cluster # 11927

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Oryza sativa
cluster # 11927 cluster # 11927 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11927#0 length = 1735 sequences # 5

consensus_11927#1 length = 1318 sequences # 3
consensus_11927#2 length = 552 sequences # 1

consensusID : consensus_11927#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1735
fasta sequence

                              [CTCGTGCCGAACGAGGTCTCTCTTCTCAGTCCTCCCTCTCCTTTCCCTTCTGGTGCAGAGCACGTGTAGGCCCTACCTAACGAGGAACATGTGAAGTTGTGACCCAAATTGACTATGTGATCTTGAAGAGTTGTGTGATTAGACGACGTGGATATAAATATTTGGTTTTCGGTGTTGAGGTAAACGCCTCCTCTGTTGAAAAAGAGTACACAGACTCTCGTCTGGATTCTGGATCTGGATCTGGATCTGATCCAACTCCCACCCAACTCTCCAAGTACGGCAGCAGCACTGGCTACTGCGGAGGAGGCGTTGCGACTTGCGAGTGGCGGAGGACTAGGAAGTCGCCTCCGCCTCCGCTGCAGACACACTGGCGATGGCTTCCTCCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAGAAAGCAGCCCTAGCTACAGGCGGAGGAGGAGGGACCACTGGAGGAATGCTGGGCACAATAATGTGCATCGCAAGGGAGGAAGGGGTGGCCGCGCTTTGGAACGGCATCATCCCTGGCCTTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTGTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGTTTATTTGCTAAGATCCTTGCTGCTCTTATGACAGCCAACCAGTTTACATCCAAATTTCATGTGTTAAGGACTTAAGGTAGGTGCACTATGCACAAGTAAATATACTCTTATATTAATTACCGTTCTATATATTCATAGGTGTCATAGCAATTGTTGTGGCAAATCCAACTGATCTTGTCAAAGTGAGATTGCAAGCTGATGGAAAGGCCACCACTGTCAAGAGGCACTATTCTGGAGCCCTCAATGCGTATGCTACCATAATCAGACAGGAAGGTATTGGAGCTTTGTGGACTGGCCTCGGTCCAAACATAGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGCTGGACTTGGTGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGATGGGTGACGCAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGATCTATCATGCAAGTGAACAGCAGGAGCAGGACTGAATCGATGCTTGATTTAGCTGTAGCTCCTGAGTCCACTTTATAGTGCTGTTTGCTGAAGGCCACATATGTCTAGGATTAGATTTGTTTTGTACAGGACAATGCGTTCTAATTAAACCCATCAATTCAGCAGAGGACAACATCAACAGAGTCATTTGTGCAGAGATGATTGGCCATAACATGTCATTGTACTGTCTGAGCAATTTTTTAATTTTACCAAAAATGAAACTCACAAAATCTAATGCAAATATAGGTTACTCTTGGTAGTAATTTCATGTATCCGAGGTTTGTAAACAATATGAAAGGAAGTTGTGACTTAAACTTGATTTAGAATAAAAAAAAAAGAACAAAAATAAAAAAAAAAAAA]

