cluster # 11959

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Oryza sativa
cluster # 11959 cluster # 11959 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11959#0 length = 2519 sequences # 1

consensus_11959#1 length = 890 sequences # 7
consensus_11959#2 length = 237 sequences # 1

consensusID : consensus_11959#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2519
fasta sequence

                              [CGCGAAATCTGCCGTTGCGGGAGGAGGAGAGGTGTCCACGGAGACTCCGCGCAGGAGCGCGCGACTGCAGCAAGCAGCCAAGAAGAAGCGGTCCCGCGATGCTTCGCTCCCTCCCGCTCCCGCTCCCGCTCGACATCGGCAGGCCGGGAAGGTTCTCTGCGCGCCGGAGTAAGCTTCTTGTTGCCTCGTTTCCCTCCTCCTCTGCCCCCCTACAATTTTCCGCCTCTGCTCTTGCTCTTGCAAGATCGATTCAATTTTCATCTTATGCCGAGCGGCTAGGCTAGGGTTTACTTTCCCCGCCCCCACTACTTCCAAATTTATTTCATGAGTAAATTTTACAAAATTACATCTACTTTGACTAAATTATCACAAAACTACAGATTTATTAAGACCAAGTATCACAAAACTACAGTTTTAGTACTAGAGTTATCACAAAACTACAAATTTTACAGTGCCTGCCACTACTATTATTTTAAGAGTTATAAATGTTGTTAAATATGTAGTTTGGTGATCTTCTATCTTAAATCCGTAGTTCTTTGATAAATTTGGTTCTAAATATGTAGTGTTATGATACACCGCCTTAAATTTGTAGTTTTGTGATAGTTTGGTGAAAGTAATTGTAGTTTTCTGAATTTACTCTTATTTCATTATCCACCCCACAAAACGAGGTCGGAAATTTTACGCCATTACTCCACTAGATAGAATAGGCCTCACAACCTCCACTGCCCTTCAAAAAACGTTGTGAGTTTTATATGGGTAAACAGGAAATTTAAAACATACGGCCTGTCTGCATCTTCATGTACAATTTTTTGTTATTCTCTTTGGGTTTTGAACCAAACCAGCTTGTACAAAAACTTGGGGTGTTTCATCAATGGCAAAAGGGAACATGTAAACGTTATAGAGAATTTCTCATCACTGTATCACTCATACCACAGTATGTTCTACCTGACTCCCACTAGGGGTATATAATGGTGATAATGCCTTCCGGTTGCTACCTTCATTCTTCCTACTAAGATAGGGTTTACTACTTTCTAAGAAAAAGAACGATCTTCATAGGCTGAGTTTGCAAATAATGCACACCCAACTAGGATGTTGCCTATATTTCTAGCATTAGCTGCCTTCCGTTGAAATAAGATGGGCGTAGCTCAGAAATGAATGCTATTGTGCAGGATATCTGTTAAAAAAACAGTGGAAGGTACTATAAACGATGCTGAAATAGAGTCCATTGTTTTAAAACTATGGAATTTCACAGAAGAAGAGAGGGTTCCATACTATAACCGGTTGAACAAGAAAAGAGCTAACATGGCCTTGGCTTGGTACAATGAAAACAACCCGGAAGATTGCTATGAATTTACGAGTGTGCTCTTGCATGATGTATGCAATTTTTGTGATGGAGGTGTTTGCCATGTGCACATCAATTTTAAGGCAAGGAATGTGACAACAAATTCAGAGGAGCTCTTCTTCGCTGAATTGGCTTTAATCAACAATGTTTTCGATCAATATAGTGGATATACGACCACTGCCTGCTGTATTATTGATGGCAACTGTCTTGGTATGCTCCTCTCTTATATATATTTATACACACAAACACATGTGTTTCTCTTCTTTCATGATTGGTTGAGCAGAAATCATAAAAGGCGCATTGTTTCTTTTACTAGTTTCCCTTGTGCGTGTATATGTGAAAAAGTAAACCTGTGTTTGCACATCTTTTATTGTTGATTTAGGCAAATTATGATGGTTCCATATTCACTCAGCACATGGTGAAGTTACACTCTTCAATGAAATGTATAATCCCATAAATGTGTTTGGAATTTTTAAGGAAACTCTTCAAATGTTATGTGCAAAGTGTTTTCCTCTGTCACATGAAAATGTTACTAGTTGATTCACTATGTTCTAGAAAATTATTTATACTTAATGTTCAAATGTGTGTTTTGGAGGCTATGTCAATGTTCTGACAATAAGTAGAAGAGATTGGTGGGGTAGTTAGGTTAACATGAAACAATGGACAAAAGCAGGAGTAGAATAGCAGATTGGGTCCCAACATTCATGCACATAGGTGGTGTCACCGATGTACCAGTAAAGGTAGCATATGTACTTTACTGTTTTCTCTCTCAGGATGGCAATATCACTGGTAACAAGTTTTTGTGGAGTGCTCAATATGAATGGTTGTGCTTGCTTTCTATTAGTTGTCTTGTTGAATACTGGTGTATAAACATTTTGTAGTTTACCTTTGAGATGCTTATAAAGTTTGTATCGTAGGTGGTTTGAGGAATGTGCTGCTCAATGGATGTTTTTTGCGAGAGGAGCGTTATGATGAAAAAAATTGCTACGCATGTGATGAAAAGATTAAGCACCCCACAGGAAGTACCTACAAAGGAGGTCATTATGCCGAAGACTATTTAGTACAGGGAATCTTATGAATCACAGATATTTATGTTTTCATGTAATCTATTAGTACATCATTTTGATGGTTTGGGAGCTGTATGAACTAGTAAAGCATCCTACCACTATACATGCTC]

