Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11938 cluster # 11938       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11938#0 length = 2505 sequences # 7  
consensus_11938#1 length = 582 sequences # 1  
consensus_11938#2 length = 260 sequences # 1  

consensusID : consensus_11938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2505
fasta sequence
                              [TCTGCTAGCTAGTACAGTACATATCCATCTATCCGTCTGTTAGAGTAAAAATTCCCCATTTAATTAGGATCGATCGATTGGATTGAAGCTGGCGATGGCGAGCGGCGTGTGCCCTCCTGCGGAGCTGGGGTTCGGGGCGGAGTACTACTCGGTGGTGAACGGGGTGTGCAGCCGCGCCGGCAGCTACTTCGGCGGAAGGCCGGTGCTCACGCAGGCCGTCGGGTACGCCGTCGTGCTCGGCTTCGGCGCCTTCTTCGCGCTCTTCACCTCCTTCCTGGTGTGGCTTGAGAAGCGTTACGTCGGGTCGCAGCACACGTCGGAGTGGTTCAACACGGCGGGGCGCAGCGTGAAGACGGGTCTGATCGCCAGCGTGATCGTGTCGCAGTGGACCTGGGCCGCCACCATCCTGCAGAGCTCGAACGTGGCATGGCAGTACGGGGTGAGCGGGCCATTCTGGTACGCCAGCGGCGCCACCATCCAGGTGCTCCTCTTCGGCGTGATGGCCATCGAGATCAAGCGCAAGGCCCCCAACGCCCACACCGTCTGCGAGATCGTCCGCGCCCGATGGGGCACCCCCGCCCACCTCGTCTTCCTCACCTTCTGCCTCCTCACCAACGTCATCGTCACCGCCATGCTCCTCCTTGGCGGCTCCGCCG-TCG-TCAAC-GCCCTCACCGGAGTCAACGTC-TACGCCGCCAGCTTCCTCATCCCGCTCGGCGTCGTCGTCTACACACTCGCCGGCGGCCTCAAGGCCACCTTCCTCGCCAGCTACATCCACTCCGTCGTCGTGCACGCGGTGCTCGTCGTCTTCGTCTTCCTCGTCTACACCTCCAGCTCCAAACTCGGGAGCCCGCGTGTGGTGTATGATCGCCTCATGGCCGTCGCCAGCGCCGCGCGCGACTGCTCCGCCGACCTCTCGCGCAACGGCCAGGCGTGCGGCCCCGTCGCCGGCAACTTCAAGGGCTCCTACCTCACCATGCTCAGCTCGGGGGGCTCGTCTTCGGCATCATCAACATCGTCGGCAACTTTGGAACGGTGTTCGTAGACAACGGCTACTGGATGAGCGCCATCGCCGCCCGGCCATCCTCCACCCACAAGGGCTACCTGCTGGGCGGCCTCGTGTGGTTCGCCGTTCCCTTCTCGCTGGCCACCTCGCTCGGCCTCGGCGCGCTCGCCCTGGACCTCCCGCTCACCGCCGCCGAGGCAGCCAAGGGCCTGGTGCCCCCGGCCACCGCAACAGCGCTCATGGGCAAGTCCGGCTCCGTCCTGCTACTCACCATGCTCTTCATGGCCGTCACATCCGCCGGCTCCGCCGAGCTGGTGGCCGTCTCCTCCCTCTGCACCTACGACATCTACCGGACGTACCTCAACCCGGGCGCCTCCGGCAAGCAGATACTCCGCGTGTCGAGGGCCGTCGTGCTCGGCTTCGGCTGCTTCATGGGGGTCCTCGCCGTGGTGCTCAACGTGGCGGGGGTGTCCCTGGGGTGGATGTACCTGGCCATGGGAGTCATTGTGGGATCCGCAGTCATCCCCATCGCCCTGCTGCTGCTGTGGAGCAAGGCCAACGCGGTGGGCGCCATGGGCGGCGCGGTGTCCGGCTGCGCGCTGGGCGTGGCCGTGTGGCTCACGGTGGCCAAGGTGCAGTACGGGCGCGTGAACCTGGACACCACAGGTCGGAACGCGCCGATGCTGGCGGGCAACCTGGTGTCCATCCTGGTGGGCGGGGCGGTGCACGCGGCGTGCAGCCTGCTGCGCCCGCAGCACTACGACTGGGGGACCAGCCGGGAGATGATCACCACGGTGGAGAGCGTGCATGCCGCGCTGGACGACGAGCTCAAGGAGGAGCGCCTGGTGCACGCCAAGCGTTGGATCGTCAGGTGGGGCCTCGTCTTCACCGCCGTCATCGTCGTGGCGTGGCCTGCGCTGTCTCTGCCGGCGAGGAGGTACA-GCCTTGGCTAC-TTCACGCTGT-GGCCGCGGTGGCGATCGCGTGGGGGACTGTGGGCT-CGGTCGTCATCAT-CCTTC-TGCCGGTGGCCGAGAGCTGGACCACCATCACCAAGGTCTGCGCCGGCATGTTCACCAACGACGCTGTGTACGACCGCCTCGACGACGTCAACCTCCGCCTCCGCGCCATCATGGGCGCCATGCCCGAGGCTGAGAAGCGCTACCGCCAGCTAC-ACGAGACGGAGATGCACCCTGCCGGAACCCATCCGGCCAACGACGACGACGACG-AC-AATAATAATAATCAGATGATGCACTCCTGATTCCATCC-A-ATCATCCATCCATCCATCCA-TAGACTAATTAAGATTTCTACGTACTATATACTACTCGTACGTACACTTTTTATATACACACATATATGTATGGAGAGCCTATATAATTAAAAAAGAGTGTGCATCAGCAGCGTGTGCATGATAGTGAACACGTTTTGTGTATACTACAAAATAACCGATGTTTCTCGTTAGCTGATATGTTGGTTGATAATAAACAGGCAGCCTACGTCAAAAAAAA]

