cluster # 11957

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Oryza sativa
cluster # 11957 cluster # 11957 Sequences # 9 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11957#0 length = 875 sequences # 3
consensus_11957#1 length = 634 sequences # 1

consensus_11957#2 length = 633 sequences # 3
consensus_11957#3 length = 351 sequences # 1
consensus_11957#4 length = 224 sequences # 1

consensusID : consensus_11957#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 875
fasta sequence

                              [TTTGAGTTCAAGCATGCCAAAATGCATCGCCTCCAAGGTATGGCATCTCTTGGATGTGCTTTCTGCTTGGACTTGAATCTGCATTATTTGGTCCATGCTATCTTGCGACTTAAAGATCCATGGTTACACAACAGGGGATAAAGTTATCTAATGTAAATGCCCCCTCCTCTTTTCCTCTTTTTATTTTTTGTGGGTTTGTGGGGGTGTTGGGGTTTAGTTTAACTAATTGCTGGGGTGTGTGTATCTGCTATCTTTTGTAAGTTAGTGACAGGGTTTCCAGTTTTTTCTATTCACATTTACATTTTCTTTTCAACTTTATATGTCCCTTATCTAGTTGTTTCTGCTTCTTTTATTGTTTTAGTCAAATTTGAGAATAAGTGCAGATGGAATAGGATCCATCAGTGGCAGATTACTTTTAGGCACTGCCGAAATTATACCCTCTGAAGAGCTCATAGATACA-ACT-GGTGCGGGTGATGCATTTATCGGAGCAGTTCTCTACGGTTTATGCTCTGGCA-TGCCGCC-TGAGAAGATGCT-G-CCTTTT-GCAGCTCAAGTGGCTGC-TT-G-CGGGTG-CAGGGGTTTAGGGGCTCGGACTGCTC-TTCCCCATCGCACAGATCCCCGCCTGGTTGCCTATTGACTCGAGGAACTGTAGTGTATCCATCTGTGTTGGATCTGATTGGGATGGATTCATTGGATTGTGGGCGCCTATTGAAAAATAAGAGATTAACGCATTTGAAATATGGAGTAATAAGAAAGCCGCCTNCAGTTGAAATCGGTTCCTAAGTTGTATGTAAACCGTGATTGTTGTTGCATACTGTCAATATACCTTGGCTTGTGTTAATAAGAGAGATTTGTGTGCTGTTGTTG------CCAAAAAAAAAAAA]

[-] EMBL CB660617             [TTTGAGTTCAAGCATGCCAAAATGCATCGCCTCCAAGGTATGGCATCTCTTGGATGTGCTTTCTGCTTGGACTTGAATCTGCATTATTTGGTCCATGCTATCTTGCGACTTAAAGATCCATGGTTACACAACAGGGGATAAAGTTATCTAATGTAAATGCCCCCTCCTCTTTTCCTCTTTTTATTTTTTGTGGGTTTGTGGGGGTGTTGGGGTTTAGTTTAACTAATTGCTGGGGTGTGTGTATCTGCTATCTTTTGTAAGTTAGTGACAGGGTTTCCAGTTTTTTCTATTCACATTTACATTTTCTTTTCAACTTTATATGTCCCTTATCTAGTTGTTTCTGCTTCTTTTATTGTTTTAGTCAAATTTGAGAATAAGTGCAGATGGAATAGGATCCATCAGTGGCAGATTACTTTTAGGCACTGCCGAAATTATACCCTCTGAAGAGCTCATAGATACA ACT GGTGCGGGTGATGCATTTATCGGAGCAGTTCTCTACGGTTTATGCTCTGGCA TGCCGCC TGAGAAGATGCT G CCTTTT GCAGCTCAAGTGGCTGC TT G CGGGTG CAGGGGTTTAGGGGCTCGGACTGCTC TTCCCCATCGCACAGATC                                                                                                                                                                                                                                                                              ]
[+] EMBL BM419934             [                                                                                                                                                                                                                                                                                                                                                                                                                             TTTTAGGCACT CCGAAATTATACCCTCTGAAGAGCTCATAGATACACACT GGTGCGGGTGATGCATTTATCGGAGCAGTTCTCTACGGTTTATGCTCTGGCA TGCCGCC TGAGAAGATGCT G CCTTTT GCAGCTCAAGTGGCTGC TT G CGGGTGCCAGGGGTTTAGGGGCTCGGACTGCTC TTCCCCATCGCACAGATCCCCGCCTGGTTGCCTATTGACTCGAGGAACTGTAGTGTATCCATCTGTGTTGGATCTGATTGGGATGGATTCATTGGATTGTGGGCGCCTATTGAAAAATAAGAGATTAACGCATTTGAAATATGGAGTAATAAGAAAGCCGCCTNCAGTTGAAATCGGTTCCTAAGTTGTATGTAAACCGTGATTGTTGTTGCATACTGTCAATATACCTTGGCTTGTGTTAATAAGAGAGATTTGTGTGCTGTTGTTG      CCAAAAAAAAAA  ]
[+] EMBL AU163049             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATACCCTCTGAAGAGCTCATAGATACA ACTNGGTNCGGGTGATGCATTTANCGGAGCAGTTCTCTACGGTTTATGCTCTGGCATTGCCGCCTTGAGAAGATGCTNGCCCTTTTNGCAGCTCAAGTGGCTGCNTTAGCCGGGTG CAGGGGTTTAGGGGCTCGGACTGCTCNTTCCCCATCGCACAGATCCCCGCCTGGTTGCCTATTGACTCGAGGAACTGTAGTGTATCAATCTGTGTTGGATTTGATTGGGATGGATTCATTGGATTGTGGGCGCCT TTGAAAAAGAAGAGATTAA GCATTTGAAATATGGAGTAATAAGAAAGCCGCCTGCAGTTGAAATCGGTTCCTAAGTTGTATGTAAACATTGATTGTTGTTGCATACTGTCAATATACCTTGGCTTGTGTTAATAAGAGAGATTTGTGTGCTGTTGTTGCAAGGCCCAAAAAAAAAAAA]