[+] EMBL AK067241             [CGCGAAATCTGCCGTTGCGGGAGGAGGAGAGGTGTCCACGGAGACTCCGCGCAGGAGCGCGCGACTGCAGCAAGCAGCCAAGAAGAAGCGGTCCCGCGATGCTTCGCTCCCTCCCGCTCCCGCTCCCGCTCGACATCGGCAGGCCGGGAAGGTTCTCTGCGCGCCGGAGTAAGCTTCTTGTTGCCTCGTTTCCCTCCTCCTCTGCCCCCCTACAATTTTCCGCCTCTGCTCTTGCTCTTGCAAGATCGATTCAATTTTCATCTTATGCCGAGCGGCTAGGCTAGGGTTTACTTTCCCCGCCCCCACTACTTCCAAATTTATTTCATGAGTAAATTTTACAAAATTACATCTACTTTGACTAAATTATCACAAAACTACAGATTTATTAAGACCAAGTATCACAAAACTACAGTTTTAGTACTAGAGTTATCACAAAACTACAAATTTTACAGTGCCTGCCACTACTATTATTTTAAGAGTTATAAATGTTGTTAAATATGTAGTTTGGTGATCTTCTATCTTAAATCCGTAGTTCTTTGATAAATTTGGTTCTAAATATGTAGTGTTATGATACACCGCCTTAAATTTGTAGTTTTGTGATAGTTTGGTGAAAGTAATTGTAGTTTTCTGAATTTACTCTTATTTCATTATCCACCCCACAAAACGAGGTCGGAAATTTTACGCCATTACTCCACTAGATAGAATAGGCCTCACAACCTCCACTGCCCTTCAAAAAACGTTGTGAGTTTTATATGGGTAAACAGGAAATTTAAAACATACGGCCTGTCTGCATCTTCATGTACAATTTTTTGTTATTCTCTTTGGGTTTTGAACCAAACCAGCTTGTACAAAAACTTGGGGTGTTTCATCAATGGCAAAAGGGAACATGTAAACGTTATAGAGAATTTCTCATCACTGTATCACTCATACCACAGTATGTTCTACCTGACTCCCACTAGGGGTATATAATGGTGATAATGCCTTCCGGTTGCTACCTTCATTCTTCCTACTAAGATAGGGTTTACTACTTTCTAAGAAAAAGAACGATCTTCATAGGCTGAGTTTGCAAATAATGCACACCCAACTAGGATGTTGCCTATATTTCTAGCATTAGCTGCCTTCCGTTGAAATAAGATGGGCGTAGCTCAGAAATGAATGCTATTGTGCAGGATATCTGTTAAAAAAACAGTGGAAGGTACTATAAACGATGCTGAAATAGAGTCCATTGTTTTAAAACTATGGAATTTCACAGAAGAAGAGAGGGTTCCATACTATAACCGGTTGAACAAGAAAAGAGCTAACATGGCCTTGGCTTGGTACAATGAAAACAACCCGGAAGATTGCTATGAATTTACGAGTGTGCTCTTGCATGATGTATGCAATTTTTGTGATGGAGGTGTTTGCCATGTGCACATCAATTTTAAGGCAAGGAATGTGACAACAAATTCAGAGGAGCTCTTCTTCGCTGAATTGGCTTTAATCAACAATGTTTTCGATCAATATAGTGGATATACGACCACTGCCTGCTGTATTATTGATGGCAACTGTCTTGGTATGCTCCTCTCTTATATATATTTATACACACAAACACATGTGTTTCTCTTCTTTCATGATTGGTTGAGCAGAAATCATAAAAGGCGCATTGTTTCTTTTACTAGTTTCCCTTGTGCGTGTATATGTGAAAAAGTAAACCTGTGTTTGCACATCTTTTATTGTTGATTTAGGCAAATTATGATGGTTCCATATTCACTCAGCACATGGTGAAGTTACACTCTTCAATGAAATGTATAATCCCATAAATGTGTTTGGAATTTTTAAGGAAACTCTTCAAATGTTATGTGCAAAGTGTTTTCCTCTGTCACATGAAAATGTTACTAGTTGATTCACTATGTTCTAGAAAATTATTTATACTTAATGTTCAAATGTGTGTTTTGGAGGCTATGTCAATGTTCTGACAATAAGTAGAAGAGATTGGTGGGGTAGTTAGGTTAACATGAAACAATGGACAAAAGCAGGAGTAGAATAGCAGATTGGGTCCCAACATTCATGCACATAGGTGGTGTCACCGATGTACCAGTAAAGGTAGCATATGTACTTTACTGTTTTCTCTCTCAGGATGGCAATATCACTGGTAACAAGTTTTTGTGGAGTGCTCAATATGAATGGTTGTGCTTGCTTTCTATTAGTTGTCTTGTTGAATACTGGTGTATAAACATTTTGTAGTTTACCTTTGAGATGCTTATAAAGTTTGTATCGTAGGTGGTTTGAGGAATGTGCTGCTCAATGGATGTTTTTTGCGAGAGGAGCGTTATGATGAAAAAAATTGCTACGCATGTGATGAAAAGATTAAGCACCCCACAGGAAGTACCTACAAAGGAGGTCATTATGCCGAAGACTATTTAGTACAGGGAATCTTATGAATCACAGATATTTATGTTTTCATGTAATCTATTAGTACATCATTTTGATGGTTTGGGAGCTGTATGAACTAGTAAAGCATCCTACCACTATACATGCTC]




