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Oryza sativa
cluster # 11965 cluster # 11965       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11965#0 length = 1816 sequences # 4  
consensus_11965#1 length = 1650 sequences # 5  

consensusID : consensus_11965#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1816
fasta sequence
                              [CGGATTACAAGAGAAGAGAGCAGCGTGACATGGGAAGCAATGACCACCGGAACGTAGCTCTCGCCGTTGACCGTGTCCGGGTCCTGTCCCGACGCCTCGTCCGGCCGTCGTCGTCGTCGTCGTCGTCGTCGTCCGGTCACGCGCCGCCGTGCGACATCCACCTCACGCCGTGGGACCTCCGCTTCCTCAGCATCGACTACATCCAGAAGGGCGTCCTCCTGCCCAAGCCGCCGCTCTCCGGCGACCGCCTCGCCGACGCCCTCGCGTCCTCCTTCGCGCGCGCCCTCGCGCTGTTCTACCCGTTCGCCGGCCGTCTCGTCGCCGAGGAGCGCGCCGACGACGGGACCGTCACCGTCGCGCTGCGGTGCACCGGCGAGGGCGCCGAGTTCGTCCACGCGGCGGCGCCCGGCGTGGCCGTGTCCGACGTCGTCTCGTCGCTTTACACGCCGCCGGAGGTATGGTCGTTCTACTCGTACAACCTGGTGCTCGGCGCCGACGCCGCCACCGAGTCGCGGCCCGTGCTGTCGACGCAGGTCACCGAGCTCGCCGACGGCGTGTTCGTCGGCATGTCGCTGAACCACTCCGTCGGCGACGGCACCACCTTCTGGAAGTTCATGAACGCATGGTCGGAGATCAACCGCCGCGCTGGCGGCGCCATGAGCGACGACCTGATGATCAGAGAGATCTCCACGCCGGCGCCGGTGTTCCGGCGGTGGTTCGTCGAGACCAGCCCGGTGCCGATCCCCATGCCGGTCGGCAAGCTGCAGCACATCGTCCGACGGCTCGAGCGGCCGGAAGTGCAGGAATGCTTCTTCACCTTCTCGGCAACGAGCGCCCGGAAGCTCAAGGCGAAGGCGAACGACGAGATGTCCGGCGCGGCCACGTCAACCATCTCGTCGCTCCAGGCCGTGCTCGCCCACCTGTGGCGAGGTGTGTGCCGCGCCCGGCGACTCCCGCCGGAGCAGGTGACGTTCTACACGGTGATGGTGGGATGCCGGGGGCGCGTGAACGGCATCCCGGCGGGGTACGTCGGGAACGCGCTGATGTTCGGGAAGGCGGAGGCGACGGCCGGCGAGATCGAGGAGAAGGGGCTCGGGTGGACGGCATGGCAGCTGAACCGCGCCGTGGCGTCGTTCGACGAGGCCGGCATGAGGGAGTCGCTGGAGCGGTGGGTGCGGGAGCCGGAGTTCACGTACATGTCGAAGCTGCAATCCGGCGATGCCGGCGGCGTGGCGCTGATCACGGGGAGCTCGCCGCGGTTCGACGTGTTCGGCAACGACTTCGGGTGGGGAAGGCCGGTGGCGGTGAGGAGCGGCGCCGGGAACAAGATCGACGGGAAGGCGACGGTGTTCGAGGGCCCGGACGGCGCCGGGAGCATGTCGCTCGAGGTTTGCATCGCGCCGGACGCGCTCCGGAGGCTCGTCGCCGACGAGGAGTTCATGGACGCCGTCACCCTCCCCTCATCGTGATTAAACTTCATTGCTCTACCAAAATATGGTGCTCTTTAGGGAAATATATTAATTTCGGCTTTAGCCCAATCAACAAAGATGTGACGAGAAGATGTAATCCATTCCTCTTGCATGCAAAATCATGGATACAATGGTCATATCAATTTTCGTTAACTTTGGATGAATATTTACTGATAGGATTACTATCTGAATAATTTGTTTGTTGGTGGAGTTAATATTTGTCTTATTTTCCATCCTATGTTAGTTACATTTTATTTGGATTTGCGCAAACAATTTTGTGATAATTAATTGGTTGTAATTTCTGTTGAAGGAAAGGACAGATTTTATCTATTGTCTAGCAATAGATA]