[+] EMBL AK070459             [TCTGCTAGCTAGTACAGTACATATCCATCTATCCGTCTGTTAGAGTAAAAATTCCCCATTTAATTAGGATCGATCGATTGGATTGAAGCTGGCGATGGCGAGCGGCGTGTGCCCTCCTGCGGAGCTGGGGTTCGGGGCGGAGTACTACTCGGTGGTGAACGGGGTGTGCAGCCGCGCCGGCAGCTACTTCGGCGGAAGGCCGGTGCTCACGCAGGCCGTCGGGTACGCCGTCGTGCTCGGCTTCGGCGCCTTCTTCGCGCTCTTCACCTCCTTCCTGGTGTGGCTTGAGAAGCGTTACGTCGGGTCGCAGCACACGTCGGAGTGGTTCAACACGGCGGGGCGCAGCGTGAAGACGGGTCTGATCGCCAGCGTGATCGTGTCGCAGTGGACCTGGGCCGCCACCATCCTGCAGAGCTCGAACGTGGCATGGCAGTACGGGGTGAGCGGGCCATTCTGGTACGCCAGCGGCGCCACCATCCAGGTGCTCCTCTTCGGCGTGATGGCCATCGAGATCAAGCGCAAGGCCCCCAACGCCCACACCGTCTGCGAGATCGTCCGCGCCCGATGGGGCACCCCCGCCCACCTCGTCTTCCTCACCTTCTGCCTCCTCACCAACGTCATCGTCACCGCCATGCTCCTCCTTGGCGGCTCCGCCG TCG TCAAC GCCCTCACCGGAGTCAACGTC TACGCCGCCAGCTTCCTCATCCCGCTCGGCGTCGTCGTCTACACACTCGCCGGCGGCCTCAAGGCCACCTTCCTCGCCAGCTACATCCACTCCGTCGTCGTGCACGCGGTGCTCGTCGTCTTCGTCTTCCTCGTCTACACCTCCAGCTCCAAACTCGGGAGCCCGCGTGTGGTGTATGATCGCCTCATGGCCGTCGCCAGCGCCGCGCGCGACTGCTCCGCCGACCTCTCGCGCAACGGCCAGGCGTGCGGCCCCGTCGCCGGCAACTTCAAGGGCTCCTACCTCACCATGCTCAGCTCGGGGGGCTCGTCTTCGGCATCATCAACATCGTCGGCAACTTTGGAACGGTGTTCGTAGACAACGGCTACTGGATGAGCGCCATCGCCGCCCGGCCATCCTCCACCCACAAGGGCTACCTGCTGGGCGGCCTCGTGTGGTTCGCCGTTCCCTTCTCGCTGGCCACCTCGCTCGGCCTCGGCGCGCTCGCCCTGGACCTCCCGCTCACCGCCGCCGAGGCAGCCAAGGGCCTGGTGCCCCCGGCCACCGCAACAGCGCTCATGGGCAAGTCCGGCTCCGTCCTGCTACTCACCATGCTCTTCATGGCCGTCACATCCGCCGGCTCCGCCGAGCTGGTGGCCGTCTCCTCCCTCTGCACCTACGACATCTACCGGACGTACCTCAACCCGGGCGCCTCCGGCAAGCAGATACTCCGCGTGTCGAGGGCCGTCGTGCTCGGCTTCGGCTGCTTCATGGGGGTCCTCGCCGTGGTGCTCAACGTGGCGGGGGTGTCCCTGGGGTGGATGTACCTGGCCATGGGAGTCATTGTGGGATCCGCAGTCATCCCCATCGCCCTGCTGCTGCTGTGGAGCAAGGCCAACGCGGTGGGCGCCATGGGCGGCGCGGTGTCCGGCTGCGCGCTGGGCGTGGCCGTGTGGCTCACGGTGGCCAAGGTGCAGTACGGGCGCGTGAACCTGGACACCACAGGTCGGAACGCGCCGATGCTGGCGGGCAACCTGGTGTCCATCCTGGTGGGCGGGGCGGTGCACGCGGCGTGCAGCCTGCTGCGCCCGCAGCACTACGACTGGGGGACCAGCCGGGAGATGATCACCACGGTGGAGAGCGTGCATGCCGCGCTGGACGACGAGCTCAAGGAGGAGCGCCTGGTGCACGCCAAGCGTTGGATCGTCAGGTGGGGCCTCGTCTTCACCGCCGTCATCGTCGTGGCGTGGCCTGCGCTGTCTCTGCCGGCGAGGAGGTACA GCCTTGGCTAC TTCACGCTGTGGGCCGCGGTGGCGATCGCGTGGGGGACTGTGGGCT CGGTCGTCATCAT CCTTC TGCCGGTGGCCGAGAGCTGGACCACCATCACCAAGGTCTGCGCCGGCATGTTCACCAACGACGCTGTGTACGACCGCCTCGACGACGTCAACCTCCGCCTCCGCGCCATCATGGGCGCCATGCCCGAGGCTGAGAAGCGCTACCGCCAGCTAC ACGAGACGGAGATGCACCCTGCCGGAACCCATCCGGCCAACGACGACGACGACG AC AATAATAATAATCAGATGATGCACTCCTGATTCCATCC A ATCATCCATCCATCCATCCA TAGACTAATTAAGATTTCTACGTACTACATACTACTCGTACGTACACTTTTTATATACACACATATATGTATGGAGAGCCCATATAATTAAAAAAGAGTGTGCATCAGCAGCGTGTGCATGATAGTGAACACGTTTTGTGTATACTACAAAATAACCGATGTTTCTCGTTAGCTGATATGTTGGTTGATAATAAACAGGCAGCCTA            ]
[+] EMBL OSR3326A             [            TACAGTACATATCCATCTATCCGTCTGTTAGAGTAAAAATTCCCCATTTAATTAGGATCGATCGATTGGATTGAAGCTGGCGATGGCGAGCGGCGTGTGCCCTCCTGCGGAGCTGGGGTTCGGGGCGGAGTACTACTCGGTGGTGAACGGGGTGTGCAGCCGCGCCGGCAGCTACTTCGGCGGAAGGCCGGTGCTCACGCAGGCCGTCGGGTACGCCGTCGTGCTCGGCTTCGGCGCCTTCTTCGCGCTCTTCACCTCCTTCCTGGTGTGGCTTGAGAAGCGTTACGTCGGGTNGCAGCACACGTCGGAGTGGTTCAACACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU056606             [                                                                                                                                                                                                                                                                                    GGTGTGGCTTGAGAAGCGTTACGTCGGGTCGCAGCACACGTCGGAGTGGTTCAACACGGCGGGGCGCA CGTGAAGACGGGTCTGATCGCCAGCGTGATCGTGTCGCAGTGGACCTGGGCCGCCACCATCCTGCAGAGCTCGAACGTGGCATGGCAGTACGGGGTGAGCGGGCCATTCTGGTACGCCAGCGGCGCCACCATCCAGGTGCTCCTCTTCGGCGTGATGGCCATCGAGATCAAGCGCAAGGCCCCCAACGCCCACACCGTCTGCGAGATCGTCCGCGCCCGATGGGGCACCCCCGCCCACNTCGTCTTCCTCACCTTCTGCCTCCTCACCAACGTCATCGTCACCGCCATGCTCCTCCTTGGCGGCTCCGCCGTTCGTTCAACGGCCCTCACCGGAGTCAACGTCTTACGCCGCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI813522             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gtGCGT GCCTGC CTGTCTCT CC GCGAGGAGGTACACCCCTTGGCTAC TTCAC CTGT GGCC CGGTGGCGATCGCGTGGGGGACTGTGGGCT CGGTCGTCATCAT CCTTC TGCCGGTGGCCGAGAGCTGGACCACCATCACCAAGGTCTGCGCCGGCATGTTCACCAACGACGCTGTGTACGACCGCCTCGACGACGTCAACCTCCGCCTCCGCGCCATCATGGGCGCCATGCCCGAGGCTGAGAAGCGCTACCGCCAGCTAC ACGAGACGGAGATGCACCCTGCCGGAACCCATCCGGCCAACGACGACGACGACG AC AATAATAATAATCAGATGATGCACTCCTGATTCCATCC A ATCATCCATCCATCCATCCACTAGACTAATTAAGATTTCTACGTACTATATACTACTCGTACGTACACTTTTTATATACACACATATATGTATGGAGAGCCTATATAATTAAAAAAGAGTGTGCATCAGCAGCGTGTGCATGATAGTGAACACGTTTTGTGTATACTACCAAATAACCGATGTTTCTCaaaaaaaaa                                          ]
[+] EMBL BM038340             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACA  CTTTGCTTACTTTCACTCTGT GGCCCCGGT GCGATCGCGTGGGGGACTGTGGGCT C GTCGTCATCAT CCTTC T CCGGTGGCCGAGAGCTGGACCACCATCACCAAGGTCTGCGCCGGCATGTTCACCAACGACGCTGTGTACGACCGCCTCGACGACGTCAACCTCCGCCTCCGCGCCATCATGGGCGCCATGCCCGAGGCTGAGAAGCGCTACCGCCAGCTAC ACGAGACGGAGATGCACCCTGCCGGAACCCATCCGGCCAACGACGACGACGACG AC AATAATAATAATCAGATGATGCACTCCTGATTCCATCC ACATCATCCATCCATCCATCCA TAGACTAATTAAGATTTCTACGTACTATATACTACTCGTACGTACACTTTTTATATACACACATATATGTATGGAGACCCTATATAATTAAAAAAGAGTGTCCATCA CAGCGTGTCCATGATAGTGAACCCCTTTTGTGTATACTAC AAATAAaaa                                                            ]
[+] EMBL BM038324             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGATCGCGTGGGGGACTGTGGGCT CGTTCGTCATCAT CCTTC T CC GT GCCGAGAGCTGGACCACCATCACCAAGGTCTGCGCCGGCATGTTCACCAACGACGCTGTGTACGACCGCCTCGACGACGTCAACCTCCGCCTCCGCGCCATCATGGGCGCCATGCCCGAGGCTGAGAAGCGCTACCGCCAGCTACAACGAGACGGAGATGCACCCTGCCGGAACCCATCCGGCCAACGACGACGACGACGCACAAATAATAATAATCAGATGATGCACTCCTGATTCCATCCAA ATCATCCATCCATCCATCCA TAGACTAATTAAGATTTCTACGTACTATATACTACTCGTACGTACACTTTTTATATACACACATATATGTATGGAGACCCTATATAATTAAAAAAa                                                                                                                          ]
[+] EMBL AU056607             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                gtTGGGCTCCGGTCGTCATCATCCCTTCTTNCCGGTGGCCNAGAGTTGGACCACCATCACCAAGGTCTGCGCCGGCATGTTCACCAACGACGCTGTGTACGACCGCCTCGACGACGTCAACCTCCGCCTCCGCGCCATCATGGGCGCCATGCCCGAGGCTGAGAAGCGCTACCGCCAGCTAC ACGAGACGGAGATGCACCCTGCCGGAACCCATCCGGCCAACGACGACGACGACG AC AATAATAATAATCAGATGATGCACTCCTGATTCCATCC A ATCATCCATCCATCCATCCA TAGACTAATTAAGATTTCTACGTACTACATACTACTCGTACGTACACTTTTTATATACACACATATATGTATGGAGAGCCCATATAATTAAAAAAGAGTGTGCATCAGCAGCGTGTGCATGATAGTGAACACGTTTTGTGTATACTACAAAATAACCGATGTTTCTCGTTAGCTGATATGTTGGTTGATAATAAACAGGCAGCCTACGTCAAAAAAAA]