>consensus_11959#0
CGCGAAATCTGCCGTTGCGGGAGGAGGAGAGGTGTCCACGGAGACTCCGCGCAGGAGCGC
GCGACTGCAGCAAGCAGCCAAGAAGAAGCGGTCCCGCGATGCTTCGCTCCCTCCCGCTCC
CGCTCCCGCTCGACATCGGCAGGCCGGGAAGGTTCTCTGCGCGCCGGAGTAAGCTTCTTG
TTGCCTCGTTTCCCTCCTCCTCTGCCCCCCTACAATTTTCCGCCTCTGCTCTTGCTCTTG
CAAGATCGATTCAATTTTCATCTTATGCCGAGCGGCTAGGCTAGGGTTTACTTTCCCCGC
CCCCACTACTTCCAAATTTATTTCATGAGTAAATTTTACAAAATTACATCTACTTTGACT
AAATTATCACAAAACTACAGATTTATTAAGACCAAGTATCACAAAACTACAGTTTTAGTA
CTAGAGTTATCACAAAACTACAAATTTTACAGTGCCTGCCACTACTATTATTTTAAGAGT
TATAAATGTTGTTAAATATGTAGTTTGGTGATCTTCTATCTTAAATCCGTAGTTCTTTGA
TAAATTTGGTTCTAAATATGTAGTGTTATGATACACCGCCTTAAATTTGTAGTTTTGTGA
TAGTTTGGTGAAAGTAATTGTAGTTTTCTGAATTTACTCTTATTTCATTATCCACCCCAC
AAAACGAGGTCGGAAATTTTACGCCATTACTCCACTAGATAGAATAGGCCTCACAACCTC
CACTGCCCTTCAAAAAACGTTGTGAGTTTTATATGGGTAAACAGGAAATTTAAAACATAC
GGCCTGTCTGCATCTTCATGTACAATTTTTTGTTATTCTCTTTGGGTTTTGAACCAAACC
AGCTTGTACAAAAACTTGGGGTGTTTCATCAATGGCAAAAGGGAACATGTAAACGTTATA
GAGAATTTCTCATCACTGTATCACTCATACCACAGTATGTTCTACCTGACTCCCACTAGG
GGTATATAATGGTGATAATGCCTTCCGGTTGCTACCTTCATTCTTCCTACTAAGATAGGG
TTTACTACTTTCTAAGAAAAAGAACGATCTTCATAGGCTGAGTTTGCAAATAATGCACAC
CCAACTAGGATGTTGCCTATATTTCTAGCATTAGCTGCCTTCCGTTGAAATAAGATGGGC
GTAGCTCAGAAATGAATGCTATTGTGCAGGATATCTGTTAAAAAAACAGTGGAAGGTACT
ATAAACGATGCTGAAATAGAGTCCATTGTTTTAAAACTATGGAATTTCACAGAAGAAGAG
AGGGTTCCATACTATAACCGGTTGAACAAGAAAAGAGCTAACATGGCCTTGGCTTGGTAC
AATGAAAACAACCCGGAAGATTGCTATGAATTTACGAGTGTGCTCTTGCATGATGTATGC
AATTTTTGTGATGGAGGTGTTTGCCATGTGCACATCAATTTTAAGGCAAGGAATGTGACA
ACAAATTCAGAGGAGCTCTTCTTCGCTGAATTGGCTTTAATCAACAATGTTTTCGATCAA
TATAGTGGATATACGACCACTGCCTGCTGTATTATTGATGGCAACTGTCTTGGTATGCTC
CTCTCTTATATATATTTATACACACAAACACATGTGTTTCTCTTCTTTCATGATTGGTTG
AGCAGAAATCATAAAAGGCGCATTGTTTCTTTTACTAGTTTCCCTTGTGCGTGTATATGT
GAAAAAGTAAACCTGTGTTTGCACATCTTTTATTGTTGATTTAGGCAAATTATGATGGTT
CCATATTCACTCAGCACATGGTGAAGTTACACTCTTCAATGAAATGTATAATCCCATAAA
TGTGTTTGGAATTTTTAAGGAAACTCTTCAAATGTTATGTGCAAAGTGTTTTCCTCTGTC
ACATGAAAATGTTACTAGTTGATTCACTATGTTCTAGAAAATTATTTATACTTAATGTTC
AAATGTGTGTTTTGGAGGCTATGTCAATGTTCTGACAATAAGTAGAAGAGATTGGTGGGG
TAGTTAGGTTAACATGAAACAATGGACAAAAGCAGGAGTAGAATAGCAGATTGGGTCCCA
ACATTCATGCACATAGGTGGTGTCACCGATGTACCAGTAAAGGTAGCATATGTACTTTAC
TGTTTTCTCTCTCAGGATGGCAATATCACTGGTAACAAGTTTTTGTGGAGTGCTCAATAT
GAATGGTTGTGCTTGCTTTCTATTAGTTGTCTTGTTGAATACTGGTGTATAAACATTTTG
TAGTTTACCTTTGAGATGCTTATAAAGTTTGTATCGTAGGTGGTTTGAGGAATGTGCTGC
TCAATGGATGTTTTTTGCGAGAGGAGCGTTATGATGAAAAAAATTGCTACGCATGTGATG
AAAAGATTAAGCACCCCACAGGAAGTACCTACAAAGGAGGTCATTATGCCGAAGACTATT
TAGTACAGGGAATCTTATGAATCACAGATATTTATGTTTTCATGTAATCTATTAGTACAT
CATTTTGATGGTTTGGGAGCTGTATGAACTAGTAAAGCATCCTACCACTATACATGCTC