[+] EMBL AK110905             [CGGATTACAAGAGAAGAGAGCAGCGTGACATGGGAAGCAATGACCACCGGAACGTAGCTCTCGCCGTTGACCGTGTCCGGGTCCTGTCCCGACGCCTCGTCCGGCCGTCGTCGTCGTCGTCGTCGTCGTCGTCCGGTCACGCGCCGCCGTGCGACATCCACCTCACGCCGTGGGACCTCCGCTTCCTCAGCATCGACTACATCCAGAAGGGCGTCCTCCTGCCCAAGCCGCCGCTCTCCGGCGACCGCCTCGCCGACGCCCTCGCGTCCTCCTTCGCGCGCGCCCTCGCGCTGTTCTACCCGTTCGCCGGCCGTCTCGTCGCCGAGGAGCGCGCCGACGACGGGACCGTCACCGTCGCGCTGCGGTGCACCGGCGAGGGCGCCGAGTTCGTCCACGCGGCGGCGCCCGGCGTGGCCGTGTCCGACGTCGTCTCGTCGCTTTACACGCCGCCGGAGGTATGGTCGTTCTACTCGTACAACCTGGTGCTCGGCGCCGACGCCGCCACCGAGTCGCGGCCCGTGCTGTCGACGCAGGTCACCGAGCTCGCCGACGGCGTGTTCGTCGGCATGTCGCTGAACCACTCCGTCGGCGACGGCACCACCTTCTGGAAGTTCATGAACGCATGGTCGGAGATCAACCGCCGCGCTGGCGGCGCCATGAGCGACGACCTGATGATCAGAGAGATCTCCACGCCGGCGCCGGTGTTCCGGCGGTGGTTCGTCGAGACCAGCCCGGTGCCGATCCCCATGCCGGTCGGCAAGCTGCAGCACATCGTCCGACGGCTCGAGCGGCCGGAAGTGCAGGAATGCTTCTTCACCTTCTCGGCAACGAGCGCCCGGAAGCTCAAGGCGAAGGCGAACGACGAGATGTCCGGCGCGGCCACGTCAACCATCTCGTCGCTCCAGGCCGTGCTCGCCCACCTGTGGCGAGGTGTGTGCCGCGCCCGGCGACTCCCGCCGGAGCAGGTGACGTTCTACACGGTGATGGTGGGATGCCGGGGGCGCGTGAACGGCATCCCGGCGGGGTACGTCGGGAACGCGCTGATGTTCGGGAAGGCGGAGGCGACGGCCGGCGAGATCGAGGAGAAGGGGCTCGGGTGGACGGCATGGCAGCTGAACCGCGCCGTGGCGTCGTTCGACGAGGCCGGCATGAGGGAGTCGCTGGAGCGGTGGGTGCGGGAGCCGGAGTTCACGTACATGTCGAAGCTGCAATCCGGCGATGCCGGCGGCGTGGCGCTGATCACGGGGAGCTCGCCGCGGTTCGACGTGTTCGGCAACGACTTCGGGTGGGGAAGGCCGGTGGCGGTGAGGAGCGGCGCCGGGAACAAGATCGACGGGAAGGCGACGGTGTTCGAGGGCCCGGACGGCGCCGGGAGCATGTCGCTCGAGGTTTGCATCGCGCCGGACGCGCTCCGGAGGCTCGTCGCCGACGAGGAGTTCATGGACGCCGTCACCCTCCCCTCATCGTGATTAAACTTCATTGCTCTACCAAAATATGGTGCTCTTTAGGGAAATATATTAATTTCGGCTTTAGCCCAATCAACAAAGATGTGACGAGAAGATGTAATCCATTCCTCTTGCATGCAAAATCATGGATACAATGGTCATATCAATTTTCGTTAACTTTGGATGAATATTTACTGATAGGATTACTATCTGAATAATTTGTTTGTTGGTGGAGTTAATATTTGTCTTATTTTCCATCCTATGTTAGTTACATTTTATTTGGATTTGCGCAAACAATTTTGTGATAATTAATTGGTTGTAATTTCTGTTGAAGGAAAGGACAGATTTTATCTATTGTCTAGCAATAGATA]
[+] EMBL CB637859             [                         TGACATGGGAAGCAATGACCACCGGAACGTAGCTCTCGCCGTTGACCGTGTCCGGGTCCTGTCCCGACGCCTCGTCCGGCCGTCGTCGTCGTCGTCGTCGTCATCGTCCGGTCACGCGCCGCCGTGCGACATCCACCTCACGCCGTGGGACCTCCGCTTCCTCAGCATCGACTACATCCAGAAGGGCGTCCTCCTGCCCAAGCCGCCGCTCTCCGGCGACCGCCTCGCCGACGCCCTCGCGTCCTCCTTCGCGCGCGCCCTCGCGCTGTTCTACCCGTTCGCCGGCCGTCTCGTCGCCGAGGAGCGCGCCGACGACGGGACCGTCACCGTCGCGCTGCGGTGCACCGGCGAGGGCGCCGAGTTCGTCCACGCGGCGGCGCCCGGCGTGGCCGTGTCCGACGTCGTCTCGTtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CA755198             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGTCAACCATCTCGTCGCTCCAGGCCGTGCTCGCCCACCTGTGGCGAGGTGTGTGCCGCGCCCGGCGACTCCCGCCGGAGCAGGTGACGTTCTACACGGTGATGGTGGGATGCCGGGGGCGCGTGAACGGCATCCCGGCGGGGTACGTCGGGAACGCGCTGATGTTCGGGAAGGCGGAGGCGACGGCCGGCGAGATCGAGGAGAAGGGGCTCGGGTGGACGGCATGGCAGCTGAACCGCGCCGTGGCGTCGTTCGACGAGGCCGGCGTGAGGGAGTCGCTGGAGCGGTGGGTGCGGGAGCCGGAGTTCACGTACATGTCGAAGCTGCAATCCGGCGATGCCGGCGGCGTGGCGCTGATCACGGGGAGCTCGCCGCGGTTCGACGTGTTCGGCAACGACTTCGGGTGGGGAAGGCCGGTGGCGGTGAGGAGCGGCGCCGGGAACAAGATCGACGGGAAGGCGACGGTGTTCGAGGGCCCGGACGGCGCCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB637860             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGGCGCCGGGAGCATGTCGCTCGAGGTTTGCATCGCGCCGGACGCGCTCCGGAGGCTCGTCGCCGACGAGGAGTTCATGGACGCCGTCACCCTCCCCTCATCGTGATTAAACTTCATTGCTCTACCAAAATATGGTGCTCTTTAGGGAAATATATTAATTTCGGCTTTAGCCCAATCAACAAAGATGTGACGAGAAGATGTAATCCATTCCTCTTGCATGCAAAATCATGGATACAATGGTCATATCAATTTTCGTTAACTTTGGATGAATATTTACTGATAGGATTACTATCTGAATAATTTGTTTGTTGGTGAAAAAAATATTTGTCTTATTTTCCATCCTATGTTAGTTACATTTTATTTGGATTTGCGCAAACAATTTTGTGATAATTAATTGGTTGTAA                                                 ]


