These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 389 fasta sequence [GGGCGGACGCGTGGGTTCTGGATTCCTCTCTACCCCCA-ACAATGGCCTGACACCG-CTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCA-CTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTAC-ATAGTAATAATCAGAA-CTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGAACTAGTATTTGTCATGGCAAAAAAAAAAAAA] [+] EMBL BI796462 [GGGCGGACGCGTGGGTTCTGGATTCCTCTCTACCCCCAGACAATGGCCTGACACCG CTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACCTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTAC ATAGTAATAATCAGAA CTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGAACTAGTATTTGTCATGGCAAAAAAAA ] [+] EMBL AA750667 [ TCTGGATTCCTCTCTACCCCCA ACAATGGCCTGACACCGACTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAAC GCCGATGCAGCGAAGGTATCCA CTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAAC AC TTGGCAGGTCTTCCTTCTCCAT TCGAC AG AGATGGT ATGGAGTGTCTAT ] [+] EMBL BI796836 [ CTCTACCCCCA ACAATGGCCTGACACCG CTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCA CTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTAC ATAGTAATAATCAGAACCTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGAACTAGTATTTGTCATGGCAAAAA ] [+] EMBL BI796218 [ CCG CTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCA CTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTACAATAGTAATAATCAGAA CTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGAACTAGTATTTGTCATGGCATCAAAAAAAAAA] consensusID : consensus_11951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 352 fasta sequence [GCCTGACACCGCTGCCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTC-TTCCTTCTCCATCTCCACAAG-AAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTACAATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGACACTAGTATTTGTCATGGCATCTTTTCT--AAAAAAAA] [+] EMBL BI798003 [GCCTGACACCGCTGCCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTC TTCCTTCTCCATCTCCACAAG AAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTACAATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGACACTAGTATTTGTCATGGCATCTTTTCT AAAAAAA ] [+] EMBL BI798237 [ GCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCATTCCTTCTCCATCTCGACAAGCAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTAC ATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGA ACTAGTATTTGTCATGGCATCTTTTCTTGAAAAAAAA] consensusID : consensus_11951#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 327 fasta sequence [TTCCTCTCTACCCCCAACAATGGCCTGACACCGCTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGATGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCATCATCATGTATCAGTTGTTCTATTACAATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAAAAAAAAAAAAAA] [+] EMBL AU162218 [TTCCTCTCTACCCCCAACAATGGCCTGACACCGCTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGATGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCATCATCATGTATCAGTTGTTCTATTACAATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAAAAAAAAAAAAAA] [+] EMBL OSC881 [ TCCTCTCTACCCCCAACAATGGCCTGANACCANTGCCCTGCATGCAACCCATGCAGTGTTCTNACTACTTCTAANCTTCGCCGGTGGTGTTGAAGATNATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGTTGCTAGGCCATGTNGGGCAACTAANCAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGNGTNTCTATATCCCCGGAGCTCTCTTGATAGATTTNATCATC ] consensusID : consensus_11951#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 131 fasta sequence [TTTTTTTTTTTTTTTTTTTTTAGTTCTGATTATTACTATTGGAATAGAACAACTGATACCTGATGACCAATTCTATCAAGAGAGCTCCGGGGATATAGACACTCCATTACCATCCCCTTGTCTCGGCCTCT] [+] EMBL CA761698 [TTTTTTTTTTTTTTTTTTTTTAGTTCTGATTATTACTATTGGAATAGAACAACTGATACCTGATGACCAATTCTATCAAGAGAGCTCCGGGGATATAGACACTCCATTACCATCCCCTTGTCTCGGCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11951#0 GGGCGGACGCGTGGGTTCTGGATTCCTCTCTACCCCCAACAATGGCCTGACACCGCTGCC 60 consensus_11951#2 ----------------------TTCCTCTCTACCCCCAACAATGGCCTGACACCGCTGCC 38 consensus_11951#1 --------------------------------------------GCCTGACACCGCTGCC 16 consensus_11951#3 ------------------------------------------------------------ consensus_11951#0 C-TGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGA 119 consensus_11951#2 C-TGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGA 97 consensus_11951#1 CCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGA 76 consensus_11951#3 ---------TTTTTTTTTTTTTTTTTTTTTAGTTCTGATTATTACTATTGGAATAGAACA 51 * * ** * ** **** * * * *** * *** * consensus_11951#0 --CGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTA 177 consensus_11951#2 --TGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTA 155 consensus_11951#1 --CGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTA 134 consensus_11951#3 ACTGATACCT-GATGACCAATTCTATCAAGAGAGCTCCGGGGATATAGACACTCCATT-- 108 *** *** * * ** ** * *** * * * ** * * **** consensus_11951#0 GGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGG 237 consensus_11951#2 GGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGG 215 consensus_11951#1 GGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCCACAAGAAGATGGTAATGG 194 consensus_11951#3 -----ACCATCC--CCTTGTCTCGGCCTCT------------------------------ 131 ** * * * *** * * * ** consensus_11951#0 AGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTAT 297 consensus_11951#2 AGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCATCATCATGTATCAGTTGTTCTAT 275 consensus_11951#1 AGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTAT 254 consensus_11951#3 ------------------------------------------------------------ consensus_11951#0 TACA-TAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGT 356 consensus_11951#2 TACAATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAAAAAAAAAAAAAA-------- 327 consensus_11951#1 TACAATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGT 314 consensus_11951#3 ------------------------------------------------------------ consensus_11951#0 GA-ACTAGTATTTGTCATGGCAAAAAAAAAAAAA---- 389 consensus_11951#2 -------------------------------------- consensus_11951#1 GACACTAGTATTTGTCATGGCATCTTTTCTAAAAAAAA 352 consensus_11951#3 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||