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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1891 fasta sequence
[ACTACTCTTCTTCTTCCGCAGCGGCAGCCGCCTCCGCCTCCGGCCCCGCGCTCGCTGGCTAGGGTTAGGGTTTAGCCTCTCCCCCTCCCCCTATTCCTTTCGATGGATGCGGCGCACAAGCGCAAGCGGCCGGACGCCGACGACGACGGCGCTGCGGGGGCGGTGGACCTCTCCTCCCTGGAGGGCGCCGACGACGTGGAGGTGCTCGACCTCCGCGCCGCCAAGCGCCTCCTGCTCGCCTTCGAGCGCCGCCTGCGCGACAACCTCGAGGCCCGCATGAAGCACCCCGACGACCCCGCCCGCTTCGCCGACTCCGAGATCGCCCTCCACGCCGAGACCGACCGCCTCCGCCTCCTCGCCGGCGCCCCGGACCTCTTCCCGGACCTCGTCCCCCTCGGCCTCGCCTCCTCCCTCTCCTCCCTCCTCACCCACGACAACGCCGACCTCGCCGCCGCCGCTGCCTCCCTCCTCGCCGACCTCACCGACTCCGACGACCCCGACGACCT-CGCCGGCCTCCACTCCCTCGCCGACGCCCTCGTCGAAGCCAACGCCCTCGACCTCCTCGTCCACAATCTCTCCCGCTTCTCCGAGGCCGACCCCGACGAAGCCGAGGCTGTCCACCACACCCTCTCTGTCGTTGAAAACCTCCTCGAGCTCCGCCCCCAACTCGCCGACATTGTCTGCGACCGCACCAAGCTTCTCCGCTGGCTCCTCGCCCGCCTCAAGGCCCGCGAGTTCGATGCCAACAAGCAGTACGCCTCCGAGATCCTCGCCATCCTCCTACAGGACAGCCCCGCCAACCAGAAGCGCCTGGGCAACATCAATGGAGTCGACGGCCTGCTGCAGGCCGTTGCCATGTACAAGTCCAGGGACCCAAAGACCTCTGATGAGGAGGAGATGCTCGAGAACCTCTTCGATTGCCTCTGCTGTGTGCTCATGCCCATGGAGAACAAGGAAAGATTTGTCAAGGCGGAGGGCGTCGAGCTCATGATCATCATCATGAAGCAGAAGAAGCTGGCATACAGCTCTGCCATCCGGACCCTCGATTTTGCCATGACTAGGTTCCCACCTGCTTGCGAGCGCTTTGTTGATGTACTTGGGCTGAAGACCGCTTTTGCTGCGTTCATGGGTAAGATTCCTGTGAACAAGAAAAACAAAAAAGAGAGTTATCAGGAAGCACTAGAAGAACGGGTCATTTCACTAATTGCTTCATTGTTTGGTGGTATTACAAAAGGTTCACGAAGAATCAGGTTACTAGGAAAATTTGTTGAGAATGAATGTGAAAAGATAGACCGTTTGATGGAGTTTTACACAAGGTATTCAGAAAGAGTGAAAGCTGAGACTGAAAGACTTGACAGTCTTGATTTAGATGATCTAGAGATGGATGAAGATGAGCGCTACAATCGCAAGCTAGAAGCTGGTCTTTACACACTTCAGTTAATTGCACTTATTCTGGGGCATATATGGCACTCTGGCAATTCACAGATGAGAACAAGAATAGAGTTGCTTCTAAGACAGAACAAACTGACTAAGGATGACGTTAAGGATATACTTGAGGAGTATCATGACAACATTGGAGATCTGGATGGGCCTGAAGAGAAGGAAAGAGCGCAAGGGCGGACAAAAGAGATCATAGCATCTTTATCTTTGTGATGCGTACTCTATTTTGCGTCATCACCAGTCCACCACCCTGTAACCAAAACCAATGGTGTTGTAGCTCCTCTCATCTTGACAAGACGGACTATCATATGATGACTTGTGCGTAGCGTTGGTTGCGTTGCAGGGTATTCTTTTTGTAAACTAGTAATATAACTAGCTGGGTGG-CCCGCGCAATTGCGCGGC-TAGCATTCATACATAATTATCGGTTTTTTTACATATAATATTACTTGAA]