[+] EMBL CF323859             [CTCGTGCCGAACGAGGTCTCTCTTCTCAGTCCTCCCTCTCCTTTCCCTTCTGGTGCAGAGCACGTGTAGGCCCTACCTAACGAGGAACATGTGAAGTTGTGACCCAAATTGACTATGTGATCTTGAAGAGTTGTGTGATTAGACGACGTGGATATAAATATTTGGTTTTCGGTGTTGAGGTAAACGCCTCCTCTGTTGAAAAAGAGTACACAGACTCTCGTCTGGATTCTGGATCTGGATCTGGATCTGATCCAACTCCCACCCAACTCTCCAAGTACGGCAGCAGCACTGGCTACTGCGGAGGAGGCGTTGCGACTTGCGAGTGGCGGAGGACTANGAAGTCGCCTCCGCCTCCGCTGCAGACACACTGGCGATGGCTTCCTCCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAGAAAGCAGCCCTAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK103874             [                                                                                                                                                                                                                                                    ATCTGATCCAACTCCCACCCAACTCTCCAAGTACGGCAGCAGCACTGGCTACTGCGGAGGAGGCGTTGCGACTTGCGAGTGGCGGAGGACTAGGAAGTCGCCTCCGCCTCCGCTGCAGACACACTGGCGATGGCTTCCTCCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAGAAAGCAGCCCTAGCTACAGGCGGAGGAGGAGGGACCACTGGAGGAATGCTGGGCACAATAATGTGCATCGCAAGGGAGGAAGGGGTGGCCGCGCTTTGGAACGGCATCATCCCTGGCCTTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTGTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGTTTATTTGCTAAGATCCTTGCTGCTCTTATGACAGCCAACCAGTTTACATCCAAATTTCATGTGTTAAGGACTTAAGGTAGGTGCACTATGCACAAGTAAATATACTCTTATATTAATTACCGTTCTATATATTCATAGGTGTCATAGCAATTGTTGTGGCAAATCCAACTGATCTTGTCAAAGTGAGATTGCAAGCTGATGGAAAGGCCACCACTGTCAAGAGGCACTATTCTGGAGCCCTCAATGCGTATGCTACCATAATCAGACAGGAAGGTATTGGAGCTTTGTGGACTGGCCTCGGTCCAAACATAGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGCTGGACTTGGTGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGATGGGTGACGCAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGATCTATCATGCAAGTGAACAGCGGGAGCAGGACTGAATCGATGCTTGATTTAGCTGTAGCTCCTGAGTCCACTTTATAGTGCTGTTTGCTGAAGGCCACATATGTCTAGGATTAGATTTGTTTTGTACAGGACAATGCGTTCTAATTAAACCCATCAATTCAGCAGAGGACAACATCAACAGAGTCATTTGTGCAGAGATGATTGGCCATAACATGTCATTGTACTGTCTGAGCAATTTTTTAATTTTACCAAAAATGAAACTCACAAAATCTAATGCAAATATAGGTTACTCTTGGTAGTAATTTCATGTATCCGAGGTTTGTAAACAATATGAAAGGAA                                                           ]
[+] EMBL AK102326             [                                                                                                                                                                                                                                                                                                                   CGTTGCGACTTGCGAGTGGCGGAGGACTAGGAAGTCGCCTCCGCCTCCGCTGCAGACACACTGGCGATGGCTTCCTCCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAGAAAGCAGCCCTAGCTACAGGCGGAGGAGGAGGGACCACTGGAGGAATGCTGGGCACAATAATGTGCATCGCAAGGGAGGAAGGGGTGGCCGCGCTTTGGAACGGCATCATCCCTGGCCTTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTGTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGTTTATTTGCTAAGATCCTTGCTGCTCTTATGACAGCCAACCAGTTTACATCCAAATTTCATGTGTTAAGGACTTAAGGTAGGTGCACTATGCACAAGTAAATATACTCTTATATTAATTACCGTTCTATATATTCATAGGTGTCATAGCAATTGTTGTGGCAAATCCAACTGATCTTGTCAAAGTGAGATTGCAAGCTGATGGAAAGGCCACCACTGTCAAGAGGCACTATTCTGGAGCCCTCAATGCGTATGCTACCATAATCAGACAGGAAGGTATTGGAGCTTTGTGGACTGGCCTCGGTCCAAACATAGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGCTGGACTTGGTGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGATGGGTGACGCAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGATCTATCATGCAAGTGAACAGCAGGAGCAGGACTGAATCGATGCTTGATTTAGCTGTAGCTCCTGAGTCCACTTTATAGTGCTGTTTGCTGAAGGCCACATATGTCTAGGATTAGATTTGTTTTGTACAGGACAATGCGTTCTAATTAAACCCATCAATTCAGCAGAGGACAACATCAACAGAGTCATTTGTGCAGAGATGATTGGCCATAACATGTCATTGTACTGTCTGAGCAATTTTTTAATTTTACCAAAAATGAAACTCACAAAATCTAATGCAAATATAGGTTACTCTTGGTAGTAATTTCATGTATCCGAGGTTTGTAAACAATATGAAAGGAAGTTGTGACTTAAACTTG                                          ]
[+] EMBL BE530945             [                                                                                                                                                                                                                                                                                                                                             CTAGGAAGTCGCCTCCGCCTCCGCTGCAGACACACTGGCGATGGCTTCCTCCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAGAAAGCAGCCCTAGCTACAGGCGGAGGAGGAGGGACCACTGGAGGAATGCTGGGCACAATAATGTGCATCGCAAGGGAGGAAGGGGTGGCCGCGCTTTGGAACGGCATCATCCCTGGCCTTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTGTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGTTTATTTGCTAAGATCCTTGCTGCTCTTATGACAGCCAACCAGTTTACATCCAAATTTCATGTGTTAAGGACTTAAGGTAGGTGCACTATGCACAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CF312669             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGGGCTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGATCTATCATGCAAGTGAACAGCAGGAGCAGGACTGAATCGACGCTTGATTTAGCTGTAGCTCCTGAGTCCCCTTTATAGTGCTGTTTGCTGAAGGCCACATATGTCTAGGATTAGATTTGTTTTGTACAGGTCAATGCGTTCTAATTAAACCCATCAATTCAGCAGAGGGCAACATCAACATAGTCATTTGTGCAGAGATGATTGGCCATAACATGTCCTTGTACTGTTTGAGCAATTTTTTTATTTTACCAAAAATGAAACTCTCAAAATGTAATGCAAATATAGGTTACTCTTGGTAGTAATTTCAAGTATCCGAGGTTTGTAAACAATATGAAAGGAAGTTGTGAATTAAAAATGATTTAGAATAAAAAAAAAAGAACAAAAATAAAAAAAAAAAAA]




