cluster # 11955

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Oryza sativa
cluster # 11955 cluster # 11955 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11955#0 length = 237 sequences # 8

consensus_11955#1 length = 159 sequences # 1

consensusID : consensus_11955#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 237
fasta sequence

                              [GCTCGACGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG-AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG]

[+] EMBL CF338671             [GCTCGACGGCTGTGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG TGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG]
[+] EMBL CF339601             [GCTCGACGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGG                                   ]
[+] EMBL CF339840             [ CTCGACGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG]
[+] EMBL CF340071             [  TCGACGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG]
[+] EMBL CF340011             [   CGACGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG]
[+] EMBL CF339146             [    GACGGCTGTGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACG                                                    ]
[+] EMBL CF340101             [      CGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG]
[+] EMBL CF339126             [                       TCGTCGGGCTGATCCGCTGCGCATCCGACCTGTAGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGTCGGTGATTAACTGATCTTTTATCCAATGA         ]




>consensus_11955#0
GCTCGACGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTGAGCCG
CTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCT
CGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGA
AGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG

consensusID : consensus_11955#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence

                              [CTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGACGGCGCTTTACCGGCCTAAAATACAAG]

[+] EMBL CF338964             [CTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGACGGCGCTTTACCGGCCTAAAATACAAG]




>consensus_11955#1
CTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGAC
GCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCG
GTCGTGCTCGGACGGCGCTTTACCGGCCTAAAATACAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11955#0      GCTCGACGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTGAGCCG 60
consensus_11955#1      ------------------------------------------------------------
                                                                                   

consensus_11955#0      CTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCT 120
consensus_11955#1      -------CTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCT 53
                              *****************************************************

consensus_11955#0      CGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGA 180
consensus_11955#1      CGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGA 113
                       ************************************************************

consensus_11955#0      AGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG 237
consensus_11955#1      AGACGCGGTCGTGCTCGGACGGCGCTTTACCGGCCTAAAATACAAG----------- 159
                       ****************** *** ** * ********   **  ***