[+] EMBL AK101449 [ACTACTCTTCTTCTTCCGCAGCGGCAGCCGCCTCCGCCTCCGGCCCCGCGCTCGCTGGCTAGGGTTAGGGTTTAGCCTCTCCCCCTCCCCCTATTCCTTTCGATGGATGCGGCGCACAAGCGCAAGCGGCCGGACGCCGACGACGACGGCGCTGCGGGGGCGGTGGACCTCTCCTCCCTGGAGGGCGCCGACGACGTGGAGGTGCTCGACCTCAGCGCCGCCAAGCGCCTCCTGCTCGCCTTCGAGCGCCGCCTGCGCGACAACCTCGAGGCCCGCATGAAGCACCCCGACGACCCCGCCCGCTTCGCCGACTCCGAGATCGCCCTCCACGCCGAGACCGACCGCCTCCGCCTCCTCGCCGGCGCCCCGGACCTCTTCCCGGACCTCGTCCCCCTCGGCCTCGCCTCCTCCCTCTCCTCCCTCCTCACCCACGACAACGCCGACCTCGCCGCCGCCGCTGCCTCCCTCCTCGCCGACCTCACCGACTCCGACGACCCCGACGACCT CGCCGGCCTCCACTCCCTCGCCGACGCCCTCGTCGAAGCCAACGCCCTCGACCTCCTCGTCCGCAATCTCTCCCGCTTCTCCGAGGCCGACCCCGACGAAGCCGAGGCTGTCCAC CACCCTCTCTGTCGTTGAAAACCTCCTCGAGCTCCGCCCCCAACTCGCCGACATTGTCTGCGACCGCACCAAGCTTCTCCGCTGGCTCCTCGCCCGCCTCAAGGCCCGCGAGTTCGATGCCAACAAGCAGTACGCCTCCGAGATCCTCGCCATCCTCCTACAGGACAGCCCCGCCAACCAGAAGCGCCTGGGCAACATCAATGGAGTCGACGGCCTGCTGCAGGCCGTTGCCATGTACAAGTCCAGGGACCCAAAGACCTCTGATGAGGAGGAGATGCTCGAGAACCTCTTCGATTGCCTCTGCTGTGTGCTCATGCCCATGGAGAACAAGGAAAGATTTGTCAAGGCGGAGGGCGTCGAGCTCATGATCATCATCATGAAGCAGAAGAAGCTGGCATACAGCTCTGCCATCCGGACCCTCGATTTTGCCATGACTAGGTTCCCACCTGCTTGCGAGCGCTTTGTTGATGTACTTGGGCTGAAGACCGCTTTTGCTGCGTTCATGGGTAAGATTCCTGTGAACAAGAAAAACAAAAAAGAGAGTTATCAGGAAGCACTAGAAGAACGGGTCATTTCACTAATTGCTTCATTGTTTGGTGGTATTACAAAAGGTTCACGAAGAATCAGGTTACTAGGAAAATTTGTTGAGAATGAATGTGAAAAGATAGACCGTTTGATGGAGTTTTACACAAGGTATTCAGAAAGAGTGAAAGCTGAGACTGAAAGACTTGACAGTCTTGATTTAGATGATCTAGAGATGGATGAAGATGAGCGCTACAATCGCAAGCTAGAAGCTGGTCTTTACACACTTCAGTTAATTGCACTTATTCTGGGGCATATATGGCACTCTGGCAATTCACAGATGAGAACAAGAATAGAGTTGCTTCTAAGACAGAACAAACTGACTAAGGATGACGTTAAGGATATACTTGAGGAGTATCATGACAACATTGGAGATCTGGATGGGCCTGAAGAGAAGGAAAGAGCGCAAGGGCGGACAAAAGAGATCATAGCATCTTTATCTTTGTGATGCGTACTCTATTTTGCGTCATCACCAGTCCACCACCCTGTAACCAAAACCAATGGTGTTGTAGCTCCTCTCATCTTGACAAGACGGACTATCATATGATGACTTGTGCGTAGCGTTGGTTGCGTTGCAGGGTATTCTTTTTGTAAACTAGTAATATAACTAGCTGGGTGG CCCGCGCAATTGCGCGGC TAGCATTCATACATAATTATCGGTTTTTTTACATATAATATTACTT ]