>consensus_11965#0 CGGATTACAAGAGAAGAGAGCAGCGTGACATGGGAAGCAATGACCACCGGAACGTAGCTC TCGCCGTTGACCGTGTCCGGGTCCTGTCCCGACGCCTCGTCCGGCCGTCGTCGTCGTCGT CGTCGTCGTCGTCCGGTCACGCGCCGCCGTGCGACATCCACCTCACGCCGTGGGACCTCC GCTTCCTCAGCATCGACTACATCCAGAAGGGCGTCCTCCTGCCCAAGCCGCCGCTCTCCG GCGACCGCCTCGCCGACGCCCTCGCGTCCTCCTTCGCGCGCGCCCTCGCGCTGTTCTACC CGTTCGCCGGCCGTCTCGTCGCCGAGGAGCGCGCCGACGACGGGACCGTCACCGTCGCGC TGCGGTGCACCGGCGAGGGCGCCGAGTTCGTCCACGCGGCGGCGCCCGGCGTGGCCGTGT CCGACGTCGTCTCGTCGCTTTACACGCCGCCGGAGGTATGGTCGTTCTACTCGTACAACC TGGTGCTCGGCGCCGACGCCGCCACCGAGTCGCGGCCCGTGCTGTCGACGCAGGTCACCG AGCTCGCCGACGGCGTGTTCGTCGGCATGTCGCTGAACCACTCCGTCGGCGACGGCACCA CCTTCTGGAAGTTCATGAACGCATGGTCGGAGATCAACCGCCGCGCTGGCGGCGCCATGA GCGACGACCTGATGATCAGAGAGATCTCCACGCCGGCGCCGGTGTTCCGGCGGTGGTTCG TCGAGACCAGCCCGGTGCCGATCCCCATGCCGGTCGGCAAGCTGCAGCACATCGTCCGAC GGCTCGAGCGGCCGGAAGTGCAGGAATGCTTCTTCACCTTCTCGGCAACGAGCGCCCGGA AGCTCAAGGCGAAGGCGAACGACGAGATGTCCGGCGCGGCCACGTCAACCATCTCGTCGC TCCAGGCCGTGCTCGCCCACCTGTGGCGAGGTGTGTGCCGCGCCCGGCGACTCCCGCCGG AGCAGGTGACGTTCTACACGGTGATGGTGGGATGCCGGGGGCGCGTGAACGGCATCCCGG CGGGGTACGTCGGGAACGCGCTGATGTTCGGGAAGGCGGAGGCGACGGCCGGCGAGATCG AGGAGAAGGGGCTCGGGTGGACGGCATGGCAGCTGAACCGCGCCGTGGCGTCGTTCGACG AGGCCGGCATGAGGGAGTCGCTGGAGCGGTGGGTGCGGGAGCCGGAGTTCACGTACATGT CGAAGCTGCAATCCGGCGATGCCGGCGGCGTGGCGCTGATCACGGGGAGCTCGCCGCGGT TCGACGTGTTCGGCAACGACTTCGGGTGGGGAAGGCCGGTGGCGGTGAGGAGCGGCGCCG GGAACAAGATCGACGGGAAGGCGACGGTGTTCGAGGGCCCGGACGGCGCCGGGAGCATGT CGCTCGAGGTTTGCATCGCGCCGGACGCGCTCCGGAGGCTCGTCGCCGACGAGGAGTTCA TGGACGCCGTCACCCTCCCCTCATCGTGATTAAACTTCATTGCTCTACCAAAATATGGTG CTCTTTAGGGAAATATATTAATTTCGGCTTTAGCCCAATCAACAAAGATGTGACGAGAAG ATGTAATCCATTCCTCTTGCATGCAAAATCATGGATACAATGGTCATATCAATTTTCGTT AACTTTGGATGAATATTTACTGATAGGATTACTATCTGAATAATTTGTTTGTTGGTGGAG TTAATATTTGTCTTATTTTCCATCCTATGTTAGTTACATTTTATTTGGATTTGCGCAAAC AATTTTGTGATAATTAATTGGTTGTAATTTCTGTTGAAGGAAAGGACAGATTTTATCTAT TGTCTAGCAATAGATA