consensusID : consensus_11959#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 890
fasta sequence

                              [NCGACGCCGACGCCGACGTCGGTCGCCGCGAAATCTGCCGTTGCGGGAGGAGGAGAGGTGTCCACGGAGACTCCGCGCAGGAGCGCGCGAC-TGCAGCAAGCAGCCAAGAAGAAGCGGTCCCGCGATGCTTCGCTCCCTCCCGCTCCCGCTCCCGCTCGACATCGGCAGGCCGGGAAGGTTCTCTGCGCGCCGGAGATATCTGTTAAAAAAACAGTGGAAGGTACTATAAACGATGCTGAAATAGAGTCCATTGTTTTAAAACTATGGAATTTCACAGAAGAAGAGAGGGTTCCATACTATAACCGGTTGAACAAGAAAAGAGCTAACATGGCCTTGGCTTGGTACAATGAAAACAACCCGGAA-GATTGCTATGAA-TTTACGAGTGTGCTCTTGCATGATGTATGCAATTTTTGTGATGGAGGTGTTTGCCATGTGCACATTAATTTTAAGGCAAGGAATGTGACAACAAATTCAGAGGAGCTCTTCTTCGCTGAATTGGCTTTAATCAACAATGTTTTCGATCAATATAGTGGATATACGACCACTGCCTGCTGTATTATTGATGGCAACTGTCTTGGTGGTTTGAGGAATGTGCTGCTCAATGGATG-TTTTTTGCGAGAGGAGCGTTATGATGAAAAAAATTGCTACGCATGTGATGAAAAGATTAAGCACCCCACAGGAAGTACCTACAAAGGAGGTCATTATGCCGAAGACTATTTAGTACAGGGAATCTTATGAATCACAGATATTTATGTTTTCATGTAATCTATTAGTACATCATTTTGATGGTTTGGGAGCTGTATGAACTAGTAAAGCATCCTACCACTATACATGCTCTGAAAATTATGCAAGGCCCCTCGTATATGCTACTTGTGGACCCAAAAAAAAAA]

