cluster # 11963

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Oryza sativa
cluster # 11963 cluster # 11963 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11963#0 length = 758 sequences # 8

consensus_11963#1 length = 134 sequences # 1

consensusID : consensus_11963#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 758
fasta sequence

                              [AAAATGTCATCTTCCACCTCCGTCCTTTCCCCTCTCCTCGCTCACGCTCATGGCCGCGCCTC-TCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG-CCGGATTCTCGGCCTCCTCTCCACGAC-GGATTCTCCCGGCACCTCGCGCGAGCGGC-G-GCGGCGGCGG-CGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG-AATCCGAATGGCTGAGGG-AAACAC-TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCATTCTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTGCAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTGAGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGCTAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTACTGAATTGAGTTCATCAGGTTTCTTTGTGTGCCTGGGCGGGCGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATGCGATTTTGAGTAAAATACGCTAATGGTTCTTAAACTTAAAAAAA]

[+] EMBL AK071079             [AAAATGTCATCTTCCACCTCCGTCCTTTCCCCTCTCCTCGCTCACGCTCATGGCCGCGCCTC TCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGCCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGAGCGGC G GCGGCGGCGG CGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCATTCTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTGCAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTGAGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGCTAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTACTGAATTGAGTTCATCAGGTTTCTTTGTGTGCCTGGGCGGGCGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATGCGATTTTGAGTAAAATACGCTAATGGT                 ]
[+] EMBL AU065938             [       CATCTTCCACCTCCGTCCTTTCCCCTCTCCTCGCTCACGCTCATGGCCGCGCCTC TCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGCCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGAG GCC G GCGGCGGCGG CGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACAACGCTGCG GGTCATTCTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGA                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CA754082             [                      TCCTTTCCCCTCTCCTCGCTCACGCTCATGGCCGCGCCTC TCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGCCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGAGCGGC G GCGGCGGCGG CGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCATTCTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTGCAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTGAGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGCTAGATGGGTTTTGCTTTTGAA CATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTACTGAATTGAGTTCATCAGGTTTCTT                                                                                                                                     ]
[+] EMBL C26899               [                          TTCCCCTCTCCTCGCTCACGCTCATGGCCGCGCCTCGTCCCACCTCAAGGGCGTAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGNCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGA  GGC GNGCGGCGGCGG CGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB685778             [                                         TCACGCTCATGGCCGCGCCTC TCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGCCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGAGCGGC G GCGGCGGCGG CGGGGAGGAGGAGGACACCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCATTTTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTGCAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTGAGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGCTAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTACTGAATTGAGTTCATCAGGTTTCTTTGTGTGCCTGGGCGGGCGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATGCGATTTTGAGTAAAATACGCTA                      ]
[+] EMBL CB685777             [                                                 ATGGCCGCGCCTC TCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGCCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGAGCGGC G GCGGCGGCGG CGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCATTCTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTGCAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTGAGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGCTAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTACTGAATTGAGTTCATCAGGTTTCTTTGTGTGCCTGGGCGGGCGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATGCGATTTTGAGTAAAATACGCTAATG                   ]
[+] EMBL AA750590             [                                                                  CACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGCCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGA CGGCTG GCGGCGGCGG CGGGGAGGAGGAGGACAGCCGAGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGATTACCCCTGGAGGAGCAGCGAAGGAAATCCGAATGGCTGAGGGTAAACACTTTCACAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU089686             [                                                                                               CCCGGCTCAACCTCGCCCGGATTCTCGGCTTCCTCTCCACGACGGGATTCTCCCGGCACCTCGCGCGAGCGCC G NCGGCGGCGGCCGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGC ANACCACTGCGCGGTCATTCTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTGCAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTGAGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGCTAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTACTGAATTGAGTTCATCAGGTTTCTTTGTGTGCCTGGGCGGGCGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATGCGATTTTGAGTAAAATACGCTAATGGTTCTTAAACTTAAAAAAA]