>consensus_11938#0 TCTGCTAGCTAGTACAGTACATATCCATCTATCCGTCTGTTAGAGTAAAAATTCCCCATT TAATTAGGATCGATCGATTGGATTGAAGCTGGCGATGGCGAGCGGCGTGTGCCCTCCTGC GGAGCTGGGGTTCGGGGCGGAGTACTACTCGGTGGTGAACGGGGTGTGCAGCCGCGCCGG CAGCTACTTCGGCGGAAGGCCGGTGCTCACGCAGGCCGTCGGGTACGCCGTCGTGCTCGG CTTCGGCGCCTTCTTCGCGCTCTTCACCTCCTTCCTGGTGTGGCTTGAGAAGCGTTACGT CGGGTCGCAGCACACGTCGGAGTGGTTCAACACGGCGGGGCGCAGCGTGAAGACGGGTCT GATCGCCAGCGTGATCGTGTCGCAGTGGACCTGGGCCGCCACCATCCTGCAGAGCTCGAA CGTGGCATGGCAGTACGGGGTGAGCGGGCCATTCTGGTACGCCAGCGGCGCCACCATCCA GGTGCTCCTCTTCGGCGTGATGGCCATCGAGATCAAGCGCAAGGCCCCCAACGCCCACAC CGTCTGCGAGATCGTCCGCGCCCGATGGGGCACCCCCGCCCACCTCGTCTTCCTCACCTT CTGCCTCCTCACCAACGTCATCGTCACCGCCATGCTCCTCCTTGGCGGCTCCGCCGTCGT CAACGCCCTCACCGGAGTCAACGTCTACGCCGCCAGCTTCCTCATCCCGCTCGGCGTCGT CGTCTACACACTCGCCGGCGGCCTCAAGGCCACCTTCCTCGCCAGCTACATCCACTCCGT CGTCGTGCACGCGGTGCTCGTCGTCTTCGTCTTCCTCGTCTACACCTCCAGCTCCAAACT CGGGAGCCCGCGTGTGGTGTATGATCGCCTCATGGCCGTCGCCAGCGCCGCGCGCGACTG CTCCGCCGACCTCTCGCGCAACGGCCAGGCGTGCGGCCCCGTCGCCGGCAACTTCAAGGG CTCCTACCTCACCATGCTCAGCTCGGGGGGCTCGTCTTCGGCATCATCAACATCGTCGGC AACTTTGGAACGGTGTTCGTAGACAACGGCTACTGGATGAGCGCCATCGCCGCCCGGCCA TCCTCCACCCACAAGGGCTACCTGCTGGGCGGCCTCGTGTGGTTCGCCGTTCCCTTCTCG CTGGCCACCTCGCTCGGCCTCGGCGCGCTCGCCCTGGACCTCCCGCTCACCGCCGCCGAG GCAGCCAAGGGCCTGGTGCCCCCGGCCACCGCAACAGCGCTCATGGGCAAGTCCGGCTCC GTCCTGCTACTCACCATGCTCTTCATGGCCGTCACATCCGCCGGCTCCGCCGAGCTGGTG GCCGTCTCCTCCCTCTGCACCTACGACATCTACCGGACGTACCTCAACCCGGGCGCCTCC GGCAAGCAGATACTCCGCGTGTCGAGGGCCGTCGTGCTCGGCTTCGGCTGCTTCATGGGG GTCCTCGCCGTGGTGCTCAACGTGGCGGGGGTGTCCCTGGGGTGGATGTACCTGGCCATG GGAGTCATTGTGGGATCCGCAGTCATCCCCATCGCCCTGCTGCTGCTGTGGAGCAAGGCC AACGCGGTGGGCGCCATGGGCGGCGCGGTGTCCGGCTGCGCGCTGGGCGTGGCCGTGTGG CTCACGGTGGCCAAGGTGCAGTACGGGCGCGTGAACCTGGACACCACAGGTCGGAACGCG CCGATGCTGGCGGGCAACCTGGTGTCCATCCTGGTGGGCGGGGCGGTGCACGCGGCGTGC AGCCTGCTGCGCCCGCAGCACTACGACTGGGGGACCAGCCGGGAGATGATCACCACGGTG GAGAGCGTGCATGCCGCGCTGGACGACGAGCTCAAGGAGGAGCGCCTGGTGCACGCCAAG CGTTGGATCGTCAGGTGGGGCCTCGTCTTCACCGCCGTCATCGTCGTGGCGTGGCCTGCG CTGTCTCTGCCGGCGAGGAGGTACAGCCTTGGCTACTTCACGCTGTGGCCGCGGTGGCGA TCGCGTGGGGGACTGTGGGCTCGGTCGTCATCATCCTTCTGCCGGTGGCCGAGAGCTGGA CCACCATCACCAAGGTCTGCGCCGGCATGTTCACCAACGACGCTGTGTACGACCGCCTCG ACGACGTCAACCTCCGCCTCCGCGCCATCATGGGCGCCATGCCCGAGGCTGAGAAGCGCT ACCGCCAGCTACACGAGACGGAGATGCACCCTGCCGGAACCCATCCGGCCAACGACGACG ACGACGACAATAATAATAATCAGATGATGCACTCCTGATTCCATCCAATCATCCATCCAT CCATCCATAGACTAATTAAGATTTCTACGTACTATATACTACTCGTACGTACACTTTTTA TATACACACATATATGTATGGAGAGCCTATATAATTAAAAAAGAGTGTGCATCAGCAGCG TGTGCATGATAGTGAACACGTTTTGTGTATACTACAAAATAACCGATGTTTCTCGTTAGC TGATATGTTGGTTGATAATAAACAGGCAGCCTACGTCAAAAAAAA