consensusID : consensus_11965#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1650
fasta sequence
                              [ATGGAAGCCAACACCGGCGGCGGCGGCGGCGTCCTCGTCGTGTCACGCCGCA-TGATCCGGCCGGAGTTCAAGGAGCTGCCGCCGGAGCATGATACGACGGTTCACCTTACGCCGTGGGATCTCCGGCTGCTCACCGTGGAGAACATCCAGAAGGGCATCCTCCTTCCCAAGCCACCCACCGGCGGCGAGACTCTCGTCGAACACCTGGCGTCGTCGTTCGCTCGCGCACTCGGCCGCTTCTACCCCTTCGCCGGCCGCCTCGTCGTGGAAGAGGTGGATGGCGGAGCGTCGCCTGCGAGCAGCGTATCTGTCTCGCTGCGCTGCAACGACGAAGGCGC-TGAG-TTCGTCCACGCCGCGGCGCCCGACGTCGCCGTCGCCGACATCGCCGCCTCGCTGCACATTCCACGCGTGGTCTGGTCCTTCTTCCCGCTCAATGGAGTGGTTGCTGCACACGCCGCGACGGAATCCCTGCCGGTTCTGTCCACGCAGGTCACCGAGCTCTCTGACGGCGTGTTCATCGCCATGTCTGTCAACCACGTCGTCGGCGACGGCACCAATTTCTGGGAGTTCATGAACACATGGTCGGAGATCAGTCGAAGTAGCGGCGGCGAACTGGGCATCTCGCCATCGGCGTCGACGTCGACTTCGCCGCCTCTGGTGGTCAAGAGGTGGTTCTTGGACAACTGCACGGTGCCGATCCCTCTGCCGTTCGCCAAGCTCGAGCAGATCATCCCGCGAAGCGAGCACCAAGCGCCGGTGCAGGAATGCTTCTTCGCTTTCTCCGCGGCGAGCATAAGGAAGCTGAAGGCGAAGGCGAACGACGAGATCGCCGGCGCCGCCGTCGCCATCTCCTCCCTCCAGGTGCTGCTCGCGCTCGTGTGGCGCGCGGTTTCGCGAGCCCGCGGCCTCGCGCCGCGCCAGGAGACGGCGTACGTGGTGGTCGTCGGGTGCCGGGGACGCGTGGGCGGCATCTCGTCGGGGTACATGGGGAACGCCGTGGTGCCCGGCGCGGTGAGGCTGACGGCCGGCGAGATCATGGAGAGGGGGCTCGGGTGGACGGCGTGGCAGCTGAACAAGTACGTGGCGTCGTTCGACGAGGCGGCCATGAGGGGCGCGCTGGCGTCGTGGCCGCGGCGGCCGGACTTCTTCTCCGTCCTGAGCCTGCTCGGCGGCGCCGCCATCATCACGGGGAGCTCGCCGCGGTTCGACGTGTTCGGCAACGACTTCGGGTGGGGGAGGCCGGCGACCGTGCGGAGCGGCGGCGCGAACAAGTTCGACGGGAAGGTGACGGTGTACGAGGGGCCGGACGGCGCCGGGAGCATGTCGCTGGAGGTTTGCCTGACTCCGGCGGCGCTGGCGAAGCTCGTCGCCGACGAGGAGTTCATGGGCGCGGTGACCACGCCATGAGTTGCATCCA-TGCATGCTTCTATTCA-TTGCGATTTGCGAGCTCAATTGGTTAAAAAAAAA-ACATTCACATCGACATCATGTAATCCATTTATGTCA-ATTTGTCAGTAGAAAGGTGATGAATTCATCAACAGCTATAGCTGATAGATCA-GAGATATCA-CTGGATTACCTTTTGTATCAAACAAGGATA-AATCAATATGTTTGTGAAGTGAAATTTCGAATGGTTTTTAGCCGCCAAAAAAAAAA]