>consensus_11927#0
CTCGTGCCGAACGAGGTCTCTCTTCTCAGTCCTCCCTCTCCTTTCCCTTCTGGTGCAGAG
CACGTGTAGGCCCTACCTAACGAGGAACATGTGAAGTTGTGACCCAAATTGACTATGTGA
TCTTGAAGAGTTGTGTGATTAGACGACGTGGATATAAATATTTGGTTTTCGGTGTTGAGG
TAAACGCCTCCTCTGTTGAAAAAGAGTACACAGACTCTCGTCTGGATTCTGGATCTGGAT
CTGGATCTGATCCAACTCCCACCCAACTCTCCAAGTACGGCAGCAGCACTGGCTACTGCG
GAGGAGGCGTTGCGACTTGCGAGTGGCGGAGGACTAGGAAGTCGCCTCCGCCTCCGCTGC
AGACACACTGGCGATGGCTTCCTCCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGC
CTGCTTCGCTGAGGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCA
AAAGAAAGCAGCCCTAGCTACAGGCGGAGGAGGAGGGACCACTGGAGGAATGCTGGGCAC
AATAATGTGCATCGCAAGGGAGGAAGGGGTGGCCGCGCTTTGGAACGGCATCATCCCTGG
CCTTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTGTGAAAGC
CTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGTTTATTTGCTAAGATCCT
TGCTGCTCTTATGACAGCCAACCAGTTTACATCCAAATTTCATGTGTTAAGGACTTAAGG
TAGGTGCACTATGCACAAGTAAATATACTCTTATATTAATTACCGTTCTATATATTCATA
GGTGTCATAGCAATTGTTGTGGCAAATCCAACTGATCTTGTCAAAGTGAGATTGCAAGCT
GATGGAAAGGCCACCACTGTCAAGAGGCACTATTCTGGAGCCCTCAATGCGTATGCTACC
ATAATCAGACAGGAAGGTATTGGAGCTTTGTGGACTGGCCTCGGTCCAAACATAGCACGC
AATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGCTGGACTTG
GTGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGA
TGGGTGACGCAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATG
GACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATG
TGATAATGTTTTTAACACTGGAGCAGGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTG
CACTGCAAGCCAAGGATCTATCATGCAAGTGAACAGCAGGAGCAGGACTGAATCGATGCT
TGATTTAGCTGTAGCTCCTGAGTCCACTTTATAGTGCTGTTTGCTGAAGGCCACATATGT
CTAGGATTAGATTTGTTTTGTACAGGACAATGCGTTCTAATTAAACCCATCAATTCAGCA
GAGGACAACATCAACAGAGTCATTTGTGCAGAGATGATTGGCCATAACATGTCATTGTAC
TGTCTGAGCAATTTTTTAATTTTACCAAAAATGAAACTCACAAAATCTAATGCAAATATA
GGTTACTCTTGGTAGTAATTTCATGTATCCGAGGTTTGTAAACAATATGAAAGGAAGTTG
TGACTTAAACTTGATTTAGAATAAAAAAAAAAGAACAAAAATAAAAAAAAAAAAA

