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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1291 fasta sequence
[CAGATAAAGGCAAACAAACAGCTACCCTTGACAACATATCAAATGAAGGAAGCAAACCCTCAAACACAGATGGAAATGGGGCTGGTATCAGGGATGATCCTGGTGCGAGAGCTAGGAGCAGTCCTATTAGGGCTGATGCAAGTTTAACAAAAGTGGATGGCAACAATGGTGCTGATACTGCAGAGGCTGGTATATCTAGAGCTGAACCTGTGCCAACCAATGGTAAAGATTTAGCAATGGGCTCTACAGACAACGGACAGCCTCAACGTGTCAGGAAGGGGCGTGGTTTTACTCAACAATATGCATTTGCACGTCGATACAGGACACCATCTCCAGAGCGTTCCCCTGTTCGGTCTCGCTACAATGATGGAAGAAATGATAGGTGGAATCATTTTAATAGGTATGGAAGAAATGGTCCCTACGGTGCACGCTCACCAGTAAGAAGATATCGTGGTTCCCCAAGAGCCA-GTAGTCCGTCCAGATACCCAAGGAGAGACCGTAGCAGGAGCAGGTCACGCAGTCCATTGAGGTACCGTGAGCGTGGAGGATATCGCCGCCCCAGTCCAAGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACCA-GAGGCGAGATGTAAGA-AA-CA-GGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACCGTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATCCCTCGAAGTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCA-GGAGTTGAAAACCCTATGTTCCATGGTAGCTTAGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTTTAAGTTTTAAAATGCTTCGCATCATAACCTAAGTATAATTTATAGGTAAATCTACCCTTTGTCGTCTTTTTATGATTGGAAGTTTGTAGTCTCTTGTCCTATTAAAGCCTGTTGGTAACTTTGTTTAGATAGTCTCTTGTCCTATTAAAGTCTGTTGGTAACTTTGTTTAGATATTTGTATTGGCACGTTTCTTGTTTTC-AACACGGAGTTTTTCCTCTGTTGCCCCAAAAAAAAAAAAAAAAAGAAATCTGTTAACT]
[+] EMBL AK059946 [CAGATAAAGGCAAACAAACAGCTACCCTTGACAACATATCAAATGAAGGAAGCAAACCCTCAAACACAGATGGAAATGGGGCTGGTATCAGGGATGATCCTGGTGCGAGAGCTAGGAGCAGTCCTATTAGGGCTGATGCAAGTTTAACAAAAGTGGATGGCAACAATGGTGCTGATACTGCAGAGGCTGGTATATCTAGAGCTGAACCTGTGCCAACCAATGGTAAAGATTTAGCAATGGGCTCTACAGACAACGGACAGCCTCAACGTGTCAGGAAGGGGCGTGGTTTTACTCAACAATATGCATTTGCACGTCGATACAGGACACCATCTCCAGAGCGTTCCCCTGTTCGGTCTCGCTACAATGATGGAAGAAATGATAGGTGGAATCATTTTAATAGGTATGGAAGAAATGGTCCCTACGGTGCACGCTCACCAGTAAGAAGATATCGTGGTTCCCCAAGAGCCA GTAGTCCGTCCAGATACCCAAGGAGAGACCGTAGCAGGAGCAGGTCACGCAGTCCATTGAGGTACCGTGAGCGTGGAGGATATCGCCGCCCCAGTCCAAGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACCA GAGGCGAGATGTAAGA AA CA GGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACCGTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATCCCTCGAAGTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCA GGAGTTGAAAACCCTATGTTCCATGGTAGCTTGGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACT ]
[+] EMBL OS1441A [ AGGTGGAATCATTTTAATAGGTATGGAAGAAATGGTCCCTACGGTGCACGCTCACCAGTAAGAAGATATCGTGGTTCCCCAAGAGCCA GTAGTCCGTCCAGATACCCAAGGAGAGACCGTAGCAGGAGCAGGTCACGCAGTCCATTGAGGTACCGTGAGCGTGGAGGATATCGCCGCCCCAGTCCAAGGCACAGCCGCAGCCGCAGCCCAGCGGAG ACCA GAGGCGAGATGTAAGA AA CA GGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACCGTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGAT ]
[+] EMBL BI805526 [ GTGGTTCCCCAAGAGCCACGTAGTCCGTCCAGATACCC AGGAGAGACCGTAGCAGGAGCAGGTCACGCAGTCCCTTGAGGTACCGTGAGCGTGGAGGATATCGCCGCCCCAGTCCNAGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACCACGAGGCGAGATGTAAGATAACCACGGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCCCCGTAATAGCAGCCCTCCTGTCCATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATCCCTCGAAGTCCAGATCACCAGATGCTCCTGCCCAAAAGGGGAGCTCNAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCACGGAGTTGAAAACCCTATGTTCCCTGGTAGCTTGGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTCTAAGTTCTAAA ]
[-] EMBL CB635664 [ CAGATACCCAAGGAGAGACCGTAGCAGGAGCAGGTCACGCAGTCCATTGAGGTACCGTGAGCGTGGAGGATATCGCCGCCCCAGTCCAAGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACCA GAGGCGAGATGTAAGA AA CA GGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACCGTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATCCCTCGAAGTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCA GGAGTTGAAAACCCTATGTTCCATGGTAGCTTAGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTTTAAGTTTTAAAATGCTTCGCATCATAACCTAAGTATAATTTATAGGTAAATCTACCCTTTGTCGTCTTTTTATGATTGGAAGTTTGTAGTCTCTTGTCCTATTAAAGCCTGTTGGTAACTTTGTTTAGATAGTCTCTTGTCCTATTAAAGTCTGTTGGTAACTTTGTTTAGATATTTGTATTGGCACGTTTCTTGTTTTC AACACGGAGTTTTTCCTC ]
