These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1291 fasta sequence [CAGATAAAGGCAAACAAACAGCTACCCTTGACAACATATCAAATGAAGGAAGCAAACCCTCAAACACAGATGGAAATGGGGCTGGTATCAGGGATGATCCTGGTGCGAGAGCTAGGAGCAGTCCTATTAGGGCTGATGCAAGTTTAACAAAAGTGGATGGCAACAATGGTGCTGATACTGCAGAGGCTGGTATATCTAGAGCTGAACCTGTGCCAACCAATGGTAAAGATTTAGCAATGGGCTCTACAGACAACGGACAGCCTCAACGTGTCAGGAAGGGGCGTGGTTTTACTCAACAATATGCATTTGCACGTCGATACAGGACACCATCTCCAGAGCGTTCCCCTGTTCGGTCTCGCTACAATGATGGAAGAAATGATAGGTGGAATCATTTTAATAGGTATGGAAGAAATGGTCCCTACGGTGCACGCTCACCAGTAAGAAGATATCGTGGTTCCCCAAGAGCCA-GTAGTCCGTCCAGATACCCAAGGAGAGACCGTAGCAGGAGCAGGTCACGCAGTCCATTGAGGTACCGTGAGCGTGGAGGATATCGCCGCCCCAGTCCAAGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACCA-GAGGCGAGATGTAAGA-AA-CA-GGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACCGTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATCCCTCGAAGTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCA-GGAGTTGAAAACCCTATGTTCCATGGTAGCTTAGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTTTAAGTTTTAAAATGCTTCGCATCATAACCTAAGTATAATTTATAGGTAAATCTACCCTTTGTCGTCTTTTTATGATTGGAAGTTTGTAGTCTCTTGTCCTATTAAAGCCTGTTGGTAACTTTGTTTAGATAGTCTCTTGTCCTATTAAAGTCTGTTGGTAACTTTGTTTAGATATTTGTATTGGCACGTTTCTTGTTTTC-AACACGGAGTTTTTCCTCTGTTGCCCCAAAAAAAAAAAAAAAAAGAAATCTGTTAACT] [+] EMBL AK059946 [CAGATAAAGGCAAACAAACAGCTACCCTTGACAACATATCAAATGAAGGAAGCAAACCCTCAAACACAGATGGAAATGGGGCTGGTATCAGGGATGATCCTGGTGCGAGAGCTAGGAGCAGTCCTATTAGGGCTGATGCAAGTTTAACAAAAGTGGATGGCAACAATGGTGCTGATACTGCAGAGGCTGGTATATCTAGAGCTGAACCTGTGCCAACCAATGGTAAAGATTTAGCAATGGGCTCTACAGACAACGGACAGCCTCAACGTGTCAGGAAGGGGCGTGGTTTTACTCAACAATATGCATTTGCACGTCGATACAGGACACCATCTCCAGAGCGTTCCCCTGTTCGGTCTCGCTACAATGATGGAAGAAATGATAGGTGGAATCATTTTAATAGGTATGGAAGAAATGGTCCCTACGGTGCACGCTCACCAGTAAGAAGATATCGTGGTTCCCCAAGAGCCA GTAGTCCGTCCAGATACCCAAGGAGAGACCGTAGCAGGAGCAGGTCACGCAGTCCATTGAGGTACCGTGAGCGTGGAGGATATCGCCGCCCCAGTCCAAGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACCA GAGGCGAGATGTAAGA AA CA GGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACCGTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATCCCTCGAAGTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCA GGAGTTGAAAACCCTATGTTCCATGGTAGCTTGGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACT ] [+] EMBL OS1441A [ AGGTGGAATCATTTTAATAGGTATGGAAGAAATGGTCCCTACGGTGCACGCTCACCAGTAAGAAGATATCGTGGTTCCCCAAGAGCCA GTAGTCCGTCCAGATACCCAAGGAGAGACCGTAGCAGGAGCAGGTCACGCAGTCCATTGAGGTACCGTGAGCGTGGAGGATATCGCCGCCCCAGTCCAAGGCACAGCCGCAGCCGCAGCCCAGCGGAG ACCA GAGGCGAGATGTAAGA AA CA GGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACCGTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGAT ] [+] EMBL BI805526 [ GTGGTTCCCCAAGAGCCACGTAGTCCGTCCAGATACCC AGGAGAGACCGTAGCAGGAGCAGGTCACGCAGTCCCTTGAGGTACCGTGAGCGTGGAGGATATCGCCGCCCCAGTCCNAGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACCACGAGGCGAGATGTAAGATAACCACGGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCCCCGTAATAGCAGCCCTCCTGTCCATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATCCCTCGAAGTCCAGATCACCAGATGCTCCTGCCCAAAAGGGGAGCTCNAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCACGGAGTTGAAAACCCTATGTTCCCTGGTAGCTTGGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTCTAAGTTCTAAA ] [-] EMBL CB635664 [ CAGATACCCAAGGAGAGACCGTAGCAGGAGCAGGTCACGCAGTCCATTGAGGTACCGTGAGCGTGGAGGATATCGCCGCCCCAGTCCAAGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACCA GAGGCGAGATGTAAGA AA CA GGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACCGTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATCCCTCGAAGTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCA GGAGTTGAAAACCCTATGTTCCATGGTAGCTTAGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTTTAAGTTTTAAAATGCTTCGCATCATAACCTAAGTATAATTTATAGGTAAATCTACCCTTTGTCGTCTTTTTATGATTGGAAGTTTGTAGTCTCTTGTCCTATTAAAGCCTGTTGGTAACTTTGTTTAGATAGTCTCTTGTCCTATTAAAGTCTGTTGGTAACTTTGTTTAGATATTTGTATTGGCACGTTTCTTGTTTTC AACACGGAGTTTTTCCTC ] [-] EMBL CB634374 [ GTCACGCAGTCCATTGAGGTACCGTGAGCGTGGAGGATATCGCCGCCCCAGTCCAAGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACCA GAGGCGAGATGTAAGA AA CA GGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACCGTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATCCCTCGAAGTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCA GGAGTTGAAACCCCTATGTTCCATGGTAGCTTAGTATTGAGTACTCCCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTTTAAGTTTTAAAATGCTTCGCATCATACCCTAAGTATAATTTATAGGTAAATCTCCCCTTTGTCGTCTTTTTATGATTGGAAGTTTGTAGTCTCTTGTCCTATTAAAGCCTGTTGGTAACTTTGTTTAGATAGTCTCTTGTCCTATTAAAGTCTGTTGGTAACTTTGTTTAGATATTTGTATTGGCACGTTTCTTGTTTTCAAACAC GAGTTTTTCCTCTGTTGCCCCAAAAAAAAAAAAAAAAAGA ] [-] EMBL CB635662 [ AGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACCA GAGGCGAGATGTAAGA AA CA GGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACCGTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATCCCTCGAAGTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCA GGAGTTGAAAACCCTATGTTCCATGGTAGCTTAGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTTTAAGTTTTAAAATGCTTCGCATCATACCCTAAGTATAATTTATAGGTAAATCTCCCCTTTGTCGTCTTTTTATGATTGGAAGTTTGTAGTCTCTTGTCCTATTAAAGCCTGTTGGTAACTTTGTTTAGATAGTCTCTTGTCCTATTAAAGTCTGTTGGTAACTTTGTTTAGATATTTGTATTGGCACGTTTCTTGTTTTA AAGGAGGAGTTTTTCCTCTGTTGCC ] [+] EMBL CA764517 [ AAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCA GGAGTTGAAAACCCTATGTTCCATGGTAGCTTAGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTCTAAGTTCTAAAATGCTTCGCATCATAACCTAAGTATAATTTATAGGTAAATCTACCCTTTGTCGTCTTTTTATGATTGGAGGTTTGTAGTCTCTTGTCCTATTAAAGCCTGTTGGTAACTTTGTTTAGATAGTCTCTTGTCCTATTAAAGTCTGTTGGTAACTTTGTTTAGATATTTGTATTGGCACGTTTCTTGTTTTC AACAC GAGTTTTTCCTCTGTTG ACAAGAAAAAAATGAGCTGTGAATCTGTTAACT] consensusID : consensus_11962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 403 fasta sequence [AGAGCCGTGATCCCTCGAATTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCAGGAGTTGAAAACCCTATGTTCCATGGTAGCTTGGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTCTAAGTTCTAAAATGCTTCGCATCATAACCTAAGCATAATTTATAGGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF327363 [AGAGCCGTGATCCCTCGAATTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCAGGAGTTGAAAACCCTATGTTCCATGGTAGCTTGGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGATATTTAGACTTCTAAGTTCTAAAATGCTTCGCATCATAACCTAAGCATAATTTATAGGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [-] EMBL CF327362 [ aAGCCGTGATCCCTCGAATTCCAGATCCCCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGGCGCAGCACCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGAGGTGATATCAGGAGTTGAAAACCCTATGTTCCATGGTAGCTTGGTATTGAGTACTCCCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTTTTTTTTTGGAACGTTTTTCATTCAAAGATTGTTGTTTTTAGGCATTTTCTATTTGGATATGATATTTAGACTTTTAAGTTTTAAAATGCTTCGCATCATAACCTAAGCATAATTTATAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11962#0 CAGATAAAGGCAAACAAACAGCTACCCTTGACAACATATCAAATGAAGGAAGCAAACCCT 60 consensus_11962#1 ------------------------------------------------------------ consensus_11962#0 CAAACACAGATGGAAATGGGGCTGGTATCAGGGATGATCCTGGTGCGAGAGCTAGGAGCA 120 consensus_11962#1 ------------------------------------------------------------ consensus_11962#0 GTCCTATTAGGGCTGATGCAAGTTTAACAAAAGTGGATGGCAACAATGGTGCTGATACTG 180 consensus_11962#1 ------------------------------------------------------------ consensus_11962#0 CAGAGGCTGGTATATCTAGAGCTGAACCTGTGCCAACCAATGGTAAAGATTTAGCAATGG 240 consensus_11962#1 ------------------------------------------------------------ consensus_11962#0 GCTCTACAGACAACGGACAGCCTCAACGTGTCAGGAAGGGGCGTGGTTTTACTCAACAAT 300 consensus_11962#1 ------------------------------------------------------------ consensus_11962#0 ATGCATTTGCACGTCGATACAGGACACCATCTCCAGAGCGTTCCCCTGTTCGGTCTCGCT 360 consensus_11962#1 ------------------------------------------------------------ consensus_11962#0 ACAATGATGGAAGAAATGATAGGTGGAATCATTTTAATAGGTATGGAAGAAATGGTCCCT 420 consensus_11962#1 ------------------------------------------------------------ consensus_11962#0 ACGGTGCACGCTCACCAGTAAGAAGATATCGTGGTTCCCCAAGAGCCAGTAGTCCGTCCA 480 consensus_11962#1 ------------------------------------------------------------ consensus_11962#0 GATACCCAAGGAGAGACCGTAGCAGGAGCAGGTCACGCAGTCCATTGAGGTACCGTGAGC 540 consensus_11962#1 ------------------------------------------------------------ consensus_11962#0 GTGGAGGATATCGCCGCCCCAGTCCAAGGCACAGCCGCAGCCGCAGCCCAGCGGAGCACC 600 consensus_11962#1 ------------------------------------------------------------ consensus_11962#0 AGAGGCGAGATGTAAGAAACAGGCTTCGATCAGGTCGGGATGGTGGTGGCCCTGATCACC 660 consensus_11962#1 ------------------------------------------------------------ consensus_11962#0 GTAATAGCAGCCCTCCTGTCAATAGAGGAAGGTCAAGATCCAGGTCGAAGAGCCGTGATC 720 consensus_11962#1 ------------------------------------------------AGAGCCGTGATC 12 ************ consensus_11962#0 CCTCGAAGTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCA 780 consensus_11962#1 CCTCGAATTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCA 72 ******* **************************************************** consensus_11962#0 GGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACT 840 consensus_11962#1 GGCGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACT 132 ************************************************************ consensus_11962#0 GAGATGTGATATCAGAAGTTGAGGTGATATCAGGAGTTGAAAACCCTATGTTCCATGGTA 900 consensus_11962#1 GAGATGTGATATCAGAAGTTGAGGTGATATCAGGAGTTGAAAACCCTATGTTCCATGGTA 192 ************************************************************ consensus_11962#0 GCTTAGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCT 960 consensus_11962#1 GCTTGGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTTAATGGCTTAATGTACTCT 252 **** ******************************************************* consensus_11962#0 TCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATG 1020 consensus_11962#1 TCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATG 312 ************************************************************ consensus_11962#0 ATATTTAGACTTTTAAGTTTTAAAATGCTTCGCATCATAACCTAAGTATAATTTATAGGT 1080 consensus_11962#1 ATATTTAGACTTCTAAGTTCTAAAATGCTTCGCATCATAACCTAAGCATAATTTATAGGT 372 ************ ****** ************************** ************* consensus_11962#0 AAATCTACCCTTTGTCGTCTTTTTATGATTGGAAGTTTGTAGTCTCTTGTCCTATTAAAG 1140 consensus_11962#1 NAAAAAAAAAAAAAAAAAA----AAAAAAAAAAAA------------------------- 403 ** * * * ** consensus_11962#0 CCTGTTGGTAACTTTGTTTAGATAGTCTCTTGTCCTATTAAAGTCTGTTGGTAACTTTGT 1200 consensus_11962#1 ------------------------------------------------------------ consensus_11962#0 TTAGATATTTGTATTGGCACGTTTCTTGTTTTCAACACGGAGTTTTTCCTCTGTTGCCCC 1260 consensus_11962#1 ------------------------------------------------------------ consensus_11962#0 AAAAAAAAAAAAAAAAAGAAATCTGTTAACT 1291 consensus_11962#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||