consensusID : consensus_11927#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1318
fasta sequence

                              [ACACAGACCTTTCGACTGGATTCTGGATCTGGATCTGGATCTGATCCAACTCCCACCCAACTCTCCAAGTACGGCAGCAGCACTGGCTACTGCGGAGGAGGCGTTGCGACTTGCGAGTGGCGGAGGACTAGGAAGTCGCCTCCGCCTCCGCTGCAGACACCCTGGCCTTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTGTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGTTTATTTGCTAAGATCCTTGCTGCTCTTATGACAGCCAACCAGTTTACATCCAAATTTCATGTGTTAAGGACTTAAGGTAGGTGCACTATGCACAAGTAAATATACTCTTATATTAATTACCGGTCTATATATTCATAGGTGTCATAGCAATTGTTGTGGCAAATCCAACTGATCTTGTCAAAGTGAGATTGCAAGCTGATGGAAAGGCCACCACTGTCAAGAGGCACTATTCTGGAGCCCTCAATGCGTATGCTACCATAATCATACAGGAAGGTATTGGAGCTTTGTGGACTGGCCTCGGTCCAAACATAGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTAGCTGGACTTGGTGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGATGGGTGACGCAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGGTAAGAAGATCAATTCTGTAAGTCTGCTGCAATACACTGCAAGCCAAGGATCTATCATGCAAGTGAACAGCAGGAGCAGGACTGAATCGATGCTTGATTTAGCTGTAGCTCCTGAGTCCACTTTATAGTGCTGTTTGCTGAAGGCCACATATGTCTAGGATTAGATTTGTTTTGTACAGGACAATGCGTTCTAATTAAACCCATCAATTCAGCAGAGGACAACATCAACAGAGTCATTTGTGCAGAGATGATTGGCCATAACATGTCATTGTACTGTCTGAGCAATTTTTTAATTTTACCAAAAATGAAACTCACAAATTTTAAGGCAAATATAGGTTACTCTTGGTAGTAATTTCATGTATCCGAGGTTTGTAAACAATATGAAAGGAAGTTGTGACTTAAACTTGCTTTTGCA]