consensusID : consensus_11938#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence
                              [GGCGCCTTGGTGCACCCCCCAAGCGTTTGGTTCGTCCAGGTGGGCCTCTTCTTTCACCCCGTCAATCTTCCGTGGCGTTGCCTGCGCTGTCTCTGCCGGCGAGGAGGTACACCCTTGGCTACTTCACGCTGTGGCCCCGGTGGCGATCGCGTGGGGGACTGTGGGCTCGGTCGTCATCATCCTTCTGCCGGTGGCCGAGAGCTGGACCCCCATCACCCAGGTCTGCGCCGGCATGTTCACCCACGACGCTGTGTACGACCGCCTCGACGACGTCAACCTCCGCCTCCGCGCCATCATGGGCGCCATGCCCGAGGCTGAGAAGCGCTACCGCCAGCTACACGAGACGGAGATGCACCCTGCCGGAACCCATCCGGCCAACGACGACGACGACGACCATAATAATAATCAGATGATGCACTCCTGATTCCATCCCATCATCCATCCATCCATCCATAGACTAATTAAGATTTCTACGTACTATATACTACTCGTACGTACCCTTTTTATATACACACATATATGTATGGAGAGCCTATATAATTAAAAAAGAGTGTGCATCAGCCGCGTGTGCCAAAAAAAAAA]