[+] EMBL AK070381             [ATGGAAGCCAACACCGGCGGCGGCGGCGGCGTCCTCGTCGTGTCACGCCGCA TGATCCGGCCGGAGTTCAAGGAGCTGCCGCCGGAGCATGATACGACGGTTCACCTTACGCCGTGGGATCTCCGGCTGCTCACCGTGGAGAACATCCAGAAGGGCATCCTCCTTCCCAAGCCACCCACCGGCGGCGAGACTCTCGTCGAACACCTGGCGTCGTCGTTCGCTCGCGCACTCGGCCGCTTCTACCCCTTCGCCGGCCGCCTCGTCGTGGAAGAGGTGGATGGCGGAGCGTCGCCTGCGAGCAGCGTATCTGTCTCGCTGCGCTGCAACGACGAAGGCGC TGAG TTCGTCCACGCCGCGGCGCCCGACGTCGCCGTCGCCGACATCGCCGCCTCGCTGCACATTCCACGCGTGGTCTGGTCCTTCTTCCCGCTCAATGGAGTGGTTGCTGCACACGCCGCGACGGAATCCCTGCCGGTTCTGTCCACGCAGGTCACCGAGCTCTCTGACGGCGTGTTCATCGCCATGTCTGTCAACCACGTCGTCGGCGACGGCACCAATTTCTGGGAGTTCATGAACACATGGTCGGAGATCAGTCGAAGTAGCGGCGGCGAACTGGGCATCTCGCCATCGGCGTCGACGTCGACTTCGCCGCCTCTGGTGGTCAAGAGGTGGTTCTTGGACAACTGCACGGTGCCGATCCCTCTGCCGTTCGCCAAGCTCGAGCAGATCATCCCGCGAAGCGAGCACCAAGCGCCGGTGCAGGAATGCTTCTTCGCTTTCTCCGCGGCGAGCATAAGGAAGCTGAAGGCGAAGGCGAACGACGAGATCGCCGGCGCCGCCGTCGCCATCTCCTCCCTCCAGGTGCTGCTCGCGCTCGTGTGGCGCGCGGTTTCGCGAGCCCGCGGCCTCGCGCCGCGCCAGGAGACGGCGTACGTGGTGGTCGTCGGGTGCCGGGGACGCGTGGGCGGCATCTCGTCGGGGTACATGGGGAACGCCGTGGTGCCCGGCGCGGTGAGGCTGACGGCCGGCGAGATCATGGAGAGGGGGCTCGGGTGGACGGCGTGGCAGCTGAACAAGTACGTGGCGTCGTTCGACGAGGCGGCCATGAGGGGCGCGCTGGCGTCGTGGCCGCGGCGGCCGGACTTCTTCTCCGTCCTGAGCCTGCTCGGCGGCGCCGCCATCATCACGGGGAGCTCGCCGCGGTTCGACGTGTTCGGCAACGACTTCGGGTGGGGGAGGCCGGCGACCGTGCGGAGCGGCGGCGCGAACAAGTTCGACGGGAAGGTGACGGTGTACGAGGGGCCGGACGGCGCCGGGAGCATGTCGCTGGAGGTTTGCCTGACTCCGGCGGCGCTGGCGAAGCTCGTCGCCGACGAGGAGTTCATGGGCGCGGTGACCACGCCATGAGTTGCATCCA TGCATGCTTCTATTCA TTGCGATTTGCGAGCTCAATTGGTTAAAAAAAAA ACATTCACATCGACATCATGTAATCCATTTATGTCA ATTTGTCAGTAGAAAGGTGATGAATTCATCAACAGCTATAGCTGATAGATCA GAGATATCA CTGGATTACCTTTTGTATCAAACAAGGATA AATCAATATGT                                             ]
[+] EMBL C26261               [                   GCGGCGGCGGCGTCCTCGTCGTGTCACGCCGCANTGATCCGGCCGGAGTTCAAGGAGCTGCCGCCGGAGCATGATACGACGGTTCACCTTACGCCGTGGGATCTCCGGCTGCTCACCGTGGAGAACATCCAGAAGGGCATCCTCCTTCCCAAGCCACCCACCGGCGGCGAGACTCTCGTCGAACACCTGGCGTCGTCGTTCGCTCGCGCACTCGGCCGCTTCTACCCCTTCGCCGGCCGCCTCGTCGTGGAAGAGGTGGATGGCGGAGGTTCGCCTGCGAGCAGCGTATCTGTCTCGCTGCGCTGCAACGACGAAGG GCTTGAGTTTCGTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB641655             [                                                                                                                               CTGCTCACCGTGGAGAACATCCAGAAGGGCATCCTCCTTCCCAAGCCACCCACCGGCGGCGAGACTCTCGTCGAACACCTGGCGTCGTCGTTCGCTCGCGCACTCGGCCGCTTCTACCCCTTCGCCGGCCGCCTCGTCGTGGAAGAGGTGGATGGCGGAGCGTCGCCTGCGAGCAGCGTATCTGTCTCGCTGCGCTGCAACGACGAAGGCGC TGAG TTCGTCCACGCCGCGGCGCCCGACGTCGCCGTCGCCGACATCGCCGCCTCGCTGCACATTCCACGCGTGGTCTGGTCCTTCTTCCCGCTCAATGGAGTGGTTGCTGCACACGCCGCGACGGAATCCCTGCCGGTTCTGTCCACGCAGGTCACCGAGCTCTCTGACGGCGTGTTCATCGCCATGTCTGTCAACCACGTCGTCGGCGACGGCACCAATTTCTGGGAGTTCATGAACACATGGTCGGAGATCAGTCGAAGTAGCGGCGGCGAACTGGGCATCTCGCCATCGGCGTCGACGTCGACTTCGCCGCCTCTGGTGGTCAAGAGGTGGTTCTTGGACAACTGCACGGTGCCGATCCCTCTGCCGTTCGCCAAGCTCGAGCAGATCATCCCGCGAAGCGAGCACCAAGCGCCGGTGCAGGAATGCTTCTTCGCTTTCTCCGCGGCGAGCATAAGGAAGCTGAAGGCGAAGGCGAACGACGAGATCGCCGGCGCCGCCGTCGCCATCTCCTCCCTCCAGGTGCTGCTCGCGCTCGTGTGGCGCGCGGTTTCGCGAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB641656             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCGGTTTCGNGAGCCCGCGGCCTCGCGCCGCGCCAGGAGACGGCGTACGTGGTGGTCGTCGGGTGCCGGGGACGCGTGGGCGGCATCTCGTCGGGGTACATGGGGAACGCCGTGGTGCCCGGCGCGGTGAGGCTGACGGCCGGCGAGATCATGGAGAGGGGGCTCGGGTGGACGGCGTGGCAGCTGAACAAGTACGTGGCGTCGTTCGACGAGGCGGCCATGAGGGGCGCGCTGGCGTCGTGGCCGCGGCGGCCGGACTTCTTCTCCGTCCTGAGCCTGCTCGGCGGCGCCGCCATCATCACGGGGAGCTCGCCGCGGTTCGACGTGTTCGGCAACGACTTCGGGTGGGGGAGGCCGGCGACCGTGCGGAGCGGCGGCGCGAACAAGTTCGACGGGAAGGTGACGGTGTACGAGGGGCCGGACGGCGCCGGGAGCATGTCGCTGGAGGTTTGCCTGACTCCGGCGGCGCTGGCGAAGCTCGTCGCCGACGAGGAGTTCATGGGCGCGGTGACCACGCCATGAGTTGCATCCA TGCATGCTTCTATTCA TTGCGATTTGCGAGCTCAATTGGTT AAAAAAAA ACATTCACATCGACATCATGTAATCCATTTATGTCA ATTTGTCAGTAGAAAGGTGATGAATTCATCAACAGCTATAGCTGATAGATCA GAGATATCA CTGGATTACCTTTTGTATCAAACAAGGATANAATCAATATGTT                                            ]
[+] EMBL BM421764             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGACTTCTTCTCCGTCCTGAGCCTGCTC    GCGCCCCCATCATCACGGGGAGCTC CCCCGGTTCGACGTGTTCGGCAACGACTTCGGGTGGGGGA GCCGGCGACCGTGCGGAGCGGCGGCGCGAACCAGTTCGACGGGAAGGTGACGGTGTACGAGGGGCCGGACGGCGCCGGGAGCATGTCGCTGGAGGTTTGCCTGACTCCGGCGGCGCTGGCGAAGCTCGTCGCCGACGAGGAGTTCATGGGCGCGGTGACCACGCCATGAGTTGCATCCAGTGCATGCTTCTATTCANTTGCGATTTGCAAGCTCCATTGGTTAAAAAAAAACAC TTCACATCGACATCATGTAATCCCTTTATGTCACAGTTGTCAGTAGAAAGGTGATGAATTCATC ACAGCTATAGCTGATAGATCACGAGATATCACCTGGATTACCTTTTGTATCCAACCAGGATA AATCCATATGTTTGTGAAGTGAAATTTCGAATGGTTTTTAGCCGCCAAAAAAAAAA]