[+] EMBL CB660265             [ACACAGACCTTTCGACTGGATTCTGGATCTGGATCTGGATCTGATCCAACTCCCACCCAACTCTCCAAGTACGGCAGCAGCACTGGCTACTGCGGAGGAGGCGTTGCGACTTGCGAGTGGCGGAGGACTAGGAAGTCGCCTCCGCCTCCGCTGCAGACACCCTGGCCTTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTGTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGTTTATTTGCTAAGATCCTTGCTGCTCTTATGACAGCCAACCAGTTTACATCCAAATTTCATGTGTTAAGGACTTAAGGTAGGTGCACTATGCACAAGTAAATATACTCTTATATTAATTACCGGTCTATATATTCATAGGTGTCATAGCAATTGTTGTGGCAAATCCAACTGATCTTGTCAAAGTGAGATTGCAAGCTGATGGAAAGGCCACCACTGTCAAGAGGCACTATTCTGGAGCCCTCAATGCGTATGCTACCATAATCATACAGGAAGGTATTGGAGCTTTGTGGACTGGCCTCGGTCCAAACATAGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTACCTGGACTTGGTGCTGGATTTTTTGCTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB660266             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAGGAAGGTATTGGAGCTTTGTGGACTGGCCTCGGTCCAAACATAGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTAGCTGGACTTGGTGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGATGGGTGACGCAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGGTAAGAAGATCAATTCTGTAAGTCTGCTGCAATACACTGCAAGCCAAGGATCTATCATGCAAGTGAACAGCAGGAGCAGGACTGAATCGATGCTTGATTTAGCTGTAGCTCCTGAGTCCACTTTATAGTGCTGTTTGCTGAAGGCCACATATGTCTAGGATTAGATTTGTTTTGTACAGGACAATGCGTTCTAATTAAACCCATCAATTCAGCAGAGGACAACATCAACAGAGTCATTTGTGCAGAGATGATTGGCCATAACATGTCATTGTACTGTCTGAGCAATTTTTTAATTTTACCAAAAATGAAACTCACAAATTTTAAGGCAAATATAGGTTACTCTTGGT                                                                    ]
[-] EMBL CB678991             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGAAGGTATTGGAGCTTTGTGGACTGGCCTCGGTCCAAACATAGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTAGCTGGACTTGGTGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGATGGGTGACGCAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGATCTATCATGCAAGTGAACAGCAGGAGCAGGACTGAATCGATGCTTGATTTAGCTGTAGCTCCTGAGTCCACTTTATAGTGCTGTTTGCTGAAGGCCACATATGTCTAGGATTAGATTTGTTTTGTACAGGACAATGCGTTCTAATTAAACCCATCAATTCAGCAGAGGACAACATCAACAGAGTCATTTGTGCAGAGATGATTGGCCATAACATGTCATTGTACTGTCTGAGCAATTTTTTAATTTTACCAAAAATGAAACTCACAAAATCTAATGCAAATATAGGTTACTCTTGGTAGTAATTTCATGTATCCGAGGTTTGTAAACAATATGAAAGGAAGTTGTGACTTAAACTTGCTTTTGCA]




>consensus_11927#1
ACACAGACCTTTCGACTGGATTCTGGATCTGGATCTGGATCTGATCCAACTCCCACCCAA
CTCTCCAAGTACGGCAGCAGCACTGGCTACTGCGGAGGAGGCGTTGCGACTTGCGAGTGG
CGGAGGACTAGGAAGTCGCCTCCGCCTCCGCTGCAGACACCCTGGCCTTCACCGCCAGTG
CGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTGTGAAAGCCTTCTTTATCCGAGA
CGGAGATACTGTTGCTGGTGGTGTCAGTTTATTTGCTAAGATCCTTGCTGCTCTTATGAC
AGCCAACCAGTTTACATCCAAATTTCATGTGTTAAGGACTTAAGGTAGGTGCACTATGCA
CAAGTAAATATACTCTTATATTAATTACCGGTCTATATATTCATAGGTGTCATAGCAATT
GTTGTGGCAAATCCAACTGATCTTGTCAAAGTGAGATTGCAAGCTGATGGAAAGGCCACC
ACTGTCAAGAGGCACTATTCTGGAGCCCTCAATGCGTATGCTACCATAATCATACAGGAA
GGTATTGGAGCTTTGTGGACTGGCCTCGGTCCAAACATAGCACGCAATGCTATAATTAAT
GCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGATGTTTCTAAAACTTCCTGGGTTT
ACTGATAACGTTTTTACCCATCTTTTAGCTGGACTTGGTGCTGGATTTTTTGCTGTTTGC
ATTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGATGGGTGACGCAACGTACAAGAGT
ACACTAGACTGTTTTGCAAAGACATTAAAGAATGATGGACTTCCTGCTTTTTATAAAGGG
TTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAG
CAGGTAAGAAGATCAATTCTGTAAGTCTGCTGCAATACACTGCAAGCCAAGGATCTATCA
TGCAAGTGAACAGCAGGAGCAGGACTGAATCGATGCTTGATTTAGCTGTAGCTCCTGAGT
CCACTTTATAGTGCTGTTTGCTGAAGGCCACATATGTCTAGGATTAGATTTGTTTTGTAC
AGGACAATGCGTTCTAATTAAACCCATCAATTCAGCAGAGGACAACATCAACAGAGTCAT
TTGTGCAGAGATGATTGGCCATAACATGTCATTGTACTGTCTGAGCAATTTTTTAATTTT
ACCAAAAATGAAACTCACAAATTTTAAGGCAAATATAGGTTACTCTTGGTAGTAATTTCA
TGTATCCGAGGTTTGTAAACAATATGAAAGGAAGTTGTGACTTAAACTTGCTTTTGCA