[+] EMBL C28785               [NCGACGCCGACGCCGACGTCGGTCGCGGCGAAATCTGCCGTTGCGGGAGGAGGAGAGGTGTCCACGGAGACTCCGCGCAGGAGC CG NACNTGCAGCAAGCAGCCAAGAAGAAGCGGTCCC CACTGCTTCG TCCCTCCCGCTCCCNCTCCCGCTCGACATCGGCAGGCCGGGAAGGTTCTCTGCGCGCCGGAGATATCTGTTAAAAAAACAGTGGAAGGTACTATAAACGATGCTGAAATAGAGTCCATTGTTTTAAAACTATGGAATTTCACAGAAGAAGAGAGGGTTCCATACTATAACCGGTTGAACAAGAGAAGAGCTAACATGGCC TNGNTTGGTACAATGAAANCAA CCGGAAGGATTGCTATGAATTTTACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BP185037             [                          CGCGAAATCTGCCGTTGCGGGAGGAGGAGAGGTGTCCACGGAGACTCCGCGCAGGAGCGCGCGAC TGCAGCAAGCAGCCAAGAAGAAGCGGTCCCGCGATGCTTCGCTCCCTCCCGCTCCCGCTCCCGCTCGACATCGGCAGGCCGGGAAGGTTCTCTGCGCGCCGGAGATATCTGTTAAAAAAACAGTGGAAGGTACTATAAACGATGCTGAAATAGAGTCCATTGTTTTAAAACTATGGAATTTCACAGAAGAAGAGAGGGTTCCATACTATAACCGGTTGAACAAGAAAAGAGCTAACATGGCCTTGGCTTGGTACAATGAAAACAACCCGGAA GATTGCTATGAA TTTACGAGTGTGCTCTTGCATGATGTATGCAATTTTTGTGATGGAGGTGTTTGCCATGTGCACATTAATTTTAAGGCAAGGAATGTGACAACAAATTCAGAGGAGCTCTTCTTCGCTGAATTGGCTTTAATCAACAATGTTTTCGATCAATATAGTGGATATACGACCACTGCCTGCTGTATTATTGATGGCAACTGTCTTGGTGGTTTGAGGAATGTGCTGCTCAATGGATG TTTTTTGCGAGAGGAGCGTTATGATGAAAAAAATTGCTACGCATGTGATGAAAAGATTAAGCACCCCACAGGAAGTACCTACAAAGGAGGTCATTATGCCGAAGACTATTTAGTACAGGGAATCTTATGAATCACAGATATTTATGTTTTCATGTAATCTATTAGTACATCATTTTGATGGTTTGGGAGCTGTATGAACTAGTAAAGCATCCTACCACTATACATGCTCTGAAAATTATGCAAGGCCCCTCGTATATGCTACTTGTGGACCCAAAAAAAAA ]
[+] EMBL CB681736             [                          CGCGAAATCTGCCGTTGCGGGAGGAGGAGAGGTGTCCACGGAGACTCCGCGCAGGAGCGCGCGAC TGCAGCAAGCAGCCAAGAAGAAGCGGTCCCGCGATGCTTCGCTCCCTCCCGCTCCCGCTCCCGCTCGACATCGGCAGGCCGGGAAGGTTCTCTGCGCGCCGGAGATATCTGTTAAAAAAACAGTGGAAGGTACTATAAACGATGCTGAAATAGAGTCCATTGTTTTAAAACTATGGAATTTCACAGAAGAAGAGAGGGTTCCATACTATAACCGGTTGAACAAGAAAAGAGCTAACATGGCCTTGGCTTGGTACAATGAAAACAACCCGGAA GATTGCTATGAA TTTACGAGTGTGCTCTTGCATGATGTATGCAATTTTTGTGATGGAGGTGTTTGCCATGTGCACATTAATTTTAAGGCAAGGAATGTGACAACAAATTCAGAGGAGCTCTTCTTCGCTGAATTGGCTTTAATCAACAATGTTTTCGATCAATATAGTGGATATACGACCACTGCCTGCTGTATTATTGATGGCAACTGTCTTGGTGGTTTGAGGAATGTGCTGCTCAATGGATG TTTTTTGCGAGAGGAGCGTTATGATGAAAAAAATTGCTACGCATGTGATGAAAAGATTAAGCACCCCACAGGAAGTACCTACAAAGGAGGTCATTATGCCGAAGACTATTTAGTACAGGGAATCTTATGAATCACAGATATTT                                                                                                                                           ]
[+] EMBL CF327294             [                          CGCGAAATCTGCCGTTGCGGGAGGAGGAGAGGTGTCCACGGAGACTCCGCGCAGGAGCGCGCGAC TGCAGCAAGCAGCCAAGAAGAAGCGGTCCCGCGATGCTTCGCTCCCTCCCGCTCCCGCTCCCGCTCGACATCGGCAGGCCGGGAAGGTTCTCTGCGCGCCGGAGATATCTGTTAAAAAAACAGTGGAAGGTACTATAAACGATGCTGAAATAGAGTCCATTGTTTTAAAACTATGGAATTTCACAGAAGAAGAGAGGGTTCCATACTATAACCGGTTGAACAAGAAAAGAGCTAACATGGCCTTGGCTTGGTACAATGAAAACAACCCGGAA GATTGCTATGAA TTTACGAGTGTGCTCTTGCATGATGTATGCAATTTTTGTGATGGAGGTGTTTGCCATGTGCACATTAATTTTAAGGCAAGGAATGTGACAACAAATTCAGAGGAGCTCTTCTTCG                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF310025             [                          CGCGAAATCTGCCGTTGCGGGAGGAGGAGAGGTGTCCACGGAGACTCCGCGCAGGAGCGCGCGAC TGCAGCAAGCAGCCAAGAAGAAGCGGTCCCGCGATGCTTCGCTCCCTCCCGCTCCCGCTCCCGCTCGACATCGGCAGGCCGGGAAGGTTCTCTGCGCGCCGGAGATATCTGTTAAAAAAACAGTGGAAGGTACTATAAACGATGCTGAAATAGAGTCCATTGTTTTAAAACTATGGAATTTCACAGAAGAAGAGAGGGTTCCATACTATAACCGGTTGAACAAGAAAAGAGCTAACATGGCCTTGGCTTGGTACAATGAAAACAACCCGGAA GATTGCTATGAA TTTACGAGTGTGCTCTTGCATGATGTATGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB681737             [                                                                                                                                                           CTTGACATCGGCAGGCCGGGAAGGTTCTCTGCGCGCCGGAGATATCTGTTAAAAAAACAGTGGAAGGTACTATAAACGATGCTGAAATAGAGTCCATTGTTTTAAAACTATGGAATTTCACAGAAGAAGAGAGGGTTCCATACTATAACCGGTTGAACAAGAAAAGAGCTAACATGGCCTTGGCTTGGTACAATGAAAACAACCCGGAA GATTGCTATGAA TTTACGAGTGTGCTCTTGCATGATGTATGCAATTTTTGTGATGGAGGTGTTTGCCATGTGCACATTAATTTTAAGGCAAGGAATGTGACAACAAATTCAGAGGAGCTCTTCTTCGCTGAATTGGCTTTAATCAACAATGTTTTCGATCAATATAGTGGATATACGACCACTGCCTGCTGTATTATTGATGGCAACTGTCTTGGTGGTTTGAGGAATGTGCTGCTCAATGGATG TTTTTTGCGAGAGGAGCGTTATGATGAAAAAAATTGCTACGCATGTGATGAAAAGATTAAGCACCCCACAGGAAGTACCTACAAAGGAGGTCATTATGCCGAAGACTATTTAGTACAGGGAATCTTATGAATCACAGATATTTATGTTTTCATGTAATCTATTAGTACATCATTTTGATGGTTTGGGAGCTGTATGAACTAGTAAAGCATCCTACCACTATACATGCTCTGAAAATTAAAAGAGGCCCCTCGTATATGCTACT                   ]
[-] EMBL CF310026             [                                                                                                                                                                                                                                                                                                                                                                                      GAA TTTACGAGTGTGCTCTTGCATGATGTATGCAATTTTTGTGATGGAGGTGTTTGCCATGTGCACATTAATTTTAAGGCAAGGAATGTGACAACAAATTCAGAGGAGCTCTTCTTCGCTGAATTGGCTTTAATCAACAATGTTTTCGATCAATATAGTGGATATACGACCACTGCCTGCTGTATTATTGATGGCAACTGTCTTGGTGGTTTGAGGAATGTGCTGCTCAATGGATGTTTTTTTGCGAGAGGAGCGTTATGATGAAAAAAATTGCTACGCATGTGATGAAAAGATTAAGCACCCCACAGGAAGTACCTACAAAGGAGGTCATTATGCCGAAGACTATTTAGTACAGGGAATCTTATGAATCACAGATATTTATGTTTTCATGTAATCTATTAGTACATCATTTTGATGGTTTGGGAGCTGTATGAACTAGTAAAGCATCCTACCACTATACATGCTCTGAAAATTATGCAAGGCCCCTCGTATATGCTACTTGTGGACCCAAAAAAAAAA]