>consensus_11957#0
TTTGAGTTCAAGCATGCCAAAATGCATCGCCTCCAAGGTATGGCATCTCTTGGATGTGCT
TTCTGCTTGGACTTGAATCTGCATTATTTGGTCCATGCTATCTTGCGACTTAAAGATCCA
TGGTTACACAACAGGGGATAAAGTTATCTAATGTAAATGCCCCCTCCTCTTTTCCTCTTT
TTATTTTTTGTGGGTTTGTGGGGGTGTTGGGGTTTAGTTTAACTAATTGCTGGGGTGTGT
GTATCTGCTATCTTTTGTAAGTTAGTGACAGGGTTTCCAGTTTTTTCTATTCACATTTAC
ATTTTCTTTTCAACTTTATATGTCCCTTATCTAGTTGTTTCTGCTTCTTTTATTGTTTTA
GTCAAATTTGAGAATAAGTGCAGATGGAATAGGATCCATCAGTGGCAGATTACTTTTAGG
CACTGCCGAAATTATACCCTCTGAAGAGCTCATAGATACAACTGGTGCGGGTGATGCATT
TATCGGAGCAGTTCTCTACGGTTTATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTT
TGCAGCTCAAGTGGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCA
TCGCACAGATCCCCGCCTGGTTGCCTATTGACTCGAGGAACTGTAGTGTATCCATCTGTG
TTGGATCTGATTGGGATGGATTCATTGGATTGTGGGCGCCTATTGAAAAATAAGAGATTA
ACGCATTTGAAATATGGAGTAATAAGAAAGCCGCCTNCAGTTGAAATCGGTTCCTAAGTT
GTATGTAAACCGTGATTGTTGTTGCATACTGTCAATATACCTTGGCTTGTGTTAATAAGA
GAGATTTGTGTGCTGTTGTTGCCAAAAAAAAAAAA

consensusID : consensus_11957#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [CGGTTTATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGGTAAGATAACTCTATAGTATTGCACTCGAGTACTGCAGTTAGTTGGGAATTTTCTGCTAAGCACAACCACTTATTACCACATACCACAGCAATACTATCATCTAAGCTGCTCTAGGGCACACACAGGAGGCTCACCTAAACGCACTGTTACTAGAACACAGCCCAGAAGTTGCTACTAAATGATTATGTTCCTTTTTCTTTGTATAACAGTATAAGTAAAAAAAATATAGAGGGGAAATTGCAGCCAGTAATTGCATTGGTATCGAGATTGCCGTTTATAGGTGGATGTGTGTACCTATAAAACTGAGAAGTGGGTAAACTGGCAAATGATTTATATAAAGTAAATTGCGTTCATGGTACACGAACTTATATGGTGGGTGCAAATAGGTACAACAACTTGCAAATTGTTTATTCCGGTACAATAACTTGGTTAGTTCGTGCAAACCTGGGCCAAACCAATCCACACAAGTAAAATTAATCTAATATGATACATATGTGTGTGTGTTTGCAGGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGT]