consensusID : consensus_11927#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence

                              [AATTCGCCCTTGACTGGACTGAAGGAGTAGAAATATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGTTTATTTGCTAAGATCCTTGCTGCTCTTATGACAGGTGTCATAGCAATTGTTGTGGCAAATCCAACTGATCTTGTCAAAGTGAGATTGCAAGCTGATGGAAAGGCCACCACTGTCAAGAGGCACTATTCTGGAGCCCTCAATGCGTATGCTACCATAATCAGACAGGAAGGTATTGGAGCTTTGTGGACTGGCNCTCGGTCCAAACATAGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTAGCTGGACTTGGTGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGATGGGTGACGCAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATGGACTTCCTGCTTTTTATAAGGGTTCATTGCAAACTT]

[+] EMBL CF312668             [AATTCGCCCTTGACTGGACTGAAGGAGTAGAAATATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGTTTATTTGCTAAGATCCTTGCTGCTCTTATGACAGGTGTCATAGCAATTGTTGTGGCAAATCCAACTGATCTTGTCAAAGTGAGATTGCAAGCTGATGGAAAGGCCACCACTGTCAAGAGGCACTATTCTGGAGCCCTCAATGCGTATGCTACCATAATCAGACAGGAAGGTATTGGAGCTTTGTGGACTGGCNCTCGGTCCAAACATAGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTAGCTGGACTTGGTGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGATGGGTGACGCAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATGGACTTCCTGCTTTTTATAAGGGTTCATTGCAAACTT]