[-] EMBL CB634374 [ GTCACGCAGTCCATTGAGGTACCGTGAGCGTGGAGGATATCGCCGCCCCAGTCCAAGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACCA GAGGCGAGATGTAAGA AA CA GGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACCGTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATCCCTCGAAGTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCA GGAGTTGAAACCCCTATGTTCCATGGTAGCTTAGTATTGAGTACTCCCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTTTAAGTTTTAAAATGCTTCGCATCATACCCTAAGTATAATTTATAGGTAAATCTCCCCTTTGTCGTCTTTTTATGATTGGAAGTTTGTAGTCTCTTGTCCTATTAAAGCCTGTTGGTAACTTTGTTTAGATAGTCTCTTGTCCTATTAAAGTCTGTTGGTAACTTTGTTTAGATATTTGTATTGGCACGTTTCTTGTTTTCAAACAC GAGTTTTTCCTCTGTTGCCCCAAAAAAAAAAAAAAAAAGA ]
[-] EMBL CB635662 [ AGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACCA GAGGCGAGATGTAAGA AA CA GGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACCGTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATCCCTCGAAGTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCA GGAGTTGAAAACCCTATGTTCCATGGTAGCTTAGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTTTAAGTTTTAAAATGCTTCGCATCATACCCTAAGTATAATTTATAGGTAAATCTCCCCTTTGTCGTCTTTTTATGATTGGAAGTTTGTAGTCTCTTGTCCTATTAAAGCCTGTTGGTAACTTTGTTTAGATAGTCTCTTGTCCTATTAAAGTCTGTTGGTAACTTTGTTTAGATATTTGTATTGGCACGTTTCTTGTTTTA AAGGAGGAGTTTTTCCTCTGTTGCC ]
[+] EMBL CA764517 [ AAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCA GGAGTTGAAAACCCTATGTTCCATGGTAGCTTAGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTCTAAGTTCTAAAATGCTTCGCATCATAACCTAAGTATAATTTATAGGTAAATCTACCCTTTGTCGTCTTTTTATGATTGGAGGTTTGTAGTCTCTTGTCCTATTAAAGCCTGTTGGTAACTTTGTTTAGATAGTCTCTTGTCCTATTAAAGTCTGTTGGTAACTTTGTTTAGATATTTGTATTGGCACGTTTCTTGTTTTC AACAC GAGTTTTTCCTCTGTTG ACAAGAAAAAAATGAGCTGTGAATCTGTTAACT]
consensusID : consensus_11962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 403 fasta sequence
[AGAGCCGTGATCCCTCGAATTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCAGGAGTTGAAAACCCTATGTTCCATGGTAGCTTGGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTCTAAGTTCTAAAATGCTTCGCATCATAACCTAAGCATAATTTATAGGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF327363 [AGAGCCGTGATCCCTCGAATTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCAGGAGTTGAAAACCCTATGTTCCATGGTAGCTTGGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTCTAAGTTCTAAAATGCTTCGCATCATAACCTAAGCATAATTTATAGGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[-] EMBL CF327362 [ aAGCCGTGATCCCTCGAATTCCAGATCCCCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCACCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCAGGAGTTGAAAACCCTATGTTCCATGGTAGCTTGGTATTGAGTACTCCCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTTTTTTTTTGGAACGTTTTTCATTCAAAGATTGTTGTTTTTAGGCATTTTCTATTTGGATATGATATTTAGACTTTTAAGTTTTAAAATGCTTCGCATCATAACCTAAGCATAATTTATAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11962#0 CAGATAAAGGCAAACAAACAGCTACCCTTGACAACATATCAAATGAAGGAAGCAAACCCT 60
consensus_11962#1 ------------------------------------------------------------
consensus_11962#0 CAAACACAGATGGAAATGGGGCTGGTATCAGGGATGATCCTGGTGCGAGAGCTAGGAGCA 120
consensus_11962#1 ------------------------------------------------------------
consensus_11962#0 GTCCTATTAGGGCTGATGCAAGTTTAACAAAAGTGGATGGCAACAATGGTGCTGATACTG 180