[+] EMBL AU098294             [CGGTTTATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGGTAAGATAACTCTATAGTATTGCACTCGAGTACTGCAGTTAGTTGGGAATTTTCTGCTAAGCACAACCACTTATTACCACATACCACAGCAATACTATCATCTAAGCTGCTCTAGGGCACACACAGGAGGCTCACCTAAACGCACTGTTACTAGAACACAGCCCAGAAGTTGCTACTAAATGATTATGTTCCTTTTTCTTTGTATAACAGTATAAGTAAAAAAAATATAGAGGGGAAATTGCAGCCAGTAATTGCATTGGTATCGAGATTGCCGTTTATAGGTGGATGTGTGTACCTATAAAACTGAGAAGTGGGTAAACTGGCAAATGATTTATATAAAGTAAATTGCGTTCATGGTACACGAACTTATATGGTGGGTGCAAATAGGTACAACAACTTGCAAATTGTTTATTCCGGTACAATAACTTGGTTAGTTCGTGCAAACCTGGGCCAAACCAATCCACACAAGTAAAATTAATCTAATATGATACATATGTGTGTGTGTTTGCAGGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGT]




>consensus_11957#1
CGGTTTATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGGTAAG
ATAACTCTATAGTATTGCACTCGAGTACTGCAGTTAGTTGGGAATTTTCTGCTAAGCACA
ACCACTTATTACCACATACCACAGCAATACTATCATCTAAGCTGCTCTAGGGCACACACA
GGAGGCTCACCTAAACGCACTGTTACTAGAACACAGCCCAGAAGTTGCTACTAAATGATT
ATGTTCCTTTTTCTTTGTATAACAGTATAAGTAAAAAAAATATAGAGGGGAAATTGCAGC
CAGTAATTGCATTGGTATCGAGATTGCCGTTTATAGGTGGATGTGTGTACCTATAAAACT
GAGAAGTGGGTAAACTGGCAAATGATTTATATAAAGTAAATTGCGTTCATGGTACACGAA
CTTATATGGTGGGTGCAAATAGGTACAACAACTTGCAAATTGTTTATTCCGGTACAATAA
CTTGGTTAGTTCGTGCAAACCTGGGCCAAACCAATCCACACAAGTAAAATTAATCTAATA
TGATACATATGTGTGTGTGTTTGCAGGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGA
CTGCTCTTCCCCATCGCACAGATCCCCGCCTGGT

consensusID : consensus_11957#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 633
fasta sequence

                              [AGAAGAAAGAAGTTTTGAGTTCAAGCATGCCAAAATGCATCGCCTCCAAGTCAAATTTGAGAATAAGTGCAGATGGAATAGGATCCATCAGTGGCAGATTACTTTTAGGCACTGCCG-AAATTATACCCTCTGAAGAGCTCATAGATACAACTGGTGCGGGTGATGCATTTATCGGAGCAGTTCTCTACGGTTTATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGTTGCCTATTGACTCGAGGAACTGTAGTGTATCAATCTGTGTTGGATTTGATTGGGATGGATTCATTGGATTGTGGGCGCCTTTGAAAAAGAAGAGATTAAGCATTTGAAATATGGAGTAATAAGAAAGCCGCCTGCAGTTGAAATCGGTTCCTAAGTTGTATGTAAACATTGATTGTTGTTGCATACTGTCAATATACCTTGGCTTGTGTTAATAAGAGAGATTTGTGTGCTGTTGTTGCAAGGCCCAAGGTACGAGTGATTGGTGGGTTCTTGTGATGTTAAAGAGCAACATTAAAAAAAAAAAAAAAACACTGTCCATGCCG]