[+] EMBL BI811744             [GGCGCCTTGGTGCACCCCCCAAGCGTTTGGTTCGTCCAGGTGGGCCTCTTCTTTCACCCCGTCAATCTTCCGTGGCGTTGCCTGCGCTGTCTCTGCCGGCGAGGAGGTACACCCTTGGCTACTTCACGCTGTGGCCCCGGTGGCGATCGCGTGGGGGACTGTGGGCTCGGTCGTCATCATCCTTCTGCCGGTGGCCGAGAGCTGGACCCCCATCACCCAGGTCTGCGCCGGCATGTTCACCCACGACGCTGTGTACGACCGCCTCGACGACGTCAACCTCCGCCTCCGCGCCATCATGGGCGCCATGCCCGAGGCTGAGAAGCGCTACCGCCAGCTACACGAGACGGAGATGCACCCTGCCGGAACCCATCCGGCCAACGACGACGACGACGACCATAATAATAATCAGATGATGCACTCCTGATTCCATCCCATCATCCATCCATCCATCCATAGACTAATTAAGATTTCTACGTACTATATACTACTCGTACGTACCCTTTTTATATACACACATATATGTATGGAGAGCCTATATAATTAAAAAAGAGTGTGCATCAGCCGCGTGTGCCAAAAAAAAAA]


