cluster # 1194

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1194 cluster # 1194 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1194#0 length = 648 sequences # 1

consensus_1194#1 length = 620 sequences # 1

consensusID : consensus_1194#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [TCATGAAAGAAGGACGAGATTTAATTACTTTCACACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTACTACACCACCATTGAAGCAATTACATGTTAAAGCAAATCTGTCATACATGACTTATTTAGCACACACAAACATACATATTATGTACCATTCAACTGCTTCTTAGTGCCAACCACCACCACCATATCCTCCACCGTAACCCCCACCACCACCGTATCCACCTCCGTATCCACCGCCATATCCTCCACCCGAACCCCCATACCCGCCACCATACCCACGTCCATATCCACCGCCGTAGCCACCACCATACCCAGGATGACCATATCCTCCACCGTACCCAGGACGACCATATCCTCCACCGTACCCACCACCATATCCATATCCTCCACCGGGGTAGTATCCACCTCCCCACTTTTGATCCTCAACCCCTGGCCCTCCCGTAGGTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAGTGAGCTCTCTTGCATGAGCTACATCATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGACACCAAGGACAAGAAAATTCTTGAGAGCCATTTCTGACGATGACCAGTTTGA]

[+] EMBL CB628056             [TCATGAAAGAAGGACGAGATTTAATTACTTTCACACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTACTACACCACCATTGAAGCAATTACATGTTAAAGCAAATCTGTCATACATGACTTATTTAGCACACACAAACATACATATTATGTACCATTCAACTGCTTCTTAGTGCCAACCACCACCACCATATCCTCCACCGTAACCCCCACCACCACCGTATCCACCTCCGTATCCACCGCCATATCCTCCACCCGAACCCCCATACCCGCCACCATACCCACGTCCATATCCACCGCCGTAGCCACCACCATACCCAGGATGACCATATCCTCCACCGTACCCAGGACGACCATATCCTCCACCGTACCCACCACCATATCCATATCCTCCACCGGGGTAGTATCCACCTCCCCACTTTTGATCCTCAACCCCTGGCCCTCCCGTAGGTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAGTGAGCTCTCTTGCATGAGCTACATCATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGACACCAAGGACAAGAAAATTCTTGAGAGCCATTTCTGACGATGACCAGTTTGA]




>consensus_1194#0
TCATGAAAGAAGGACGAGATTTAATTACTTTCACACATGCCATATTACAATACTAGATTC
TAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTAC
TACACCACCATTGAAGCAATTACATGTTAAAGCAAATCTGTCATACATGACTTATTTAGC
ACACACAAACATACATATTATGTACCATTCAACTGCTTCTTAGTGCCAACCACCACCACC
ATATCCTCCACCGTAACCCCCACCACCACCGTATCCACCTCCGTATCCACCGCCATATCC
TCCACCCGAACCCCCATACCCGCCACCATACCCACGTCCATATCCACCGCCGTAGCCACC
ACCATACCCAGGATGACCATATCCTCCACCGTACCCAGGACGACCATATCCTCCACCGTA
CCCACCACCATATCCATATCCTCCACCGGGGTAGTATCCACCTCCCCACTTTTGATCCTC
AACCCCTGGCCCTCCCGTAGGTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAGTGAG
CTCTCTTGCATGAGCTACATCATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGACACC
AAGGACAAGAAAATTCTTGAGAGCCATTTCTGACGATGACCAGTTTGA

consensusID : consensus_1194#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [TCAAACTGGTCATCGTCAGAAATGGCTCTCAAGAATTTTCTTGTCCTTGGTGTCTTCCTGGCTGCCCTGCTCATGTTCTCCCTGGATGATGTAGCTCATGCAAGAGAGCTCACTGAAGCCAATGAATCTGAGGGAAAGAACGTAAAACCTACGGGAGGGCCAGGGGTTGAGGATCAAAAGTGGGGAGGTGGATACTACCCCGGTGGAGGATATGGACACGATGTCGTCCACGGTAACCCCCACCACCACCGTATCCACCTCCGTATCCACCGCCATATCCTCCACCCGAACCCCCATACCCGCCACCATACCCACGTCCATATCCACCGCCGTAGCCACCACCATACCCAGGATGACCATATCCTCCACCGTACCCAGGACGACCATATCCTCCACCGTACCCACCACCATATCCATATCCTCCACCGGGGTAGTATCCACCTCCCCACTTTTGATCCTCAACCCCTGGCCCTCCCGTAGGTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAGTGAGCTCTCTTGCATGAGCTACATCATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGACACCAAGGACAAGAAAATTCTTGAGAGCCATTTCTGACGATGAC]

[-] EMBL CB628055             [TCAAACTGGTCATCGTCAGAAATGGCTCTCAAGAATTTTCTTGTCCTTGGTGTCTTCCTGGCTGCCCTGCTCATGTTCTCCCTGGATGATGTAGCTCATGCAAGAGAGCTCACTGAAGCCAATGAATCTGAGGGAAAGAACGTAAAACCTACGGGAGGGCCAGGGGTTGAGGATCAAAAGTGGGGAGGTGGATACTACCCCGGTGGAGGATATGGACACGATGTCGTCCACGGTAACCCCCACCACCACCGTATCCACCTCCGTATCCACCGCCATATCCTCCACCCGAACCCCCATACCCGCCACCATACCCACGTCCATATCCACCGCCGTAGCCACCACCATACCCAGGATGACCATATCCTCCACCGTACCCAGGACGACCATATCCTCCACCGTACCCACCACCATATCCATATCCTCCACCGGGGTAGTATCCACCTCCCCACTTTTGATCCTCAACCCCTGGCCCTCCCGTAGGTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAGTGAGCTCTCTTGCATGAGCTACATCATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGACACCAAGGACAAGAAAATTCTTGAGAGCCATTTCTGACGATGAC]




