These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11930#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1171 fasta sequence [GGCCTTGCACTTCCTTCATCTCTCTCTCTCTCCCCCTCTCTCTCTTCTTCCGCCGCCGCCGCCGCCGCTGCTCTCTCGCTTCGTTTGTCTCCACCGGCGCCGACGCCAGCTGCGTGCTGAAGTAAGCGGATGGACCTCACTCGCCGGCGCCGCCGGAGGCAACCTGCCCCGGGCGCTCCCCTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCCACCATGGAGGAAAAGCTGGCCACCCTGAATCTGCTCAACGGAGGAGGCGACGGGACAGCAGGTGAAGCTACCCAGGAGCAGCCACTCCCCGTGGTGATGCCGCCGAGCGCGGAC-TCGGTTCACGTCTTGCTCAAGCAGGCTCTGC-GGGCTGATGACCACGCATCCTTGCTCAATTGCTTGTACAATAAAGACCACAAGGTCATTGTTAATTCAATATCACTTCTTACACCAGCAGACGCTGTGAAGCTTCTCAA-GTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGA-CCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATCTGG--GGGGTGTTACTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCTCATGATGGGCAGAAGAAGTCGATAGGATAGTTTCTGAACACTTTTCACATTGATTTTTTCTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCACTTGTGAAACACATATACTCTTTACCATGAAAATACCCTTTTAGATACATAAATCTAGTTTTGACAGTGAAAGAAGGCAAGCATGAA] [+] EMBL CF329705 [GGCCTTGCACTTCCTTCATCTCTCTCTCTCTCCCCCTCTCTCTCTTCTTCCGCCGCCGCCGCCGCCGCTGCTCTCTCGCTTCGTTTGTCTCCACCGGCGCCGACGCCAGCTGCGTGCTGAAGTAAGCGGATGGACCTCACTCGCCGGCGCCGCCGGAGGCAACCTGCCCCGGGCGCTCCCCTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCCACCATGGAGGAAAAGCTGGCCACCCTG ] [+] EMBL AK110667 [ TCTCTCTCTCCCCCTCTCTCTCTTCTTCCGCCGCCGCCGCCGCCGCTGCTCTCTCGCTTCGTTTGTCTCCACCGGCGCCGACGCCAGCTGCGTGCTGAAGTAAGCGGATGGACCTCACTCGCCGGCGCCGCCGGAGGCAACCTGCCCCGGGCGCTCCCCTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCCACCATGGAGGAAAAGCTGGCCACCCTGAATCTGCTCAACGGAGGAGGCGACGGGACAGCAGGTGAAGCTACCCAGGAGCAGCCACTCCCCGTGGTGATGCCGCCGAGCGCGGAC TCGGTTCACGTCTTGCTCAAGCAGGCTCTGC GGGCTGATGACCACGCATCCTTGCTCAATTGCTTGTACAATAAAGACCACAAGGTCATTGTTAATTCAATATCACTTCTTACACCAGCAGACGCTGTGAAGCTTCTCAA GTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGA CCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATCTGG GGGGTGTTACTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCCCATGATGGGCAGAAGAAGTCGATAGGATAGTTTCTGAACACTTTTCACATTGATTTTTTCTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCACTTGTGAAACACATATACTCTTTACCATGAAAATACCCTTTTAGATACATACATCTAGTTTTGACAGTGAAAGAAGGCAAGCATGAA] [+] EMBL CF326793 [ GCCGCCGCTGCTCTCTCGCTTCGTTTGTCTCCACCGGCGCCGACGCCAGCTGCGTGCTGAAGTAAGCGGATGGACCTCACTCGCCGGCGCCGCCGGAGGCAACCTGCCCCGGGCGCTCCCCTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCCACCATGGAGGAAAAGCTGGCCACCCTGAATCTGCTCAACGGAGGAGGCGACGGGACAGCAGGTGAAGCTACCCAGGAGCAGCCACTCCCCGTGGTGATGCCGCCGAGCGCGGAC TCGGTTCACGTCTTGCTCAAGCAGGCTCTGC GGGCTGATGACCACGCATCCTTGCTCAATTGCTTGTACAATAAAGACCACAAGGTCATTGTTAATTCAATATCACTTCTTACACCAGCAGACGCTGTGAAGCTTCTCAA GTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGA CCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGA ] [+] EMBL C27127 [ CGCCGACG CAGCTGCGTGCTGAAGTAAGCGGATGGACCTCACTCGCCGGCGCCGC G NGCAACCTGCCCCGGGCGCTCCCCTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCCACCATGGAGGAAAAGCTGGCCACCCTGAATCTGCTCAACGGAGGAGGCGACGGGACAGCAGGTGAAGCTACCCAGGAGCAGCCACTCCCCGTGGTGATGCCGCCGAG GC GACTTCGGTTCACGTCTTGCTCAAGCAGGCTCTNCGGGGCTGATGACCACGCATCCTTGCTCAATTGCTTGTACAATAAAGACCACAAGGTAATTGTTAATTCAATATCACTTCTTACANCAGCAGACGCTGTGAAG TTCTCAATGTTCTTCATATTGCTTATG AATCGAGGGGTNCAGTGTTGG TTCCTn ] [-] EMBL CF326794 [ AAGCTTCTCAA GTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGACCCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATCTGG GGGGTGTTACTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATACATGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCTCATGATGGGCAGAAGAAGTCGATAGGATAGTTTCTGAACACTTTTCACATTGATTTTTTCTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCACTTGTGAAACACATATACTCTTTACCATGAAAATACCCTTTTAGATACATAAAaaa ] [+] EMBL CF326935 [ TCTCAA GTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGA CCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGA CTGGGNGGGGTGTTACTGATGCTTNTGAGCATTCANATGGAAGTGAGGTTATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCTCATGATGGGCAGAAGAAGTCGATAGGATAGTTTCTG ] [-] EMBL CF326936 [ GGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGACCCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATCTGG GGGGTGTTACTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTTATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCTCATGATGGGCAGAAGAAGTCGATAGGATAGTTTTTGAACACTTTTCACATTGATTTTTTCTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCACTTGTGAAACACATATACTCTTTACCATGAAAAaa ] [-] EMBL CF329706 [ CTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCTCATGATGGGCAGAAGAAGTCGATAGGATAGTTTCTGAACACTTTTCACATTGATTTTTTCTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCACTTGTGAAACACATATACTCTTTACCATGAAAATACCCTTTTAGATAAAAAA ] consensusID : consensus_11930#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [CATAAAGAGTTGTCTCCGTATGCACCACTTACAACCTCCTTTAGTGATGTGCATCAGGATGTCTGCATCTAGGCTATACAGCCCCTTGGAATTTGTGGATGTCAAAATTACTGTGAATATGTCAGCTTTTAGTGCACTAGTGGAGACATAATAACAATTATAAGTCATGTGCTCATGTTTATTTTTGGATTTTACTATTACTGATTGCATTTCTCTCAGCTAATTGATGCAAGAACATCGACCTTCAAATTATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCCCCGATAATTTATGAGGGCAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATTTGGGGGGTGTTACTGATGCTTTTGAGCATTCGGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATTTTCGTGATGAAAGTTGGAGTTGTGAGTTAACCCCTGATGGGCAGAAGAAGTCGATAGGATAGTTTTTGAACCCTTTTCCCATTGATTTTTTTTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760076 [CATAAAGAGTTGTCTCCGTATGCACCACTTACAACCTCCTTTAGTGATGTGCATCAGGATGTCTGCATCTAGGCTATACAGCCCCTTGGAATTTGTGGATGTCAAAATTACTGTGAATATGTCAGCTTTTAGTGCACTAGTGGAGACATAATAACAATTATAAGTCATGTGCTCATGTTTATTTTTGGATTTTACTATTACTGATTGCATTTCTCTCAGCTAATTGATGCAAGAACATCGACCTTCAAATTATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCCCCGATAATTTATGAGGGCAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATTTGGGGGGTGTTACTGATGCTTTTGAGCATTCGGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATTTTCGTGATGAAAGTTGGAGTTGTGAGTTAACCCCTGATGGGCAGAAGAAGTCGATAGGATAGTTTTTGAACCCTTTTCCCATTGATTTTTTTTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11930#0 GGCCTTGCACTTCCTTCATCTCTCTCTCTCTCCCCCTCTCTCTCTTCTTCCGCCGCCGCC 60 consensus_11930#1 ------------------------------------------------------------ consensus_11930#0 GCCGCCGCTGCTCTCTCGCTTCGTTTGTCTCCACCGGCGCCGACGCCAGCTGCGTGCTGA 120 consensus_11930#1 ------------------------------------------------------------ consensus_11930#0 AGTAAGCGGATGGACCTCACTCGCCGGCGCCGCCGGAGGCAACCTGCCCCGGGCGCTCCC 180 consensus_11930#1 ------------------------------------------------------------ consensus_11930#0 CTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCC 240 consensus_11930#1 ------------------------------------------------------------ consensus_11930#0 ACCATGGAGGAAAAGCTGGCCACCCTGAATCTGCTCAACGGAGGAGGCGACGGGACAGCA 300 consensus_11930#1 ------------------------------------------------------------ consensus_11930#0 GGTGAAGCTACCCAGGAGCAGCCACTCCCCGTGGTGATGCCGCCGAGCGCGGACTCGGTT 360 consensus_11930#1 ------------------------------------------------------------ consensus_11930#0 CACGTCTTGCTCAAGCAGGCTCTGCGGGCTGATGACCACGCATCCTTGCTCAATTGCTTG 420 consensus_11930#1 --------------------------------------------CATAAAGAGTTGTCTC 16 * * * *** * consensus_11930#0 TACAATAAAGACC-ACAAGGTCATTGTTAATTCAATATCACTTCTTACACCAGCAGACGC 479 consensus_11930#1 CGTATGCACCACTTACAACCTCCTTTAGTGATGTGCATCAGGATGTCTGCATCTAG--GC 74 * * ** **** ** ** * **** * * ** ** consensus_11930#0 TGTGAAGCTTCTCAAGTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTC 539 consensus_11930#1 TATACAGCCCCTTGGAATTT----GTGGATGTCAAAATTACTGTGAATATGTCAGCTTTT 130 * * *** ** * * * * * *** * * * * * *** consensus_11930#0 CTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGA 599 consensus_11930#1 AGTGCACTAGTGGAGACATAATAA---CAATTATAAGTCATGTGCTCATGTTTATTTTTG 187 *** * *** ** * * ** * * * ** **** * consensus_11930#0 GTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGACCTT 659 consensus_11930#1 GATTTTACTATTACTGATTGCATT--TCTCTCAGCTAATTGATGCAAGAACATCGACCTT 245 * ** ** * *** * * *** *** ************************** consensus_11930#0 CAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGA 719 consensus_11930#1 CAAATTATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGA 305 ***** ****************************************************** consensus_11930#0 TGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGA 779 consensus_11930#1 TGGATCCGGAGAGGAAGAAGGATCCCCCCCGATAATTTATGAGGGCAAGGATACTGATGA 365 *************************** **************** *************** consensus_11930#0 TGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATCTGGGGGGTGT 839 consensus_11930#1 TGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATTTGGGGGGTGT 425 ************************************************* ********** consensus_11930#0 TACTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATAC 899 consensus_11930#1 TACTGATGCTTTTGAGCATTCGGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATAC 485 *********** ********* ************************************** consensus_11930#0 CTGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCTCATGATGGGC 959 consensus_11930#1 CTGATGAGCTCTTGATTTTCGTGATGAAAGTTGGAGTTGTGAGTTAACCCC-TGATGGGC 544 **************** ********** ********************* * ******** consensus_11930#0 AGAAGAAGTCGATAGGATAGTTTCTGAACACTTTTCACATTGATTTTTTCTGATGAGTTG 1019 consensus_11930#1 AGAAGAAGTCGATAGGATAGTTTTTGAACCCTTTTCCCATTGATTTTTTTTGATGAGTTG 604 *********************** ***** ****** ************ ********** consensus_11930#0 CGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGC 1079 consensus_11930#1 CGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGC 664 ************************************************************ consensus_11930#0 CTGCACTTGTGAAACACATATACTCTTTACCATGAAAATACCCTTTTAGATACATAAATC 1139 consensus_11930#1 CTGCAAAAAAAAAAAAAAAAAAAAAAAA-------------------------------- 692 ***** *** * * * * consensus_11930#0 TAGTTTTGACAGTGAAAGAAGGCAAGCATGAA 1171 consensus_11930#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||