[-] EMBL CF337537             [AGAAGAAAGAAGTTTTGAGTTCAAGCATGCCAAAATGCATCGCCTCCAAGTCAAATTTGAGAATAAGTGCAGATGGAATAGGATCCATCAGTGGCAGATTACTTTTAGGCACTGCCGNAAATTATACCCTCTGAAGAGCTCATAGATACAACTGGTGCGGGTGATGCATTTATCGGAGCAGTTCTCTACGGTTTATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGTTGCCTATTGACTCGAGGAACTGTAGTGTATCAATCTGTGTTGGATTTGATTGGGATGGATTCATTGGATTGTGGGCGCCTTTGAAAAAGAAGAGATTAAGCATTTGAAATATGGAGTAATAAGAAAGCCGCCTGCAGTTGAAATCGGTTCCTAAGTTGTATGTAAACATTGATTGTTGTTGCATACTGTCAATATACCTTGGCTTGTGTTAATAAGAGAGATTTGTGTGCTGTTGTTGCAAGGCCCAAGGTACGAGTGATTGGTGGGTTCTTGTGATGTTAAAGAGCAACATTAAAAAAAAAAAAAAAACACTGTCCATGCCG]
[+] EMBL AK104887             [            TTTTGAGTTCAAGCATGCCAAAATGCATCGCCTCCAAGTCAAATTTGAGAATAAGTGCAGATGGAATAGGATCCATCAGTGGCAGATTACTTTTAGGCACTGCCG AAATTATACCCTCTGAAGAGCTCATAGATACAACTGGTGCGGGTGATGCATTTATCGGAGCAGTTCTCTACGGTTTATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGTTGCCTATTGACTCGAGGAACTGTAGTGTATCAATCTGTGTTGGATTTGATTGGGATGGATTCATTGGATTGTGGGCGCCTTTGAAAAAGAAGAGATTAAGCATTTGAAATATGGAGTAATAAGAAAGCCGCCTGCAGTTGAAATCGGTTCCTAAGTTGTATGTAAACATTGATTGTTGTTGCATACTGTCAATATACCTTGGCTTGTGTTAATAAGAGAGATTTGTGTG                                                                                              ]
[-] EMBL CB668565             [             TTTGAGTTCAAGCATGCCAAAATGCATCGCCTCCAAGTCAAATTTGAGAATAAGTGCAGATGGAATAGGATCCATCAGTGGCAGATTACTTTTAGGCACTGCCG AAATTATACCCTCTGAAGAGCTCATAGATACAACTGGTGCGGGTGATGCATTTATCGGAGCAGTTCTCTACGGTTTATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGTTGCCTATTGACTCGAGGAACTGTAGTGTATCAATCTGTGTTGGATTTGATTGGGATGGATTCATTGGATTGTGGGCGCCTTTGAAAAAGAAGAGATTAAGCATTTGAAATATGGAGTAATAAGAAAGCCGCCTGCAGTTGAAATCGGTTCCTAAGTTGTATGTAAACATTGATTGTTGTTGCATACTGTCAATATACCTTGGCTTGTGTTAATAAGAGAGATTTGTGTGC                                                                                             ]




>consensus_11957#2
AGAAGAAAGAAGTTTTGAGTTCAAGCATGCCAAAATGCATCGCCTCCAAGTCAAATTTGA
GAATAAGTGCAGATGGAATAGGATCCATCAGTGGCAGATTACTTTTAGGCACTGCCGAAA
TTATACCCTCTGAAGAGCTCATAGATACAACTGGTGCGGGTGATGCATTTATCGGAGCAG
TTCTCTACGGTTTATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAG
TGGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCACAGATC
CCCGCCTGGTTGCCTATTGACTCGAGGAACTGTAGTGTATCAATCTGTGTTGGATTTGAT
TGGGATGGATTCATTGGATTGTGGGCGCCTTTGAAAAAGAAGAGATTAAGCATTTGAAAT
ATGGAGTAATAAGAAAGCCGCCTGCAGTTGAAATCGGTTCCTAAGTTGTATGTAAACATT
GATTGTTGTTGCATACTGTCAATATACCTTGGCTTGTGTTAATAAGAGAGATTTGTGTGC
TGTTGTTGCAAGGCCCAAGGTACGAGTGATTGGTGGGTTCTTGTGATGTTAAAGAGCAAC
ATTAAAAAAAAAAAAAAAACACTGTCCATGCCG

consensusID : consensus_11957#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [AGATACAGACCCCTGAGCGACCCAACAACGCGTACCGCTTCGGCATACAGCCGTATTTAGGGGCTCGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGTTGGCCTATTGACTCGAGGAACTGTAGTGTGANCAATCTGGTGTTGGATTTGATTGGGATGGATTCATTGGATTGTGGGCGCCTTTGAAAAAGAAGAGATTAAGCATTTGAAATATGGAGTAATAAGAAGCCGCCTGCAGTTGAAATCGGTTCCTAAGTTGTATGTAAACATTGATTGTTTTGCATACTGTCAATATACCTTGGCTTGTGTTAATAAGAGAGATTTGTGTGCTGTTGTTGCAAAAAAAA]