>consensus_11938#1 GGCGCCTTGGTGCACCCCCCAAGCGTTTGGTTCGTCCAGGTGGGCCTCTTCTTTCACCCC GTCAATCTTCCGTGGCGTTGCCTGCGCTGTCTCTGCCGGCGAGGAGGTACACCCTTGGCT ACTTCACGCTGTGGCCCCGGTGGCGATCGCGTGGGGGACTGTGGGCTCGGTCGTCATCAT CCTTCTGCCGGTGGCCGAGAGCTGGACCCCCATCACCCAGGTCTGCGCCGGCATGTTCAC CCACGACGCTGTGTACGACCGCCTCGACGACGTCAACCTCCGCCTCCGCGCCATCATGGG CGCCATGCCCGAGGCTGAGAAGCGCTACCGCCAGCTACACGAGACGGAGATGCACCCTGC CGGAACCCATCCGGCCAACGACGACGACGACGACCATAATAATAATCAGATGATGCACTC CTGATTCCATCCCATCATCCATCCATCCATCCATAGACTAATTAAGATTTCTACGTACTA TATACTACTCGTACGTACCCTTTTTATATACACACATATATGTATGGAGAGCCTATATAA TTAAAAAAGAGTGTGCATCAGCCGCGTGTGCCAAAAAAAAAA



consensusID : consensus_11938#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence
                              [GAATGAATCAGATGGATGGCACTGCCTGGATGTGCCATGCCTATGCATGCCATGCCATGCCATGCCATGAGACTGAATTGATAGGATTGTGCTGACCGGTGACTGATGATGACTGACTGCGTACGTACACTTTTTATATACACACAGATATGTATGGAGAGCCTATATAATTAAAAAAGAGTGTGCATCAGCAGCGTGTGCATGATAGTGAACACGTTTTGTGTATACTACAAATAACCGATGTTTCTCCAAAAAAAAAA]

[+] EMBL BI813370             [GAATGAATCAGATGGATGGCACTGCCTGGATGTGCCATGCCTATGCATGCCATGCCATGCCATGCCATGAGACTGAATTGATAGGATTGTGCTGACCGGTGACTGATGATGACTGACTGCGTACGTACACTTTTTATATACACACAGATATGTATGGAGAGCCTATATAATTAAAAAAGAGTGTGCATCAGCAGCGTGTGCATGATAGTGAACACGTTTTGTGTATACTACAAATAACCGATGTTTCTCCAAAAAAAAAA]