>consensus_11959#1
NCGACGCCGACGCCGACGTCGGTCGCCGCGAAATCTGCCGTTGCGGGAGGAGGAGAGGTG
TCCACGGAGACTCCGCGCAGGAGCGCGCGACTGCAGCAAGCAGCCAAGAAGAAGCGGTCC
CGCGATGCTTCGCTCCCTCCCGCTCCCGCTCCCGCTCGACATCGGCAGGCCGGGAAGGTT
CTCTGCGCGCCGGAGATATCTGTTAAAAAAACAGTGGAAGGTACTATAAACGATGCTGAA
ATAGAGTCCATTGTTTTAAAACTATGGAATTTCACAGAAGAAGAGAGGGTTCCATACTAT
AACCGGTTGAACAAGAAAAGAGCTAACATGGCCTTGGCTTGGTACAATGAAAACAACCCG
GAAGATTGCTATGAATTTACGAGTGTGCTCTTGCATGATGTATGCAATTTTTGTGATGGA
GGTGTTTGCCATGTGCACATTAATTTTAAGGCAAGGAATGTGACAACAAATTCAGAGGAG
CTCTTCTTCGCTGAATTGGCTTTAATCAACAATGTTTTCGATCAATATAGTGGATATACG
ACCACTGCCTGCTGTATTATTGATGGCAACTGTCTTGGTGGTTTGAGGAATGTGCTGCTC
AATGGATGTTTTTTGCGAGAGGAGCGTTATGATGAAAAAAATTGCTACGCATGTGATGAA
AAGATTAAGCACCCCACAGGAAGTACCTACAAAGGAGGTCATTATGCCGAAGACTATTTA
GTACAGGGAATCTTATGAATCACAGATATTTATGTTTTCATGTAATCTATTAGTACATCA
TTTTGATGGTTTGGGAGCTGTATGAACTAGTAAAGCATCCTACCACTATACATGCTCTGA
AAATTATGCAAGGCCCCTCGTATATGCTACTTGTGGACCCAAAAAAAAAA

consensusID : consensus_11959#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence

                              [AGAGGACGAGACAAGGGGGGAGGTCATTATGCCGAAGACTATTTAATACAGGGAATTTTATGAATCACAGATATTTATGTTTTCATGTAATCTATTAGTACATCATTTTGATGGTTTGGGAGCTGTATGAACTAGTAAAGCATCCTACCCCTATACATGCTTTGAAAATTATGCAAGGCCCCTTGTATATGCTACTTGTGGACCCAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA]

[-] EMBL CA761063             [AGAGGACGAGACAAGGGGGGAGGTCATTATGCCGAAGACTATTTAATACAGGGAATTTTATGAATCACAGATATTTATGTTTTCATGTAATCTATTAGTACATCATTTTGATGGTTTGGGAGCTGTATGAACTAGTAAAGCATCCTACCCCTATACATGCTTTGAAAATTATGCAAGGCCCCTTGTATATGCTACTTGTGGACCCAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA]