[+] EMBL BI805657             [AGATACAGACCCCTGAGCGACCCAACAACGCGTACCGCTTCGGCATACAGCCGTATTTAGGGGCTCGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGTTGGCCTATTGACTCGAGGAACTGTAGTGTGANCAATCTGGTGTTGGATTTGATTGGGATGGATTCATTGGATTGTGGGCGCCTTTGAAAAAGAAGAGATTAAGCATTTGAAATATGGAGTAATAAGAAGCCGCCTGCAGTTGAAATCGGTTCCTAAGTTGTATGTAAACATTGATTGTTTTGCATACTGTCAATATACCTTGGCTTGTGTTAATAAGAGAGATTTGTGTGCTGTTGTTGCAAAAAAAA]




>consensus_11957#3
AGATACAGACCCCTGAGCGACCCAACAACGCGTACCGCTTCGGCATACAGCCGTATTTAG
GGGCTCGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGTTGGCCTATTGACTCGAG
GAACTGTAGTGTGANCAATCTGGTGTTGGATTTGATTGGGATGGATTCATTGGATTGTGG
GCGCCTTTGAAAAAGAAGAGATTAAGCATTTGAAATATGGAGTAATAAGAAGCCGCCTGC
AGTTGAAATCGGTTCCTAAGTTGTATGTAAACATTGATTGTTTTGCATACTGTCAATATA
CCTTGGCTTGTGTTAATAAGAGAGATTTGTGTGCTGTTGTTGCAAAAAAAA

consensusID : consensus_11957#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [CTTCCCCATCGCACAGATCCCCCCCTGGTTCCCTATTGACTCGAGGAACTGTAGTGTATCCATCTGTGCTTGGATCTGATTGGGATGGATTCCTTGGATTGTGGGCNCCTTTGAAAAATAAGAGATTAAGCCTTTGAAATATGGAGTAATAAGAAACCCCCTCCGTTGAAATCGGTTCCTAAGTTGTATGTAACCGTGATTGTTGTTCCACTACTGCCCATATA]

[-] EMBL BM422179             [CTTCCCCATCGCACAGATCCCCCCCTGGTTCCCTATTGACTCGAGGAACTGTAGTGTATCCATCTGTGCTTGGATCTGATTGGGATGGATTCCTTGGATTGTGGGCNCCTTTGAAAAATAAGAGATTAAGCCTTTGAAATATGGAGTAATAAGAAACCCCCTCCGTTGAAATCGGTTCCTAAGTTGTATGTAACCGTGATTGTTGTTCCACTACTGCCCATATA]




>consensus_11957#4
CTTCCCCATCGCACAGATCCCCCCCTGGTTCCCTATTGACTCGAGGAACTGTAGTGTATC
CATCTGTGCTTGGATCTGATTGGGATGGATTCCTTGGATTGTGGGCNCCTTTGAAAAATA
AGAGATTAAGCCTTTGAAATATGGAGTAATAAGAAACCCCCTCCGTTGAAATCGGTTCCT
AAGTTGTATGTAACCGTGATTGTTGTTCCACTACTGCCCATATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11957#0      TTTGAGTTCAAGCATGCCAAAATGCATCGCCTCCAAGGTATGGCATCTCTTGGATGTGCT 60
consensus_11957#4      ------------------------------------------------------------
consensus_11957#2      ------------------------------------------------------------
consensus_11957#3      ------------------------------------------------------------
consensus_11957#1      ------------------------------------------------------------
                                                                                   

consensus_11957#0      TTCTGCTTGGACTTGAATCTGCATTATTTGGTCCATGCTATCTTGCGACTTAAAGATCCA 120
consensus_11957#4      ------------------------------------------------------------
consensus_11957#2      ------------------------------------------------------------
consensus_11957#3      ------------------------------------------------------------
consensus_11957#1      ------------------------------------------------------------
                                                                                   