>consensus_11938#2 GAATGAATCAGATGGATGGCACTGCCTGGATGTGCCATGCCTATGCATGCCATGCCATGC CATGCCATGAGACTGAATTGATAGGATTGTGCTGACCGGTGACTGATGATGACTGACTGC GTACGTACACTTTTTATATACACACAGATATGTATGGAGAGCCTATATAATTAAAAAAGA GTGTGCATCAGCAGCGTGTGCATGATAGTGAACACGTTTTGTGTATACTACAAATAACCG ATGTTTCTCCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11938#0      TCTGCTAGCTAGTACAGTACATATCCATCTATCCGTCTGTTAGAGTAAAAATTCCCCATT 60
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      TAATTAGGATCGATCGATTGGATTGAAGCTGGCGATGGCGAGCGGCGTGTGCCCTCCTGC 120
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      GGAGCTGGGGTTCGGGGCGGAGTACTACTCGGTGGTGAACGGGGTGTGCAGCCGCGCCGG 180
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CAGCTACTTCGGCGGAAGGCCGGTGCTCACGCAGGCCGTCGGGTACGCCGTCGTGCTCGG 240
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CTTCGGCGCCTTCTTCGCGCTCTTCACCTCCTTCCTGGTGTGGCTTGAGAAGCGTTACGT 300
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CGGGTCGCAGCACACGTCGGAGTGGTTCAACACGGCGGGGCGCAGCGTGAAGACGGGTCT 360
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      GATCGCCAGCGTGATCGTGTCGCAGTGGACCTGGGCCGCCACCATCCTGCAGAGCTCGAA 420
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CGTGGCATGGCAGTACGGGGTGAGCGGGCCATTCTGGTACGCCAGCGGCGCCACCATCCA 480
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      GGTGCTCCTCTTCGGCGTGATGGCCATCGAGATCAAGCGCAAGGCCCCCAACGCCCACAC 540
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CGTCTGCGAGATCGTCCGCGCCCGATGGGGCACCCCCGCCCACCTCGTCTTCCTCACCTT 600
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CTGCCTCCTCACCAACGTCATCGTCACCGCCATGCTCCTCCTTGGCGGCTCCGCCGTCGT 660
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CAACGCCCTCACCGGAGTCAACGTCTACGCCGCCAGCTTCCTCATCCCGCTCGGCGTCGT 720
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CGTCTACACACTCGCCGGCGGCCTCAAGGCCACCTTCCTCGCCAGCTACATCCACTCCGT 780
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CGTCGTGCACGCGGTGCTCGTCGTCTTCGTCTTCCTCGTCTACACCTCCAGCTCCAAACT 840
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CGGGAGCCCGCGTGTGGTGTATGATCGCCTCATGGCCGTCGCCAGCGCCGCGCGCGACTG 900
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CTCCGCCGACCTCTCGCGCAACGGCCAGGCGTGCGGCCCCGTCGCCGGCAACTTCAAGGG 960
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CTCCTACCTCACCATGCTCAGCTCGGGGGGCTCGTCTTCGGCATCATCAACATCGTCGGC 1020
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      AACTTTGGAACGGTGTTCGTAGACAACGGCTACTGGATGAGCGCCATCGCCGCCCGGCCA 1080
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      TCCTCCACCCACAAGGGCTACCTGCTGGGCGGCCTCGTGTGGTTCGCCGTTCCCTTCTCG 1140
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CTGGCCACCTCGCTCGGCCTCGGCGCGCTCGCCCTGGACCTCCCGCTCACCGCCGCCGAG 1200
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      GCAGCCAAGGGCCTGGTGCCCCCGGCCACCGCAACAGCGCTCATGGGCAAGTCCGGCTCC 1260
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      GTCCTGCTACTCACCATGCTCTTCATGGCCGTCACATCCGCCGGCTCCGCCGAGCTGGTG 1320
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      GCCGTCTCCTCCCTCTGCACCTACGACATCTACCGGACGTACCTCAACCCGGGCGCCTCC 1380
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      GGCAAGCAGATACTCCGCGTGTCGAGGGCCGTCGTGCTCGGCTTCGGCTGCTTCATGGGG 1440
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      GTCCTCGCCGTGGTGCTCAACGTGGCGGGGGTGTCCCTGGGGTGGATGTACCTGGCCATG 1500
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      GGAGTCATTGTGGGATCCGCAGTCATCCCCATCGCCCTGCTGCTGCTGTGGAGCAAGGCC 1560
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      AACGCGGTGGGCGCCATGGGCGGCGCGGTGTCCGGCTGCGCGCTGGGCGTGGCCGTGTGG 1620
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CTCACGGTGGCCAAGGTGCAGTACGGGCGCGTGAACCTGGACACCACAGGTCGGAACGCG 1680
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CCGATGCTGGCGGGCAACCTGGTGTCCATCCTGGTGGGCGGGGCGGTGCACGCGGCGTGC 1740
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      AGCCTGCTGCGCCCGCAGCACTACGACTGGGGGACCAGCCGGGAGATGATCACCACGGTG 1800
consensus_11938#1      ------------------------------------------------------------
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      GAGAGCGTGCATGCCGCGCTGGACGACGAGCTCAAGGAGGAGCGCCTGGTGCACGCC--A 1858
consensus_11938#1      --------------------------------------GGCGC-CTTGGTGCACCCCCCA 21
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      AGCGTT-GGATCGTCAGGTGGGGCCTCGTCTTCACCGCCGTCATCGT--CGTGGCGTGGC 1915
consensus_11938#1      AGCGTTTGGTTCGTCCAGGTGGGCCTCTTCTTTCACCCCGTCAATCTTCCGTGGCGTTGC 81
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CTGCGCTGTCTCTGCCGGCGAGGAGGTACAGCCTTGGCTACTTCACGCTGTGGCCGCGGT 1975
consensus_11938#1      CTGCGCTGTCTCTGCCGGCGAGGAGGTACACCCTTGGCTACTTCACGCTGTGGCCCCGGT 141
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      GGCGATCGCGTGGGGGACTGTGGGCTCGGTCGTCATCATCCTTCTGCCGGTGGCCGAGAG 2035
consensus_11938#1      GGCGATCGCGTGGGGGACTGTGGGCTCGGTCGTCATCATCCTTCTGCCGGTGGCCGAGAG 201
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CTGGACCACCATCACCAAGGTCTGCGCCGGCATGTTCACCAACGACGCTGTGTACGACCG 2095
consensus_11938#1      CTGGACCCCCATCACCCAGGTCTGCGCCGGCATGTTCACCCACGACGCTGTGTACGACCG 261
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      CCTCGACGACGTCAACCTCCGCCTCCGCGCCATCATGGGCGCCATGCCCGAGGCTGAGAA 2155
consensus_11938#1      CCTCGACGACGTCAACCTCCGCCTCCGCGCCATCATGGGCGCCATGCCCGAGGCTGAGAA 321
consensus_11938#2      ------------------------------------------------------------
                                                                                   