[+] EMBL CB656817 [ CCCCTATTCCTTTCGATGGATGCGGCGCACAAGCGCAAGCGGCCGGACGCCGACGACGACGGCGCTGCGGGGGCGGTGGACCTCTCCTCCCTGGAGGGCGCCGACGACGTGGAGGTGCTCGACCTCCGCGCCGCCAAGCGCCTCCTGCTCGCCTTCGAGCGCCGCCTGCGCGACAACCTCGAGGCCCGCATGAAGCACCCCGACGACCCCGCCCGCTTCGCCGACTCCGAGATCGCCCTCCACGCCGAGACCGACCGCCTCCGCCTCCTCGCCGGCGCCCCGGACCTCTTCCCGGACCTCGTCCCCCTCGGCCTCGCCTCCTCCCTCTCCTCCCTCCTCACCCACGACAACGCCGACCTCGCCGCCGCCGCTGCCTCCCTCCTCGCCGACCTCACCGACTCCGACGACCCCGACGACCT CGCCGGCCTCCACTCCCTCGCCGACGCCCTCGTCGAAGCCAACGCCCTCGACCTCCTCGTCCACAATCTCTCCCGCTTCTCCGAGGCCGACCCCGACGAAGCCGAGGCTGTCCACCACACCCTCTCTGTCGTTGAAAACCTCCTCGAGCTCCGCCCCCAACTCACCGACATTGTCTGCGACCGCACCAAGCTTCTCCGCTGGCTCCTCGCCCGCCTCAAGGCCCGCGAGTTCG ]
[+] EMBL CB656791 [ CCCCCCTTCCTTTCGATGGATGCGGCGCACAAGCGCAAGCGGCCGGACGCCGACGACGACGGCGCTGCGGGGGCGGTGGACCTCTCCTCCCTGGAGGGCGCCGACGACGTGGAGGTGCTCGACCTCCGCGCCGCCAAGCGCCTCCTGCTCGCCTTCGAGCGCCGCCTGCGCGACAACCTCGAGGCCCGCATGAAGCACCCCGACGACCCCGCCCGCTTCGCCGACTCCGAGATCGCCCTCCACGCCGAGACCGACCGCCTCCGCCTCCTCGCCGGCGCCCCGGACCTCTTCCCGGACCTCGTCCCCCTCGGCCTCGCCTCCTCCCTCTCCTCCCTCCTCACCCACGACAACGCCGACCTCGCCGCCGCCGCTGCCTCCCTCCTCGCCGACCTCCCCGACTCCGACGACCCCGACGACCTCCGCCGGCCTCCACTCCCTCGCCGACCCCCTCGTCGAAGCCAACGCCCTCGACCTCCTCGTCCCCAGTCTCTCCCGCTTCTCCGca ]
[+] EMBL CB656790 [ CCCCTATTCCTTTCGATGGATGCGGCGCACAAGCGCAAGCGGCCGGACGCCGACGACGACGGCGCTGCGGGGGCGGTGGACCTCTCCTCCCTGGAGGGCGCCGACGACGTGGAGGTGCTCGACCTCCGCGCCGCCAAGCGCCTCCTGCTCGCCTTCGAGCGCCGCCTGCGCGACAACCTCGAGGCCCGCATGAAGCACCCCGACGACCCCGCCCGCTTCGCCGACTCCGAGATCGCCCTCCACGCCGAGACCGACCGCCTCCGCCTCCTCGCCGGCGCCCCGGACCTCTTCCCGGACCTCGTCCCCCTCGGCCTCGCCTCCTCCCTCTCCTCCCTCCTCACCCACGACAACGCCGACCTCGCCGCCGCCGCTGCCTCCCTCCTCGCCGACCTCACCGACTCCGACGACCCCGACGACCT CGCCGGCCTCCACTCCCTCGCCGACGCCCTCGTCGAAGCCAACGCCCTCGACCTCCTCGTCCACAATCTCTCCCGCTTCTCCGAGGCCGACCCCGACGAAGCCGAGGCTGTCCACCACACCCTCTCTGTCGTTGAAAACCTCCTCGAGCTCCGCCCCCAACTCGCCGACATTGTCTGCGACCGCACCAAGCTTCTCCGCTGGCTCCTCGCCCGCCTCAAGGCCCGCGAGTTCGATGCCAACAAGCAGTACGCCTCCGAGATCCTCGCCATCCTCCTACAGGACAGCCCCGCCAACCAAAAGCGCCTGGGCAACATCCATGGAGTCCACCGC ]
[+] EMBL AK106522 [ GCACAAGCGCAAGCGGCCGGACGCCGACGACGACGGCGCTGCGGGGGCGGTGGACCTCTCCTCCCTGGAGGGCGCCGACGACGTGGAGGTGCTCGACCTCCGCGCCGCCAAGCGCCTCCTGCTCGCCTTCGAGCGCCGCCTGCGCGACAACCTCGAGGCCCGCATGAAGCACCCCGACGACCCCGCCCGCTTCGCCGACTCCGAGATCGCCCTCCACGCCGAGACCGACCGCCTCCGCCTCCTCGCCGGCGCCCCGGACCTCCTCCCGGACCTCGTCCCCCTCGGCCTCGCCTCCTCCCTCTCCTCCCTCCTCACCCACGACAACGCCGACCTCGCCGCCGCCGCTGCCTCCCTCCTCGCCGACCTCACCGACTCCGACGACCCCGACGACCT