consensus_11957#0      TGGTTACACAACAGGGGATAAAGTTATCTAATGTAAATGCCCCCTCCTCTTTTCCTCTTT 180
consensus_11957#4      ------------------------------------------------------------
consensus_11957#2      ------------------------------------------------------------
consensus_11957#3      ------------------------------------------------------------
consensus_11957#1      ------------------------------------------------------------
                                                                                   

consensus_11957#0      TTATTTTTTGTGGGTTTGTGGGGGTGTTGGGGTTTAGTTTAACTAATTGCTGGGGTGTGT 240
consensus_11957#4      ------------------------------------------------------------
consensus_11957#2      ------------------------------------------------------------
consensus_11957#3      ------------------------------------------------------------
consensus_11957#1      ------------------------------------------------------------
                                                                                   

consensus_11957#0      GTATCTGCTATCTTTTGTAAGTTAGTGACAGGGTTTCCAGTTTTTTCTATTCACATTTAC 300
consensus_11957#4      ------------------------------------------------------------
consensus_11957#2      ------------------------------------------------------------
consensus_11957#3      ------------------------------------------------------------
consensus_11957#1      ----------------------------------------------CGGTTTATGCTCTG 14
                                                                                   

consensus_11957#0      ATTTTCTTTTCAACTTTATATGTCCCTTATCTAGTTGTTTCTGCTTCTTTTATTGTTTTA 360
consensus_11957#4      ------------------------------------------------------------
consensus_11957#2      ----------AGAAGAAAGAAGTTTTGAGTTCAAGCATGCCAAAATGCATCGCC-TCCAA 49
consensus_11957#3      ------------------------------------------------------------
consensus_11957#1      GCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGGTAAGATAACTCTATAGTA 74
                                                                                   

consensus_11957#0      GTCAAATTTGAGAATAAGTGCAGATGGAATAGGATCCATCAGTGGCAGATTACTTTTAGG 420
consensus_11957#4      ------------------------------------------------------------
consensus_11957#2      GTCAAATTTGAGAATAAGTGCAGATGGAATAGGATCCATCAGTGGCAGATTACTTTTAGG 109
consensus_11957#3      ------------------------------------------------------------
consensus_11957#1      -TTGCACTCGAGTACTGCAGTTAGTTGGGAATTTTCTGCTAAGCACAACCACTTATTACC 133
                                                                                   

consensus_11957#0      CACTGCCGAAATTATACCCTCTGAAGAGCTCATAGATACAACTGGTGCGGGTGATGCATT 480
consensus_11957#4      ------------------------------------------------------------
consensus_11957#2      CACTGCCGAAATTATACCCTCTGAAGAGCTCATAGATACAACTGGTGCGGGTGATGCATT 169
consensus_11957#3      ------------------------------------------------------------
consensus_11957#1      ACATACCACAGCAATACTATCATCTAAGCTGCT--CTAGGGCACACACAGGAGGCTCACC 191
                                                                                   

consensus_11957#0      TATCGGAGCAGTTCTCTACGGTTTATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTT 540
consensus_11957#4      ------------------------------------------------------------
consensus_11957#2      TATCGGAGCAGTTCTCTACGGTTTATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTT 229
consensus_11957#3      ----------------------------------------AGATACAGACCCCTGAGCGA 20
consensus_11957#1      TAAACGCACTGTTACT---AGAACACAGCCCAGAAGTTGCTACTAAATGATTATGTTCCT 248
                                                                                   

consensus_11957#0      TGCAGCTCAAGTGGCTGCTTGCGGGTGCAG--GGGTTTAGGGGCTCGGACTGCTCTTCCC 598
consensus_11957#4      ------------------------------------------------------CTTCCC 6
consensus_11957#2      TGCAGCTCAAGTGGCTGCTTGCGGGTGCAG--GGGTTTAGGGGCTCGGACTGCTCTTCCC 287
consensus_11957#3      CCCAACAACGCGTACCGCTTCGGCATACAGCCGTATTTAGGGGCTCGGACTGCTCTTCCC 80
consensus_11957#1      TTTTCTTTGTATAACAGTATAAGTAAAAAA---AATATAGAGGGG-AAATTGCAGCCAGT 304
                                                                                   