>consensus_11959#2
AGAGGACGAGACAAGGGGGGAGGTCATTATGCCGAAGACTATTTAATACAGGGAATTTTA
TGAATCACAGATATTTATGTTTTCATGTAATCTATTAGTACATCATTTTGATGGTTTGGG
AGCTGTATGAACTAGTAAAGCATCCTACCCCTATACATGCTTTGAAAATTATGCAAGGCC
CCTTGTATATGCTACTTGTGGACCCAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      CGCGAAATCTGCCGTTGCGGGAGGAGGAGAGGTGTCCACGGAGACTCCGCGCAGGAGCGC 60
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      GCGACTGCAGCAAGCAGCCAAGAAGAAGCGGTCCCGCGATGCTTCGCTCCCTCCCGCTCC 120
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      CGCTCCCGCTCGACATCGGCAGGCCGGGAAGGTTCTCTGCGCGCCGGAGTAAGCTTCTTG 180
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      TTGCCTCGTTTCCCTCCTCCTCTGCCCCCCTACAATTTTCCGCCTCTGCTCTTGCTCTTG 240
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      CAAGATCGATTCAATTTTCATCTTATGCCGAGCGGCTAGGCTAGGGTTTACTTTCCCCGC 300
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      CCCCACTACTTCCAAATTTATTTCATGAGTAAATTTTACAAAATTACATCTACTTTGACT 360
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      AAATTATCACAAAACTACAGATTTATTAAGACCAAGTATCACAAAACTACAGTTTTAGTA 420
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      CTAGAGTTATCACAAAACTACAAATTTTACAGTGCCTGCCACTACTATTATTTTAAGAGT 480
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      TATAAATGTTGTTAAATATGTAGTTTGGTGATCTTCTATCTTAAATCCGTAGTTCTTTGA 540
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      TAAATTTGGTTCTAAATATGTAGTGTTATGATACACCGCCTTAAATTTGTAGTTTTGTGA 600
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      TAGTTTGGTGAAAGTAATTGTAGTTTTCTGAATTTACTCTTATTTCATTATCCACCCCAC 660
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      AAAACGAGGTCGGAAATTTTACGCCATTACTCCACTAGATAGAATAGGCCTCACAACCTC 720
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      CACTGCCCTTCAAAAAACGTTGTGAGTTTTATATGGGTAAACAGGAAATTTAAAACATAC 780
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      GGCCTGTCTGCATCTTCATGTACAATTTTTTGTTATTCTCTTTGGGTTTTGAACCAAACC 840
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      AGCTTGTACAAAAACTTGGGGTGTTTCATCAATGGCAAAAGGGAACATGTAAACGTTATA 900
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      GAGAATTTCTCATCACTGTATCACTCATACCACAGTATGTTCTACCTGACTCCCACTAGG 960
                                                                                   

consensus_11959#1      --------NCGACGCCGACGCCGAC-GTCGGTCGCCGCGAAATCTGCCGTTGCGGGAGGA 51
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      GGTATATAATGGTGATAATGCCTTCCGGTTGCTACCTTCATTCTTCCTACTAAGATAGGG 1020
                                                                                   

consensus_11959#1      GGAGAGGTGTCCACGGAGAC-------TCCGCGCAGGA-GCGCGCGACTGCAGCAAGCAG 103
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      TTTACTACTTTCTAAGAAAAAGAACGATCTTCATAGGCTGAGTTTGCAAATAATGCACAC 1080
                                                                                   

consensus_11959#1      CCAAGAAGAAGCGGTCCCGCGATGCTTCGCTCCCTCCCGCTCCCGCTCCCGCTCGACATC 163
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      CCAACTAGGA-TGTTGCCTATATTTCTAGCATTAGCTGCCTTCCGTTGAAATAAGATGGG 1139
                                                                                   

consensus_11959#1      GGCAGGCCGGGAAGGTTCTCTGCGCGCCGGAGATATCTGTTAAAAAAACAGTGGAAGGTA 223
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      CGTAGCTCAGAAATGAATGCTAT-TGTGCAGGATATCTGTTAAAAAAACAGTGGAAGGTA 1198
                                                                                   

consensus_11959#1      CTATAAACGATGCTGAAATAGAGTCCATTGTTTTAAAACTATGGAATTTCACAGAAGAAG 283
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      CTATAAACGATGCTGAAATAGAGTCCATTGTTTTAAAACTATGGAATTTCACAGAAGAAG 1258
                                                                                   

consensus_11959#1      AGAGGGTTCCATACTATAACCGGTTGAACAAGAAAAGAGCTAACATGGCCTTGGCTTGGT 343
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      AGAGGGTTCCATACTATAACCGGTTGAACAAGAAAAGAGCTAACATGGCCTTGGCTTGGT 1318
                                                                                   

consensus_11959#1      ACAATGAAAACAACCCGGAAGATTGCTATGAATTTACGAGTGTGCTCTTGCATGATGTAT 403
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      ACAATGAAAACAACCCGGAAGATTGCTATGAATTTACGAGTGTGCTCTTGCATGATGTAT 1378
                                                                                   

consensus_11959#1      GCAATTTTTGTGATGGAGGTGTTTGCCATGTGCACATTAATTTTAAGGCAAGGAATGTGA 463
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      GCAATTTTTGTGATGGAGGTGTTTGCCATGTGCACATCAATTTTAAGGCAAGGAATGTGA 1438
                                                                                   