consensus_11962#1 ------------------------------------------------------------
consensus_11962#0 CAGAGGCTGGTATATCTAGAGCTGAACCTGTGCCAACCAATGGTAAAGATTTAGCAATGG 240
consensus_11962#1 ------------------------------------------------------------
consensus_11962#0 GCTCTACAGACAACGGACAGCCTCAACGTGTCAGGAAGGGGCGTGGTTTTACTCAACAAT 300
consensus_11962#1 ------------------------------------------------------------
consensus_11962#0 ATGCATTTGCACGTCGATACAGGACACCATCTCCAGAGCGTTCCCCTGTTCGGTCTCGCT 360
consensus_11962#1 ------------------------------------------------------------
consensus_11962#0 ACAATGATGGAAGAAATGATAGGTGGAATCATTTTAATAGGTATGGAAGAAATGGTCCCT 420
consensus_11962#1 ------------------------------------------------------------
consensus_11962#0 ACGGTGCACGCTCACCAGTAAGAAGATATCGTGGTTCCCCAAGAGCCAGTAGTCCGTCCA 480
consensus_11962#1 ------------------------------------------------------------
consensus_11962#0 GATACCCAAGGAGAGACCGTAGCAGGAGCAGGTCACGCAGTCCATTGAGGTACCGTGAGC 540
consensus_11962#1 ------------------------------------------------------------
consensus_11962#0 GTGGAGGATATCGCCGCCCCAGTCCAAGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACC 600
consensus_11962#1 ------------------------------------------------------------
consensus_11962#0 AGAGGCGAGATGTAAGAAACAGGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACC 660
consensus_11962#1 ------------------------------------------------------------
consensus_11962#0 GTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATC 720
consensus_11962#1 ------------------------------------------------AGAGCCGTGATC 12
************
consensus_11962#0 CCTCGAAGTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCA 780
consensus_11962#1 CCTCGAATTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCA 72
******* ****************************************************
consensus_11962#0 GGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACT 840
consensus_11962#1 GGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACT 132
************************************************************
consensus_11962#0 GAGATGTGATATCAGAAGTTGAGGTGATATCAGGAGTTGAAAACCCTATGTTCCATGGTA 900
consensus_11962#1 GAGATGTGATATCAGAAGTTGAGGTGATATCAGGAGTTGAAAACCCTATGTTCCATGGTA 192
************************************************************
consensus_11962#0 GCTTAGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCT 960
consensus_11962#1 GCTTGGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCT 252
**** *******************************************************
consensus_11962#0 TCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATG 1020
consensus_11962#1 TCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATG 312
************************************************************
consensus_11962#0 ATATTTAGACTTTTAAGTTTTAAAATGCTTCGCATCATAACCTAAGTATAATTTATAGGT 1080
consensus_11962#1 ATATTTAGACTTCTAAGTTCTAAAATGCTTCGCATCATAACCTAAGCATAATTTATAGGT 372
************ ****** ************************** *************
consensus_11962#0 AAATCTACCCTTTGTCGTCTTTTTATGATTGGAAGTTTGTAGTCTCTTGTCCTATTAAAG 1140
consensus_11962#1 NAAAAAAAAAAAAAAAAAA----AAAAAAAAAAAA------------------------- 403
** * * * **
consensus_11962#0 CCTGTTGGTAACTTTGTTTAGATAGTCTCTTGTCCTATTAAAGTCTGTTGGTAACTTTGT 1200
consensus_11962#1 ------------------------------------------------------------
consensus_11962#0 TTAGATATTTGTATTGGCACGTTTCTTGTTTTCAACACGGAGTTTTTCCTCTGTTGCCCC 1260
consensus_11962#1 ------------------------------------------------------------
consensus_11962#0 AAAAAAAAAAAAAAAAAGAAATCTGTTAACT 1291
consensus_11962#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||