consensus_11957#0      CATCGCACAGATCCCCGCCTGGTTG-CCTATTGACTCGAGGAACTGTAGTGT-ATCCATC 656
consensus_11957#4      CATCGCACAGATCCCCCCCTGGTTC-CCTATTGACTCGAGGAACTGTAGTGT-ATCCATC 64
consensus_11957#2      CATCGCACAGATCCCCGCCTGGTTG-CCTATTGACTCGAGGAACTGTAGTGT-ATCAATC 345
consensus_11957#3      CATCGCACAGATCCCCGCCTGGTTGGCCTATTGACTCGAGGAACTGTAGTGTGANCAATC 140
consensus_11957#1      AATTGCATTGGTATCGA---GATTG--CCGTTTATAGGTGGATGTGTGTACCTATAAAAC 359
                        ** ***  * *  *     * **   *  ** *   * ***  ***      *   * *

consensus_11957#0      TGTG-TTGGATCTGATTGGGATGGATTCATTGGATTGTGGGCGCCTATTGAAAAATAAGA 715
consensus_11957#4      TGTGCTTGGATCTGATTGGGATGGATTCCTTGGATTGTGGGCNCCT-TTGAAAAATAAGA 123
consensus_11957#2      TGTG-TTGGATTTGATTGGGATGGATTCATTGGATTGTGGGCGCCT-TTGAAAAAGAAGA 403
consensus_11957#3      TGGTGTTGGATTTGATTGGGATGGATTCATTGGATTGTGGGCGCCT-TTGAAAAAGAAGA 199
consensus_11957#1      TGAGAAGTGGGTAAACTGGCAAATGATTTATATAAAGTAAATTGCGTTCATGGTACACGA 419
                       **      *     * *** *     *   *  *  **      *  *      * * **

consensus_11957#0      GATTAACGCATTTGAAATATGGAGTAATAAGAAAGCCGCCTNCAGTTGAAATCGGTTCCT 775
consensus_11957#4      GATTAA-GCCTTTGAAATATGGAGTAATAAGAAACCC--CCTCCGTTGAAATCGGTTCCT 180
consensus_11957#2      GATTAA-GCATTTGAAATATGGAGTAATAAGAAAGCCGCCTGCAGTTGAAATCGGTTCCT 462
consensus_11957#3      GATTAA-GCATTTGAAATATGGAGTAATAAGAA-GCCGCCTGCAGTTGAAATCGGTTCCT 257
consensus_11957#1      ACTTAT-ATGGTGGGTGCAAATAGGTACAACAA-CTTGCAAATTGTTTATTCCGGTACAA 477
                         ***      * *    *   **  * ** **           *** *   **** *  

consensus_11957#0      AAGTTGTATGTAAACCGTGATTGTTGTTGCA-TACTGTCAATATACCTTGGCTTGTGTTA 834
consensus_11957#4      AAGTTGTATGTAA-CCGTGATTGTTGTTCCACTACTGCCCATATA--------------- 224
consensus_11957#2      AAGTTGTATGTAAACATTGATTGTTGTTGCA-TACTGTCAATATACCTTGGCTTGTGTTA 521
consensus_11957#3      AAGTTGTATGTAAACATTGATTGTT-TTGCA-TACTGTCAATATACCTTGGCTTGTGTTA 315
consensus_11957#1      TAACTTGGTTAGTTCGTGCAAACCTGGGCCAAACCAATCCACACAAGTAAAATTAATCTA 537
                        *  *   *     *    *    *    **   *   * * * *               

consensus_11957#0      ATAAGAGAGATTTGTGTGCTGTTGTTGCCAAAAAAAAAAAA------------------- 875
consensus_11957#4      ------------------------------------------------------------
consensus_11957#2      ATAAGAGAGATTTGTGTGCTGTTGTTGCAAGGCCCAAGGTACGAGTGATTGGTGGGTTCT 581
consensus_11957#3      ATAAGAGAGATTTGTGTGCTGTTGTTGCAAAAAAAA------------------------ 351
consensus_11957#1      ATATGATACATATGTGTG-TGTGTTTGCAGGCTGCTTGCGGGTGCAGGGGTTTAGGGGCT 596
                                                                                   

consensus_11957#0      ----------------------------------------------------
consensus_11957#4      ----------------------------------------------------
consensus_11957#2      TGTGATGTTAAAGAGCAACATTAAAAAAAAAAAAAAAACACTGTCCATGCCG 633
consensus_11957#3      ----------------------------------------------------
consensus_11957#1      CGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGT-------------- 634