CGCCGGCCTCCACTCCCTCGCCGACGCCCTCGTCGAAGCCAACGCCCTCGACCTCCTCGTCCACAATCTCTCCCGCTTCTCCGAGGCCGACCCCGACGAAGCCGAGGCTGTCCACCACACCCTCTCTGTCGTTGAAAACCTCCTCGAGCTCCGCCCCCAACTCGCCGACATTGTCTGCGACCGCACCAAGCTTCTCCGCTGGCTCCTCGCCCGCCTCAAGGCCCGCGAGTTCGATGCCAACAAGCAGTACGCCTCCGAGATCCTCGCCATCCTCCTACAGGACAGCCCCGCCAACCAGAAGCGCCTGGGCAACATCAATGGAGTCGACGGCCTGCTGCAGGCCGTTGCCATGTACAAGTCCAGGGACCCAAAGACCTCTGATGAGGAGGAGATGCTCGAGAACCTCTTCGATTGCCTCTGCTGTGTGCTCATGCCCATGGAGAACAAGGAAAGATTTGTCAAGGCGGAGGGCGTCGAGCTCATGATCATCATCATGAAGCAGAAGAAGCTGGCATACAGCTCTGCCATCCGGACCCTCGATTTTGCCATGACTAGGTTCCCACCTGCTTGCGAGCGCTTTGTTGATGTACTTGGGCTGAAGACCGCTTTTGCTGCGTTCATGGGTAAGATTCCTGTGAACAAGAAAAACAAAAAAGAGAGTTATCAGGAAGCACTAGAAGAACGGGTCATTTCACTAATTGCTTCATTGTTTGGTGGTATTACAAAAGGTTCACGAAGAATCAGGTTACTAGGAAAATTTGTTGAGAATGAATGTGAAAAGATAGACCGTTTGATGGAGTTTTACACAAGGTATTCAGAAAGAGTGAAAGCTGAGACTGAAAGACTTGACAGTCTTGATTTAGATGATCTAGAGATGGATGAAGATGAGCGCTACAATCGCAAGCTAGAAGCTGGTCTTTACACACTTCAGTTAATTGCACTTATTCTGGGGCATATATGGCACTCTGGCAATTCACAGATGAGAACAAGAATAGAGTTGCTTCTAAGACAGAACAAACTGACGAAGGATGACGTTAAGGATATACTTGAGGAGTATCATGACAACATTGGAGATCTGGATGGGCCTGAAGAGAAGGAAAGAGCGCAAGGGCGGACAAAAGAGATCATAGCATCTTTATCTTTGTGATGCGTACTCTATTTTGCGTCATCACCAGTCCACCACCCTGTAACCAAAACCAATGGTGTTGTAGCTCCTCTCATCTTGACAAGACGGACTATCATATGATGACTTGTGCGTAGCGTTGGTTGCGTTGCAGGGTATTCTTTTTGTAAACTAGTAATATAACTAGCTGGGTGG CCCGCGCAATTGCGCGGC TAGCATTCATACATAATTATCGGTTTTTTTACATATAATATTACTT ]
[+] EMBL CB659551 [ GACGACCT CGCCGGCCTCCACTCCCTCGCCGACGCCCTCGTCGAAGCCAACGCCCTCGACCTCCTCGTCCACAATCTCTCCCGCTTCTCCGAGGCCGACCCCGACGAAGCCGAGGCTGTCCACCACACCCTCTCTGTCGTTGAAAACCTCCTCGAGCTCCGCCCCCAACTCGCCGACATTGTCTGCGACCGCACCAAGCTTCTCCGCTGGCTCCTCGCCCGCCTCAAGGCCCGCGAGTTCGATGCCAACAAGCAGTACGCCTCCGAGATCCTCGCCATCCTCCTACAGGACAGCCCCGCCAACCAGAAGCGCCTGGGCAACATCAATGGAGTCGACGGCCTGCTGCAGGCCGTTGCCATGTACAAGTCCAGGGACCCAAAGACCTCTGATGAGGAGGAGATGCTCGAGAACCTCTTCGATTGCCTCTGCTGTGTGCTCATGCCCATGGAGAACAAGGAAAGATTTGTCAAGGCGGAGGGCGTCGAGCTCATGATCATCATCATGAAGCAGAAGAAGCTGGCATACAGCTCTGCCATCCGGACCCTCGATTTTGCCATGACTAGGTTCCCACCTGCTTGCGAGCGCTTTGTTGATGTACTTGGGCTGAAGACCGCTTTTGCTGCGTTCATGGGTAAGATTCCTGTGAACAAGAAAAACAAAAAAGAGAGTTATCAGGAAGCACTAGAAGAACGGGTCATTTCACTAATTGCTTCATTGTTTGGTGGTATTACAAAAGGTTCACGAAGAATCAGGTTACTAGGAAAATTTGTTGAGAATCGATGTG ]