consensus_11938#0      GCGCTACCGCCAGCTACACGAGACGGAGATGCACCCTGCCGGAACCCATCCGGCCAACGA 2215
consensus_11938#1      GCGCTACCGCCAGCTACACGAGACGGAGATGCACCCTGCCGGAACCCATCCGGCCAACGA 381
consensus_11938#2      -----------------------------------------GAATGAATCAGATGGATGG 19
                                                                ***   *** *    * * 

consensus_11938#0      CGACGACGACGACAATAATAATAATCAGATGATGCACTCCTGATTCCATCCAATCATCCA 2275
consensus_11938#1      CGACGACGACGACCATAATAATAATCAGATGATGCACTCCTGATTCCATCCCATCATCCA 441
consensus_11938#2      C-------ACTGCCTGGATG-TGCCATGCCTATGCATGCC--ATGCCATGCCATGCCATG 69
                       *       **  *    **  *     *   *****  **  ** **** * **      

consensus_11938#0      TCCATCCATCCATAGACTAATTAAGATTTCTACGTACTATATACT-ACT-CGTACGTACA 2333
consensus_11938#1      TCCATCCATCCATAGACTAATTAAGATTTCTACGTACTATATACT-ACT-CGTACGTACC 499
consensus_11938#2      AGACTGAATTGATAGGATTGTGCTGACCGGTGACTGATGATGACTGACTGCGTACGTACA 129
                           *  **  ****  *  *   **    *   *  *    *** *** ********* 

consensus_11938#0      CTTTTTATATACACACATATATGTATGGAGAGCCTATATAATTAAAAAAGAGTGTGCATC 2393
consensus_11938#1      CTTTTTATATACACACATATATGTATGGAGAGCCTATATAATTAAAAAAGAGTGTGCATC 559
consensus_11938#2      CTTTTTATATACACACAGATATGTATGGAGAGCCTATATAATTAAAAAAGAGTGTGCATC 189
                       ***************** ******************************************

consensus_11938#0      AGCAGCGTGTGCATGATAGTGAACACGTTTTGTGTATACTACAAAATAACCGATGTTTCT 2453
consensus_11938#1      AGCCGCGTGTGCCAAAAAAAAAA------------------------------------- 582
consensus_11938#2      AGCAGCGTGTGCATGATAGTGAACACGTTTTGTGTATACTACAAATAACCGATGTTTCTC 249
                       *** ********   * *   **                                     

consensus_11938#0      CGTTAGCTGATATGTTGGTTGATAATAAACAGGCAGCCTACGTCAAAAAAAA 2505
consensus_11938#1      ----------------------------------------------------
consensus_11938#2      CAAAAAAAAAA----------------------------------------- 260
                                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)