consensus_11959#1      CAACAAATTCAGAGGAGCTCTTCTTCGCTGAATTGGCTTTAATCAACAATGTTTTCGATC 523
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      CAACAAATTCAGAGGAGCTCTTCTTCGCTGAATTGGCTTTAATCAACAATGTTTTCGATC 1498
                                                                                   

consensus_11959#1      AATATAGTGGATATACGACCACTGCCTGCTGTATTATTGATGGCAACTGTCTTGGTGGTT 583
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      AATATAGTGGATATACGACCACTGCCTGCTGTATTATTGATGGCAACTGTCTTGGTATGC 1558
                                                                                   

consensus_11959#1      TG-----------AGGAATGTGCTGCTCAATGGATGTTTTTTGCGAGAGGAGCGTTATGA 632
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      TCCTCTCTTATATATATTTATACACACAAACACATGTGTTTCTCTTCTTTCATGATTGGT 1618
                                                                                   

consensus_11959#1      TGAAAAAAATTGCTA-----CGCATGTGATGAAAAGATTAAGCACCCCACAGGAAGTACC 687
consensus_11959#2      ------------------------------------------------AGAGGACGAGAC 12
consensus_11959#0      TGAGCAGAAATCATAAAAGGCGCAT-TGTTTCTTTTACTAGTTTCCCTTGTGCGTGTATA 1677
                                                                          *   *    

consensus_11959#1      TACAAAGGAGGTCAT-TATGCC-GAAGACTATTTAGTACAG-----GGAATCTTATGAA- 739
consensus_11959#2      AAGGGGGGAGGTCAT-TATGCC-GAAGACTATTTAATACAG-----GGAATTTTATGAA- 64
consensus_11959#0      TGTGAAAAAGTAAACCTGTGTTTGCACATCTTTTATTGTTGATTTAGGCAAATTATGATG 1737
                               **   *  * **   * * *   **** *   *     ** *  ******  

consensus_11959#1      ---TCACAGATATTTATGTTTTCATGTAATC-TATTAGTACATCATTTTGATGGTTTGGG 795
consensus_11959#2      ---TCACAGATATTTATGTTTTCATGTAATC-TATTAGTACATCATTTTGATGGTTTGGG 120
consensus_11959#0      GTTCCATATTCACTCAGCACATGGTGAAGTTACACTCTTCAATGAAATGTATAATCCCAT 1797
                           ** *   * * *     *  ** * *   * *  *  ** *  *  **  *     

consensus_11959#1      AGCTGTAT---GAACTAGTAAAGCATCCTACCACTATACATGCTCTGAAAATTATGCAAG 852
consensus_11959#2      AGCTGTAT---GAACTAGTAAAGCATCCTACCCCTATACATGCTTTGAAAATTATGCAAG 177
consensus_11959#0      AAATGTGTTTGGAATTTTTAAGGAAACTCTTCAAATGTTATGTGCAAAGTGTTTTCCTCT 1857
                       *  *** *   *** *  *** * * *    *       ***     *   ** * *   

consensus_11959#1      GCCCCTCGTATATGCTACTTGTGGACCCAAAA------AAAAAA---------------- 890
consensus_11959#2      GCCCCTTGTATATGCTACTTGTGGACCCAAAA------AAAAAAAAAAAAGAAAAAAAAA 231
consensus_11959#0      GTCACATGAAAATGTTACTAGTTGATTCACTATGTTCTAGAAAATTATTTATACTTAATG 1917
                       * * *  * * *** **** ** **  **  *      * ****                

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      AAAAAA------------------------------------------------------ 237
consensus_11959#0      TTCAAATGTGTGTTTTGGAGGCTATGTCAATGTTCTGACAATAAGTAGAAGAGATTGGTG 1977
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      GGGTAGTTAGGTTAACATGAAACAATGGACAAAAGCAGGAGTAGAATAGCAGATTGGGTC 2037
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      CCAACATTCATGCACATAGGTGGTGTCACCGATGTACCAGTAAAGGTAGCATATGTACTT 2097
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      TACTGTTTTCTCTCTCAGGATGGCAATATCACTGGTAACAAGTTTTTGTGGAGTGCTCAA 2157
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      TATGAATGGTTGTGCTTGCTTTCTATTAGTTGTCTTGTTGAATACTGGTGTATAAACATT 2217
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      TTGTAGTTTACCTTTGAGATGCTTATAAAGTTTGTATCGTAGGTGGTTTGAGGAATGTGC 2277
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      TGCTCAATGGATGTTTTTTGCGAGAGGAGCGTTATGATGAAAAAAATTGCTACGCATGTG 2337
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      ATGAAAAGATTAAGCACCCCACAGGAAGTACCTACAAAGGAGGTCATTATGCCGAAGACT 2397
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      ATTTAGTACAGGGAATCTTATGAATCACAGATATTTATGTTTTCATGTAATCTATTAGTA 2457
                                                                                   

consensus_11959#1      ------------------------------------------------------------
consensus_11959#2      ------------------------------------------------------------
consensus_11959#0      CATCATTTTGATGGTTTGGGAGCTGTATGAACTAGTAAAGCATCCTACCACTATACATGC 2517
                                                                                   

consensus_11959#1      --
consensus_11959#2      --
consensus_11959#0      TC 2519