGGAACAACGAGTTCACT 420 consensus_11909#1 CTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAAAGGAAATGGAACAACGAGTTCACT 361 ************************************ *********************** consensus_11909#0 CTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAAAAGTGGCATCTTCCAGTGAGATTGG 480 consensus_11909#1 CTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAAAAGTGGCATCTTCCAGTGAGATTGG 421 ************************************************************ consensus_11909#0 AGATGCCGCCGCTCAAGTCCTCATTCCACTGGATTCTCTCCAAAGAAAAGGAATGTGATG 540 consensus_11909#1 AGATGCCGCCGCTCAAGTCCTCATTCCACTGGATTCTCTCCAAAAAAAAGGAATGTGATG 481 ******************************************** *************** consensus_11909#0 TTGCGCAATTCTTCCCAACTGTATTTTTTAACGAAGACGATTATGTACATTCTGTTATGT 600 consensus_11909#1 TTGCGCAATTCTTCCCAACTGTATTTTTTAACGAAGACGATTATGTACATTCTGTTATGT 541 ************************************************************ consensus_11909#0 ACATCGACATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGG 660 consensus_11909#1 ACATCGACATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGG 601 ************************************************************ consensus_11909#0 AAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTTGATGTCCAGTAAAAGAAAGC 720 consensus_11909#1 AAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTTGATGTCCAGTAAAAGAAAGC 661 ************************************************************ consensus_11909#0 TACCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCA 780 consensus_11909#1 TATCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCA 721 ** ********************************************************* consensus_11909#0 ACGAGGATTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCAC 840 consensus_11909#1 ACGAGGGTTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCAC 781 ****** ***************************************************** consensus_11909#0 TCCAAGTTCTCTAGGGATGATTCCCTTATGTGGAAGCTGATAATGTTTGCCAACCTTTGC 900 consensus_11909#1 TCCAAGTTCTCTAGGGATGATTCCCTTATGTGGAAGCTGATAATGTTTGCCA-------- 833 **************************************************** consensus_11909#0 ACGGAAGACAACCTGACCCGCTGGCACAAGGTTGTCACCGGTCAACTTTACAGCCTCAAC 960 consensus_11909#1 ------------------------------------------------------------ consensus_11909#0 ATACTCATAGAACTGTAGGTCCCTGTGCTCTTCAGATGAATCATCCTCTCGCCATT 1016 consensus_11909#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||