>consensus_11965#1 ATGGAAGCCAACACCGGCGGCGGCGGCGGCGTCCTCGTCGTGTCACGCCGCATGATCCGG CCGGAGTTCAAGGAGCTGCCGCCGGAGCATGATACGACGGTTCACCTTACGCCGTGGGAT CTCCGGCTGCTCACCGTGGAGAACATCCAGAAGGGCATCCTCCTTCCCAAGCCACCCACC GGCGGCGAGACTCTCGTCGAACACCTGGCGTCGTCGTTCGCTCGCGCACTCGGCCGCTTC TACCCCTTCGCCGGCCGCCTCGTCGTGGAAGAGGTGGATGGCGGAGCGTCGCCTGCGAGC AGCGTATCTGTCTCGCTGCGCTGCAACGACGAAGGCGCTGAGTTCGTCCACGCCGCGGCG CCCGACGTCGCCGTCGCCGACATCGCCGCCTCGCTGCACATTCCACGCGTGGTCTGGTCC TTCTTCCCGCTCAATGGAGTGGTTGCTGCACACGCCGCGACGGAATCCCTGCCGGTTCTG TCCACGCAGGTCACCGAGCTCTCTGACGGCGTGTTCATCGCCATGTCTGTCAACCACGTC GTCGGCGACGGCACCAATTTCTGGGAGTTCATGAACACATGGTCGGAGATCAGTCGAAGT AGCGGCGGCGAACTGGGCATCTCGCCATCGGCGTCGACGTCGACTTCGCCGCCTCTGGTG GTCAAGAGGTGGTTCTTGGACAACTGCACGGTGCCGATCCCTCTGCCGTTCGCCAAGCTC GAGCAGATCATCCCGCGAAGCGAGCACCAAGCGCCGGTGCAGGAATGCTTCTTCGCTTTC TCCGCGGCGAGCATAAGGAAGCTGAAGGCGAAGGCGAACGACGAGATCGCCGGCGCCGCC GTCGCCATCTCCTCCCTCCAGGTGCTGCTCGCGCTCGTGTGGCGCGCGGTTTCGCGAGCC CGCGGCCTCGCGCCGCGCCAGGAGACGGCGTACGTGGTGGTCGTCGGGTGCCGGGGACGC GTGGGCGGCATCTCGTCGGGGTACATGGGGAACGCCGTGGTGCCCGGCGCGGTGAGGCTG ACGGCCGGCGAGATCATGGAGAGGGGGCTCGGGTGGACGGCGTGGCAGCTGAACAAGTAC GTGGCGTCGTTCGACGAGGCGGCCATGAGGGGCGCGCTGGCGTCGTGGCCGCGGCGGCCG GACTTCTTCTCCGTCCTGAGCCTGCTCGGCGGCGCCGCCATCATCACGGGGAGCTCGCCG CGGTTCGACGTGTTCGGCAACGACTTCGGGTGGGGGAGGCCGGCGACCGTGCGGAGCGGC GGCGCGAACAAGTTCGACGGGAAGGTGACGGTGTACGAGGGGCCGGACGGCGCCGGGAGC ATGTCGCTGGAGGTTTGCCTGACTCCGGCGGCGCTGGCGAAGCTCGTCGCCGACGAGGAG TTCATGGGCGCGGTGACCACGCCATGAGTTGCATCCATGCATGCTTCTATTCATTGCGAT TTGCGAGCTCAATTGGTTAAAAAAAAAACATTCACATCGACATCATGTAATCCATTTATG TCAATTTGTCAGTAGAAAGGTGATGAATTCATCAACAGCTATAGCTGATAGATCAGAGAT ATCACTGGATTACCTTTTGTATCAAACAAGGATAAATCAATATGTTTGTGAAGTGAAATT TCGAATGGTTTTTAGCCGCCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11965#0      CGGATTACAAGAGAAGAGAGCAGCGTGACATGGGAAGCAATGACCACCGGAACGTAGCTC 60
consensus_11965#1      ----------------------------------------------ATGGAAGCCAACAC 14
                                                                       ****   * * *

consensus_11965#0      TCGC--CGTTGACCGTGTCCGGGTCCTGTCCCGACGCCTCGTCCGGCCGTCGTCGTCGTC 118
consensus_11965#1      CGGCGGCGGCGGCGGCGTCCTCGTCGTGTCACGCCGCATGATCCGGCCGGAGTTCAAGGA 74
                         **  **  * * * ****  *** **** ** *** *  ********  **    *  