[-] EMBL CB659552 [ TTGTTGATGTACTTGGGCTGAAGACCGCTTTTGCTGCGTTCATGGGTAAGATTCCTGTGAACAAGAAAAACAAAAAAGAGAGTTATCAGGAAGCACTAGAAGAACGGGTCATTTCACTAATTGCTTCATTGTTTGGTGGTATTACAAAAGGTTCACGAAGAATCAGGTTACTAGGAAAATTTGTTGAGAATGAATGTGAAAAGATAGACCGTTTGATGGAGTTTTACACAAGGTATTCAGAAAGAGTGAAAGCTGAGACTGAAAGACTTGACAGTCTTGATTTAGATGATCTAGAGATGGATGAAGATGAGCGCTACAATCGCAAGCTAGAAGCTGGTCTTTACACACTTCAGTTAATTGCACTTATTCTGGGGCATATATGGCACTCTGGCAATTCACAGATGAGAACAAGAATAGAGTTGCTTCTAAGACAGAACAAACTGACTAAGGATGACGTTAAGGATATACTTGAGGAGTATCATGACAACATTGGAGATCTGGATGGGCCTGAAGAGAAGGAAAGAGCGCAAGGGCGGACAAAAGAGATCATAGCATCTTTATCTTTGTGATGCGTACTCTATTTTGCGTCATCACCAGTCCACCACCCTGTAACCAAAACCAATGGTGTTGTAGCTCCTCTCATCTTGACAAGACGGACTATCATATGATGACTTGTGCGTAGCGTTGGTTGCGTTGCAGGGTATTCTTTTTGTAAACTAGTAATATAACTAGCTGGGTGG CCCGCGCAATTGCGCGGC TAGCATTCATACATAATTATCGGTTTTTTTACATATAAacaaaaaagaa]
[+] EMBL AU075602 [ TCATTTCACTAATTGCTTCATTGTTTGGTGGTATTACAAAAGGTTCACGAAGAATCAGGTTACTAGGAAAATTTGTTGAGAATGAATGTGAAAAGATAGACCGTTTGATGGAGTTTTACACAAGGTATTCAGAAAGAGTGAAAGCTGAGACTGAAAGACTTGACAGTCTTGATTTAGATGATCTAGAGATGGATGAAGATGAGCGCTACAATCGCAAGCTAGAAGCTGGTCTTTACACACTTCAGTTAATTGCACTTATTCTGGGGCATATATGGCACTCTGGCAATTCACAGATGAGAACAAGAATAGAGTTGCTTCTAAGACAGAACAAACTGACTAAGGATGACGTTAAGGATATACTTGAGGAGTATCATGACAACATTGGAGATCTGGATGGGCCTGAAGAGAAGGAAAGAGCGCAAGGGCGGACAAAAGAGATCATAGCATCTTTATCTTTGTGATGCGTACTCTATTTTGCGTCATCACCAGTCCACCACCCTGTAACCAAAACCAATGGTGTTGTAGCTCCTCTCATCTTGACAAGACGGACTATCATATGATGACTTGTGCGTAGCGTTGGTTGCGTTGCAGGGTATTCTTTTTGTAAACTAGTAATATAACTAGCTGGGTGGNCNCGCGCAATTGCGCGGC TAGCATTCATACATAATTATCGGTTTTTTTACAAAAAAa ]
[+] EMBL AU075665 [ TGACAACATTGGAGATCTGGATGGGCCTGAAGAGAAGGAAAGAGCGCAAGGGCGGACAAAAGAGATCATAGCATCTTTATCTTTGTGATGCGTACTCTATTTTGCGTCATCACCAGTCCACCACCCTGTAACCAAAACCAATGGTGTTGTAGCTCCTCTCATCTTGACAAGACGGACTATCATATGATGACTTGTGCGTAGGTTTGGTTGCGTTGCAGGGTATTCTTTTTGTAAACTAGTAATATAACTAGCTGGGTGG CCCGCGCAATTGCG GCCTTAGCATTCATACATAATTATCGGTTTTTTTACAaaaa ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||