>consensus_1194#1
TCAAACTGGTCATCGTCAGAAATGGCTCTCAAGAATTTTCTTGTCCTTGGTGTCTTCCTG
GCTGCCCTGCTCATGTTCTCCCTGGATGATGTAGCTCATGCAAGAGAGCTCACTGAAGCC
AATGAATCTGAGGGAAAGAACGTAAAACCTACGGGAGGGCCAGGGGTTGAGGATCAAAAG
TGGGGAGGTGGATACTACCCCGGTGGAGGATATGGACACGATGTCGTCCACGGTAACCCC
CACCACCACCGTATCCACCTCCGTATCCACCGCCATATCCTCCACCCGAACCCCCATACC
CGCCACCATACCCACGTCCATATCCACCGCCGTAGCCACCACCATACCCAGGATGACCAT
ATCCTCCACCGTACCCAGGACGACCATATCCTCCACCGTACCCACCACCATATCCATATC
CTCCACCGGGGTAGTATCCACCTCCCCACTTTTGATCCTCAACCCCTGGCCCTCCCGTAG
GTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAGTGAGCTCTCTTGCATGAGCTACAT
CATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGACACCAAGGACAAGAAAATTCTTGA
GAGCCATTTCTGACGATGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1194#0      TCATGAAAGAAGGACGAGATTTAATTACTTTCACACATGCCATATTACAATACTAGATTC 60
consensus_1194#1      ---------------TCAAACTGGTCATCGTCAGAAATGGCTCTCAAGAATTTTCTTGTC 45
                                        *  *  * *   *** * *** *     * ***  *    **

consensus_1194#0      TAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTAC 120
consensus_1194#1      CTTGGTGTCTTCCTGGC-------TGCCCTGCTCATGTTCTCCCTGGATGATGTAGCTCA 98
                           *   * * **         * **   *  * **    * *  * * * *  **  

consensus_1194#0      TACACCA----CCATTGAAGCAATTACATGTTAAAGCAAATCTGTCATACATGACTTATT 176
consensus_1194#1      TGCAAGAGAGCTCACTGAAGCCAATGAATCTGAGGGAAAGAACGTAAAACCT-ACGGGAG 157
                      * **  *     ** ****** * *  ** * *  * **    ** * ** * **     

consensus_1194#0      TAGCACACACAAACATACATATTATGTACCATTCAACTGCTTCTTAGTGCCAACCACCAC 236
consensus_1194#1      GGCCAGGGGTTGAGGATCAAAA-GTGGGGAGGTGGATACTACCCCGGTGGAGGATATGGA 216
                         **       *    ** *   **      *  *      *   ***      *    

consensus_1194#0      CACCATATCCTCCACCGTAACCCCCACCACCACCGTATCCACCTCCGTATCCACCGCCAT 296
consensus_1194#1      CACGATGTCGTCCACGGTAACCCCCACCACCACCGTATCCACCTCCGTATCCACCGCCAT 276
                      *** ** ** ***** ********************************************

consensus_1194#0      ATCCTCCACCCGAACCCCCATACCCGCCACCATACCCACGTCCATATCCACCGCCGTAGC 356
consensus_1194#1      ATCCTCCACCCGAACCCCCATACCCGCCACCATACCCACGTCCATATCCACCGCCGTAGC 336
                      ************************************************************

consensus_1194#0      CACCACCATACCCAGGATGACCATATCCTCCACCGTACCCAGGACGACCATATCCTCCAC 416
consensus_1194#1      CACCACCATACCCAGGATGACCATATCCTCCACCGTACCCAGGACGACCATATCCTCCAC 396
                      ************************************************************

consensus_1194#0      CGTACCCACCACCATATCCATATCCTCCACCGGGGTAGTATCCACCTCCCCACTTTTGAT 476
consensus_1194#1      CGTACCCACCACCATATCCATATCCTCCACCGGGGTAGTATCCACCTCCCCACTTTTGAT 456
                      ************************************************************

consensus_1194#0      CCTCAACCCCTGGCCCTCCCGTAGGTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAG 536
consensus_1194#1      CCTCAACCCCTGGCCCTCCCGTAGGTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAG 516
                      ************************************************************

consensus_1194#0      TGAGCTCTCTTGCATGAGCTACATCATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGA 596
consensus_1194#1      TGAGCTCTCTTGCATGAGCTACATCATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGA 576
                      ************************************************************

consensus_1194#0      CACCAAGGACAAGAAAATTCTTGAGAGCCATTTCTGACGATGACCAGTTTGA 648
consensus_1194#1      CACCAAGGACAAGAAAATTCTTGAGAGCCATTTCTGACGATGAC-------- 620
                      ********************************************