consensus_11965#0      GTCGTCGTCGTCGTCCGGTCACGCGCCGCCGTGCGACATCCACCTCACGCCGTGGGACCT 178
consensus_11965#1      GCTGCCGCCG------GAGCATGATACGACG------GTTCACCTTACGCCGTGGGATCT 122
                       *  * ** **      *  ** *   ** **       * ***** *********** **

consensus_11965#0      CCGCTTCCTCAGCATCGACTACATCCAGAAGGGCGTCCTCCTGCCCAAGCCGCCGCTCTC 238
consensus_11965#1      CCGGCTGCTCACCGTGGAGAACATCCAGAAGGGCATCCTCCTTCCCAAGCCACCCACCGG 182
                       ***  * **** * * **  ************** ******* ******** **   *  

consensus_11965#0      CGGCGACCGCCTCGCCGACGCCCTCGCGTCCTCCTTCGCGCGCGCCCTCGCGCTGTTCTA 298
consensus_11965#1      CGGCGAGACTCTCGTCGAACACCTGGCGTCGTCGTTCGCTCGCGCACTCGGCCGCTTCTA 242
                       ******    **** ***   *** ***** ** ***** ***** ****  *  *****

consensus_11965#0      CCCGTTCGCCGGCCGTCTCGTCGCCGAGGAGC-----------GCGCCGACGACGGG-AC 346
consensus_11965#1      CCCCTTCGCCGGCCGCCTCGTCGTGGAAGAGGTGGATGGCGGAGCGTCGCCTGCGAGCAG 302
                       *** *********** *******  ** ***            *** ** *  ** * * 

consensus_11965#0      CGTCACCGTCGCGCTGCGGTGCACCGGCGAGGGCGCCGAGTTCGTCCACGCGGCGGCGCC 406
consensus_11965#1      CGTATCTGTCTCGCTGCGCTGCAACGACGAAGGCGCTGAGTTCGTCCACGCCGCGGCGCC 362
                       ***  * *** ******* **** ** *** ***** ************** ********

consensus_11965#0      CGGCGTGGCCGTGTCCGACGTCGTCTCGTCGCTTTACACGCCGCCGGAGGTATGGTCGTT 466
consensus_11965#1      CGACGTCGCCGTCGCCGACATCGCCGCCTCGCTGCACATTCCACGCGTGGTCTGGTCCTT 422
                       ** *** *****  ***** *** * * *****  ***  ** *  * *** ***** **

consensus_11965#0      CTACTCGTACAACCTGGTGCTCGGCGCCGACGCCGCCACCGAGTCGCGGCCCGTGCTGTC 526
consensus_11965#1      CTTCCCGCTCAATGGAGTGGTTGCTGCACACGCCGCGACGGAATCCCTGCCGGTTCTGTC 482
                       ** * **  ***    *** * *  **  ******* ** ** ** * *** ** *****

consensus_11965#0      GACGCAGGTCACCGAGCTCGCCGACGGCGTGTTCGTCGGCATGTCGCTGAACCACTCCGT 586
consensus_11965#1      CACGCAGGTCACCGAGCTCTCTGACGGCGTGTTCATCGCCATGTCTGTCAACCACGTCGT 542
                        ****************** * ************ *** ******  * ******  ***

consensus_11965#0      CGGCGACGGCACCACCTTCTGGAAGTTCATGAACGCATGGTCGGAGATCAACCGCCGCGC 646
consensus_11965#1      CGGCGACGGCACCAATTTCTGGGAGTTCATGAACACATGGTCGGAGATCAGTCGAAGTAG 602
                       **************  ****** *********** ***************  **  *   

consensus_11965#0      TGGCGGCGCCATGAGCGACGACCTGATGATCAGAGAGATCTCCACGCCGGCGCCGGTGTT 706
consensus_11965#1      CGGCGGCGAACTGGGCATCTCGCCATCGGCGTCGACGTCGACTTCGCCGCCTCTGGTGGT 662
                        *******   ** **  *   *    *        *    *  ***** * * **** *

consensus_11965#0      CCGGCGGTGGTTCGTCGAGACCAGCCCGGTGCCGATCCCCATGCCGGTCGGCAAGCTGCA 766
consensus_11965#1      CAAGAGGTGGTTCTTGGACAACTGCACGGTGCCGATCCCTCTGCCGTTCGCCAAGCTCGA 722
                       *  * ******** * ** * * ** *************  ***** *** ******  *

consensus_11965#0      GCACATCGTCCGACGGCTCGAGCGGC---CGGAAGTGCAGGAATGCTTCTTCACCTTCTC 823
consensus_11965#1      GCAGATCATCCCGCGAAGCGAGCACCAAGCGCCGGTGCAGGAATGCTTCTTCGCTTTCTC 782
                       *** *** ***  **   *****  *   **   ****************** * *****

consensus_11965#0      GGCAACGAGCGCCCGGAAGCTCAAGGCGAAGGCGAACGACGAGATGTCCGGCGCGGCCAC 883
consensus_11965#1      CGCGGCGAGCATAAGGAAGCTGAAGGCGAAGGCGAACGACGAGATCGCCGGCGCCGC--C 840
                        **  *****    ******* ***********************  ******* **  *

consensus_11965#0      GTCAACCATCTCGTCGCTCCAGGCCGTGCTCGCCCACCTGTGGCGAGGTGTGTGCCGCGC 943
consensus_11965#1      GTCG-CCATCTCCTCCCTCCAGGTGCTGCTCGCGCTCGTGTGGCGCGCGGTTTCGCGAGC 899
                       ***  ******* ** *******   ******* * * ******* *  ** *  ** **