>consensus_11963#0
AAAATGTCATCTTCCACCTCCGTCCTTTCCCCTCTCCTCGCTCACGCTCATGGCCGCGCC
TCTCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCGCCGGATTCTCG
GCCTCCTCTCCACGACGGATTCTCCCGGCACCTCGCGCGAGCGGCGGCGGCGGCGGCGGG
GAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCA
GGAGCAGCGCAGGAATCCGAATGGCTGAGGGAAACACTGCACAAGTGGCTCGACGACGAG
TACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCATTCTACGAG
TCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTG
CAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTG
AGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGC
TAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTA
CTGAATTGAGTTCATCAGGTTTCTTTGTGTGCCTGGGCGGGCGCTTGGTTGAGAAAATTG
AAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATGCGATTT
TGAGTAAAATACGCTAATGGTTCTTAAACTTAAAAAAA

consensusID : consensus_11963#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 134
fasta sequence

                              [CAGGCTTCTTTGTTCATGGGTGCCTGGGCGGGTGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCTAAAGATACACTGATCCAAAAATTTGCCTCTTGTTTGCAAC]

[+] EMBL CA765386             [CAGGCTTCTTTGTTCATGGGTGCCTGGGCGGGTGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCTAAAGATACACTGATCCAAAAATTTGCCTCTTGTTTGCAAC]




>consensus_11963#1
CAGGCTTCTTTGTTCATGGGTGCCTGGGCGGGTGCTTGGTTGAGAAAATTGAAAGATGAT
GTGATCATGTAATTGTAACTTGTAAGTACTTGCTAAAGATACACTGATCCAAAAATTTGC
CTCTTGTTTGCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11963#0      AAAATGTCATCTTCCACCTCCGTCCTTTCCCCTCTCCTCGCTCACGCTCATGGCCGCGCC 60
consensus_11963#1      ------------------------------------------------------------
                                                                                   

consensus_11963#0      TCTCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCGCCGGATTCTCG 120
consensus_11963#1      ------------------------------------------------------------
                                                                                   

consensus_11963#0      GCCTCCTCTCCACGACGGATTCTCCCGGCACCTCGCGCGAGCGGCGGCGGCGGCGGCGGG 180
consensus_11963#1      ------------------------------------------------------------
                                                                                   

consensus_11963#0      GAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCA 240
consensus_11963#1      ------------------------------------------------------------
                                                                                   

consensus_11963#0      GGAGCAGCGCAGGAATCCGAATGGCTGAGGGAAACACTGCACAAGTGGCTCGACGACGAG 300
consensus_11963#1      ------------------------------------------------------------
                                                                                   

consensus_11963#0      TACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCATTCTACGAG 360
consensus_11963#1      ------------------------------------------------------------
                                                                                   

consensus_11963#0      TCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTG 420
consensus_11963#1      ------------------------------------------------------------
                                                                                   

consensus_11963#0      CAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTG 480
consensus_11963#1      ------------------------------------------------------------
                                                                                   

consensus_11963#0      AGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGC 540
consensus_11963#1      ------------------------------------------------------------
                                                                                   

consensus_11963#0      TAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTA 600
consensus_11963#1      ------------------------------------------------------------
                                                                                   

consensus_11963#0      CTGAATTGAGTTCATCAGGTTTCTTTGT------GTGCCTGGGCGGGCGCTTGGTTGAGA 654
consensus_11963#1      ---------------CAGGCTTCTTTGTTCATGGGTGCCTGGGCGGGTGCTTGGTTGAGA 45
                                      **** ********      ************* ************

consensus_11963#0      AAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATG 714
consensus_11963#1      AAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCTAAAGATACAC- 104
                       ************************************************ * **  ***  

consensus_11963#0      CGATTTTGAGTAAAATACGCTAATGGTTCTTAAACTTAAAAAAA 758
consensus_11963#1      TGATCCA----AAAATTTGCCTCTTGTTTGCAAC---------- 134
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