>consensus_11927#2
AATTCGCCCTTGACTGGACTGAAGGAGTAGAAATATCCGAGACGGAGATACTGTTGCTGG
TGGTGTCAGTTTATTTGCTAAGATCCTTGCTGCTCTTATGACAGGTGTCATAGCAATTGT
TGTGGCAAATCCAACTGATCTTGTCAAAGTGAGATTGCAAGCTGATGGAAAGGCCACCAC
TGTCAAGAGGCACTATTCTGGAGCCCTCAATGCGTATGCTACCATAATCAGACAGGAAGG
TATTGGAGCTTTGTGGACTGGCNCTCGGTCCAAACATAGCACGCAATGCTATAATTAATG
CTACCGAGTTGGCCAGCTACGACCAACTCAAACAGATGTTTCTAAAACTTCCTGGGTTTA
CTGATAACGTTTTTACCCATCTTTTAGCTGGACTTGGTGCTGGATTTTTTGCTGTTTGCA
TTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGATGGGTGACGCAACGTACAAGAGTA
CACTAGACTGTTTTGCAAAGACATTAAAGAATGATGGACTTCCTGCTTTTTATAAGGGTT
CATTGCAAACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11927#0      CTCGTGCCGAACGAGGTCTCTCTTCTCAGTCCTCCCTCTCCTTTCCCTTCTGGTGCAGAG 60
consensus_11927#1      ------------------------------------------------------------
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      CACGTGTAGGCCCTACCTAACGAGGAACATGTGAAGTTGTGACCCAAATTGACTATGTGA 120
consensus_11927#1      ------------------------------------------------------------
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      TCTTGAAGAGTTGTGTGATTAGACGACGTGGATATAAATATTTGGTTTTCGGTGTTGAGG 180
consensus_11927#1      ------------------------------------------------------------
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      TAAACGCCTCCTCTGTTGAAAAAGAGTACACAGACTCTCGTCTGGATTCTGGATCTGGAT 240
consensus_11927#1      ------------------------------------------------------------
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      CTGGATCTGATCCAACTCCCACCCAACTCTCCAAGTACGGCAGCAGCACTGGCTACTGCG 300
consensus_11927#1      ------------------------------------------------------------
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      GAGGAGGCGTTGCGACTTGCGAGTGGCGGAGGACTAGGAAGTCGCCTCCGCCTCCGCTGC 360
consensus_11927#1      ------------------------------------------------------------
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      AGACACACTGGCGATGGCTTCCTCCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGC 420
consensus_11927#1      -----------------------------------------------------ACACAGA 7
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      CTGCTTCGCTGAGGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCA 480
consensus_11927#1      CCTTTCGACTGGATTCTGGATC-TGGATCTGGATCTGATCCAACTCCCACCCAACTCTCC 66
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      AAA---GAAAGCAGCCCTAGCTACAGGCGGAGGAGGAGGGACCACTGGAGGAATGCTGGG 537
consensus_11927#1      AAGTACGGCAGCAGCACTGGCTACTG-CGGAGGAGGCGTTGCGACT-------------- 111
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      CACAATAATGTGCATCGCAAGGGAGGAAGGGGTGGCCGC-GCTTTGGAACGGCATCATCC 596
consensus_11927#1      --------TGCGAGTGGCGGAGGACTAGGAAGTCGCCTCCGCCTCCG--CTGCAGACACC 161
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      CTGGCCTTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTGTGA 656
consensus_11927#1      CTGGCCTTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTGTGA 221
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      AAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGTTTATTTGCTAAGA 716
consensus_11927#1      AAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGTTTATTTGCTAAGA 281
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      TCCTTGCTGCTCTTATGACAGCCAACCAGTTTACATCCAAATTTCATGTGTTAAGG-ACT 775
consensus_11927#1      TCCTTGCTGCTCTTATGACAGCCAACCAGTTTACATCCAAATTTCATGTGTTAAGG-ACT 340
consensus_11927#2      -----------------------AATTCGCCCTTGACTGGACTGAAGGAGTAGAAATATC 37
                                              **   *       *   * *  * * **  *   *  

consensus_11927#0      TAAGGTAGGTGCACTATGCACAAGTAAATATACTCTTATATTAATTACCGTTCTATATAT 835
consensus_11927#1      TAAGGTAGGTGCACTATGCACAAGTAAATATACTCTTATATTAATTACCGGTCTATATAT 400
consensus_11927#2      CGAGACGGAGATACTGTTGCTGGTGGTGTCAGTTTATTTGCTAAGATCCTTGCTGCTCTT 97
                         **   *    *** *           *    *  * *  ***   **   **     *

consensus_11927#0      -TCATAGGTGTCATAGCAATTGTTGTGGCAAATCCAACTGATCTTGTCAAAGTGAGATTG 894
consensus_11927#1      -TCATAGGTGTCATAGCAATTGTTGTGGCAAATCCAACTGATCTTGTCAAAGTGAGATTG 459
consensus_11927#2      ATGACAGGTGTCATAGCAATTGTTGTGGCAAATCCAACTGATCTTGTCAAAGTGAGATTG 157
                        * * *******************************************************

consensus_11927#0      CAAGCTGATGGAAAGGCCACCACTGTCAAGAGGCACTATTCTGGAGCCCTCAATGCGTAT 954
consensus_11927#1      CAAGCTGATGGAAAGGCCACCACTGTCAAGAGGCACTATTCTGGAGCCCTCAATGCGTAT 519
consensus_11927#2      CAAGCTGATGGAAAGGCCACCACTGTCAAGAGGCACTATTCTGGAGCCCTCAATGCGTAT 217
                       ************************************************************