consensus_11965#0      CCGGCGACTCCCGCCGGAGCAGGTGACGTTCTACACGGTGATGGTGGGATGCCGGGGGCG 1003
consensus_11965#1      CCGCGGCCTCGCGCCGCGCCAGGAGACGGCGTACGTGGTGGTCGTCGGGTGCCGGGGACG 959
                       ***  * *** *****   **** ****   ***  **** * ** ** ******** **

consensus_11965#0      CGTGAACGGCATCCCGGCGGGGTACGTCGGGAACGCGCTGATGTTCGGGAAGGCGGAGGC 1063
consensus_11965#1      CGTGGGCGGCATCTCGTCGGGGTACATGGGGAACGCCGTGGTGCCCGGCGCGGTGAGGCT 1019
                       ****  ******* ** ******** * ********  ** **  ***   ** *  *  

consensus_11965#0      GACGGCCGGCGAGATCGAGGAGAAGGGGCTCGGGTGGACGGCATGGCAGCTGAACCGCGC 1123
consensus_11965#1      GACGGCCGGCGAGATCATGGAGAGGGGGCTCGGGTGGACGGCGTGGCAGCTGAACAAGTA 1079
                       ****************  ***** ****************** ************     

consensus_11965#0      CGTGGCGTCGTTCGACGAGGCCGGCATGAGGGAGTCGCTGGAGCGGTGGGTGCGGGAGCC 1183
consensus_11965#1      CGTGGCGTCGTTCGACGAGGCGGCCATGAGGGGCGCGCTGGCGTCGTGGCCGCGGCGGCC 1139
                       ********************* * ********   ****** *  ****  ****  ***

consensus_11965#0      GGAGTTCACGTACATGTCGAAGCTGCAATCCGGCGATGCCGGCGGCGTGGCGCTGATCAC 1243
consensus_11965#1      GGACTTCTTCTCCGTCCTGAGCCTGC------------TCGGCGGCGCCGCCATCATCAC 1187
                       *** ***   * * *   **  ****             ********  **  * *****

consensus_11965#0      GGGGAGCTCGCCGCGGTTCGACGTGTTCGGCAACGACTTCGGGTGGGGAAGGCCGGTGGC 1303
consensus_11965#1      GGGGAGCTCGCCGCGGTTCGACGTGTTCGGCAACGACTTCGGGTGGGGGAGGCCGGCGAC 1247
                       ************************************************ ******* * *

consensus_11965#0      GGTGAGGAGCGGCGCCGGGAACAAGATCGACGGGAAGGCGACGGTGTTCGAGGGCCCGGA 1363
consensus_11965#1      CGTGCGGAGCGGCGGCGCGAACAAGTTCGACGGGAAGGTGACGGTGTACGAGGGGCCGGA 1307
                        *** ********* ** ******* ************ ******** ****** *****

consensus_11965#0      CGGCGCCGGGAGCATGTCGCTCGAGGTTTGCATCGCGCCGGACGCGCTCCGGAGGCTCGT 1423
consensus_11965#1      CGGCGCCGGGAGCATGTCGCTGGAGGTTTGCCTGACTCCGGCGGCGCTGGCGAAGCTCGT 1367
                       ********************* ********* *  * ****  *****   ** ******

consensus_11965#0      CGCCGACGAGGAGTTCATGGACGCCGTCACCCTCCCCTCATCGTGATTAAACTTCATTGC 1483
consensus_11965#1      CGCCGACGAGGAGTTCATGGGCGCGGTGACC------ACGCCATGA------------GT 1409
                       ******************** *** ** ***       *  * ***            * 

consensus_11965#0      TCTACCAAAATATGGTGCTCTTTAGGGAAATATATTAATTTCGGCTTTAGCCCAATCAAC 1543
consensus_11965#1      TGCATCCATGCATGCTTCTATTCATTGCGATTTGCGAGCTCAA---TTGGTTAAAAAAAA 1466
                       *  * * *   *** * ** ** *  *  ** *   *  *      ** *   **  ** 

consensus_11965#0      AAAGAT-GTGACGAGAAGATGTAATCCATTCCTCTTGCATGCAAAATCATGGATACAATG 1602
consensus_11965#1      AACATTCACATCGACATCATGTAATCCATTT-------ATGTCAATTTGTCAGTAGAAAG 1519
                       **   *     *** *  ************        ***  ** *  *   ** ** *

consensus_11965#0      GTCATATCAATTTTCGTTAACTTTGGATGAATATTTACTGATAGGATTACTATCTGAATA 1662
consensus_11965#1      GTGATGA-ATTCATCAACAGCTATAGCTGATAGATCAGAGATA---TCACTG---GATTA 1572
                       ** **   * *  **   * ** * * ***    * *  ****   * ***    ** **

consensus_11965#0      ATTTGTTTGTTGGTGGAGTTAATATTTGTCTTATTTTCCATCCTATGTTAGTTACATTTT 1722
consensus_11965#1      CCTTTTGTATCAAACAAGGATAAATCAATAT-GTTTGTGA---------AGTGAAATTTC 1622
                         ** * * *      **   * **   * *  ***   *         *** * **** 

consensus_11965#0      ATTTGGATTTGCGCAAACAATTTTGTGATAATTAATTGGTTGTAATTTCTGTTGAAGGAA 1782
consensus_11965#1      GAATGGTTTTTAGCCGCCAAAAAAAAAA-------------------------------- 1650
                          *** ***  **   ***       *                                

consensus_11965#0      AGGACAGATTTTATCTATTGTCTAGCAATAGATA 1816
consensus_11965#1      ----------------------------------
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)