These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [TCATGAAAGAAGGACGAGATTTAATTACTTTCACACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTACTACACCACCATTGAAGCAATTACATGTTAAAGCAAATCTGTCATACATGACTTATTTAGCACACACAAACATACATATTATGTACCATTCAACTGCTTCTTAGTGCCAACCACCACCACCATATCCTCCACCGTAACCCCCACCACCACCGTATCCACCTCCGTATCCACCGCCATATCCTCCACCCGAACCCCCATACCCGCCACCATACCCACGTCCATATCCACCGCCGTAGCCACCACCATACCCAGGATGACCATATCCTCCACCGTACCCAGGACGACCATATCCTCCACCGTACCCACCACCATATCCATATCCTCCACCGGGGTAGTATCCACCTCCCCACTTTTGATCCTCAACCCCTGGCCCTCCCGTAGGTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAGTGAGCTCTCTTGCATGAGCTACATCATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGACACCAAGGACAAGAAAATTCTTGAGAGCCATTTCTGACGATGACCAGTTTGA] [+] EMBL CB628056 [TCATGAAAGAAGGACGAGATTTAATTACTTTCACACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTACTACACCACCATTGAAGCAATTACATGTTAAAGCAAATCTGTCATACATGACTTATTTAGCACACACAAACATACATATTATGTACCATTCAACTGCTTCTTAGTGCCAACCACCACCACCATATCCTCCACCGTAACCCCCACCACCACCGTATCCACCTCCGTATCCACCGCCATATCCTCCACCCGAACCCCCATACCCGCCACCATACCCACGTCCATATCCACCGCCGTAGCCACCACCATACCCAGGATGACCATATCCTCCACCGTACCCAGGACGACCATATCCTCCACCGTACCCACCACCATATCCATATCCTCCACCGGGGTAGTATCCACCTCCCCACTTTTGATCCTCAACCCCTGGCCCTCCCGTAGGTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAGTGAGCTCTCTTGCATGAGCTACATCATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGACACCAAGGACAAGAAAATTCTTGAGAGCCATTTCTGACGATGACCAGTTTGA] consensusID : consensus_1194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [TCAAACTGGTCATCGTCAGAAATGGCTCTCAAGAATTTTCTTGTCCTTGGTGTCTTCCTGGCTGCCCTGCTCATGTTCTCCCTGGATGATGTAGCTCATGCAAGAGAGCTCACTGAAGCCAATGAATCTGAGGGAAAGAACGTAAAACCTACGGGAGGGCCAGGGGTTGAGGATCAAAAGTGGGGAGGTGGATACTACCCCGGTGGAGGATATGGACACGATGTCGTCCACGGTAACCCCCACCACCACCGTATCCACCTCCGTATCCACCGCCATATCCTCCACCCGAACCCCCATACCCGCCACCATACCCACGTCCATATCCACCGCCGTAGCCACCACCATACCCAGGATGACCATATCCTCCACCGTACCCAGGACGACCATATCCTCCACCGTACCCACCACCATATCCATATCCTCCACCGGGGTAGTATCCACCTCCCCACTTTTGATCCTCAACCCCTGGCCCTCCCGTAGGTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAGTGAGCTCTCTTGCATGAGCTACATCATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGACACCAAGGACAAGAAAATTCTTGAGAGCCATTTCTGACGATGAC] [-] EMBL CB628055 [TCAAACTGGTCATCGTCAGAAATGGCTCTCAAGAATTTTCTTGTCCTTGGTGTCTTCCTGGCTGCCCTGCTCATGTTCTCCCTGGATGATGTAGCTCATGCAAGAGAGCTCACTGAAGCCAATGAATCTGAGGGAAAGAACGTAAAACCTACGGGAGGGCCAGGGGTTGAGGATCAAAAGTGGGGAGGTGGATACTACCCCGGTGGAGGATATGGACACGATGTCGTCCACGGTAACCCCCACCACCACCGTATCCACCTCCGTATCCACCGCCATATCCTCCACCCGAACCCCCATACCCGCCACCATACCCACGTCCATATCCACCGCCGTAGCCACCACCATACCCAGGATGACCATATCCTCCACCGTACCCAGGACGACCATATCCTCCACCGTACCCACCACCATATCCATATCCTCCACCGGGGTAGTATCCACCTCCCCACTTTTGATCCTCAACCCCTGGCCCTCCCGTAGGTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAGTGAGCTCTCTTGCATGAGCTACATCATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGACACCAAGGACAAGAAAATTCTTGAGAGCCATTTCTGACGATGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1194#0 