consensus_11927#0      GCTACCATAATCAGACAGGAAGGTATTGGAGCTTTGTGGACTGGCC-TCGGTCCAAACAT 1013
consensus_11927#1      GCTACCATAATCATACAGGAAGGTATTGGAGCTTTGTGGACTGGCC-TCGGTCCAAACAT 578
consensus_11927#2      GCTACCATAATCAGACAGGAAGGTATTGGAGCTTTGTGGACTGGCNCTCGGTCCAAACAT 277
                       ************* *******************************  *************

consensus_11927#0      AGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAG-- 1071
consensus_11927#1      AGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGAT 638
consensus_11927#2      AGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGAT 337
                       **********************************************************  

consensus_11927#0      --------------------------------------------------CTGGACTTGG 1081
consensus_11927#1      GTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTAGCTGGACTTGG 698
consensus_11927#2      GTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTAGCTGGACTTGG 397
                                                                         **********

consensus_11927#0      TGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGAT 1141
consensus_11927#1      TGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGAT 758
consensus_11927#2      TGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGGATGTGGTGAAATCAAGAATGAT 457
                       ************************************************************

consensus_11927#0      GGGTGACGCAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATGG 1201
consensus_11927#1      GGGTGACGCAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATGG 818
consensus_11927#2      GGGTGACGCAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATGG 517
                       ************************************************************

consensus_11927#0      ACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGT 1261
consensus_11927#1      ACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGT 878
consensus_11927#2      ACTTCCTGCTTTTTATAA-GGGTTCATTGCAAACTT------------------------ 552
                       ****************** *****************                        

consensus_11927#0      GATAATGTTTTTAACACTGGAGCAGGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGC 1321
consensus_11927#1      GATAATGTTTTTAACACTGGAGCAGGTAAGAAGATCAATTCTGTAAGTCTGCTGCAATAC 938
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      ACTGCAAGCCAAGGATCTATCATGCAAGTGAACAGCAGGAGCAGGACTGAATCGATGCTT 1381
consensus_11927#1      ACTGCAAGCCAAGGATCTATCATGCAAGTGAACAGCAGGAGCAGGACTGAATCGATGCTT 998
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      GATTTAGCTGTAGCTCCTGAGTCCACTTTATAGTGCTGTTTGCTGAAGGCCACATATGTC 1441
consensus_11927#1      GATTTAGCTGTAGCTCCTGAGTCCACTTTATAGTGCTGTTTGCTGAAGGCCACATATGTC 1058
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      TAGGATTAGATTTGTTTTGTACAGGACAATGCGTTCTAATTAAACCCATCAATTCAGCAG 1501
consensus_11927#1      TAGGATTAGATTTGTTTTGTACAGGACAATGCGTTCTAATTAAACCCATCAATTCAGCAG 1118
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      AGGACAACATCAACAGAGTCATTTGTGCAGAGATGATTGGCCATAACATGTCATTGTACT 1561
consensus_11927#1      AGGACAACATCAACAGAGTCATTTGTGCAGAGATGATTGGCCATAACATGTCATTGTACT 1178
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      GTCTGAGCAATTTTTTAATTTTACCAAAAATGAAACTCACAAAATCTAATGCAAATATAG 1621
consensus_11927#1      GTCTGAGCAATTTTTTAATTTTACCAAAAATGAAACTCACAAATTTTAAGGCAAATATAG 1238
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      GTTACTCTTGGTAGTAATTTCATGTATCCGAGGTTTGTAAACAATATGAAAGGAAGTTGT 1681
consensus_11927#1      GTTACTCTTGGTAGTAATTTCATGTATCCGAGGTTTGTAAACAATATGAAAGGAAGTTGT 1298
consensus_11927#2      ------------------------------------------------------------
                                                                                   

consensus_11927#0      GACTTAAACTTGATTTAGAATAAAAAAAAAAGAACAAAAATAAAAAAAAAAAAA 1735
consensus_11927#1      GACTTAAACTTGCTTTTGCA---------------------------------- 1318
consensus_11927#2      ------------------------------------------------------