TCATGAAAGAAGGACGAGATTTAATTACTTTCACACATGCCATATTACAATACTAGATTC 60 consensus_1194#1 ---------------TCAAACTGGTCATCGTCAGAAATGGCTCTCAAGAATTTTCTTGTC 45 * * * * *** * *** * * *** * ** consensus_1194#0 TAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTAC 120 consensus_1194#1 CTTGGTGTCTTCCTGGC-------TGCCCTGCTCATGTTCTCCCTGGATGATGTAGCTCA 98 * * * ** * ** * * ** * * * * * * ** consensus_1194#0 TACACCA----CCATTGAAGCAATTACATGTTAAAGCAAATCTGTCATACATGACTTATT 176 consensus_1194#1 TGCAAGAGAGCTCACTGAAGCCAATGAATCTGAGGGAAAGAACGTAAAACCT-ACGGGAG 157 * ** * ** ****** * * ** * * * ** ** * ** * ** consensus_1194#0 TAGCACACACAAACATACATATTATGTACCATTCAACTGCTTCTTAGTGCCAACCACCAC 236 consensus_1194#1 GGCCAGGGGTTGAGGATCAAAA-GTGGGGAGGTGGATACTACCCCGGTGGAGGATATGGA 216 ** * ** * ** * * * *** * consensus_1194#0 CACCATATCCTCCACCGTAACCCCCACCACCACCGTATCCACCTCCGTATCCACCGCCAT 296 consensus_1194#1 CACGATGTCGTCCACGGTAACCCCCACCACCACCGTATCCACCTCCGTATCCACCGCCAT 276 *** ** ** ***** ******************************************** consensus_1194#0 ATCCTCCACCCGAACCCCCATACCCGCCACCATACCCACGTCCATATCCACCGCCGTAGC 356 consensus_1194#1 ATCCTCCACCCGAACCCCCATACCCGCCACCATACCCACGTCCATATCCACCGCCGTAGC 336 ************************************************************ consensus_1194#0 CACCACCATACCCAGGATGACCATATCCTCCACCGTACCCAGGACGACCATATCCTCCAC 416 consensus_1194#1 CACCACCATACCCAGGATGACCATATCCTCCACCGTACCCAGGACGACCATATCCTCCAC 396 ************************************************************ consensus_1194#0 CGTACCCACCACCATATCCATATCCTCCACCGGGGTAGTATCCACCTCCCCACTTTTGAT 476 consensus_1194#1 CGTACCCACCACCATATCCATATCCTCCACCGGGGTAGTATCCACCTCCCCACTTTTGAT 456 ************************************************************ consensus_1194#0 CCTCAACCCCTGGCCCTCCCGTAGGTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAG 536 consensus_1194#1 CCTCAACCCCTGGCCCTCCCGTAGGTTTTACGTTCTTTCCCTCAGATTCATTGGCTTCAG 516 ************************************************************ consensus_1194#0 TGAGCTCTCTTGCATGAGCTACATCATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGA 596 consensus_1194#1 TGAGCTCTCTTGCATGAGCTACATCATCCAGGGAGAACATGAGCAGGGCAGCCAGGAAGA 576 ************************************************************ consensus_1194#0 CACCAAGGACAAGAAAATTCTTGAGAGCCATTTCTGACGATGACCAGTTTGA 648 consensus_1194#1 CACCAAGGACAAGAAAATTCTTGAGAGCCATTTCTGACGATGAC-------- 620 ******************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||