These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2257 fasta sequence [CCAATCCCAGCCATCAATACCTGCCTCCGCTTCGCCATCTCTCCCGAAGCCTCCTCTCTCTCTCTCTCTCCCCCCGATTCCACCACACGCAATCCAATTCCAACCTCGTGTGCTTCCACTTGTGCGTTTCGCCCGCTGCTGTGAACGTACTGCGAGATGGCAGCGGCGGCGGCGGCGGCGGAGGCGAAGCACCGGAAGGAGGAGGAGGAGGACGAGGAGGAGATGACGCTGGAGGACGGCGACATCGAGGAGAGCCCGCGCCGCAGCTTCGACGACGACTACGAGGACGGCGGGAGCGGCGACGACGACCGGGATGACGACGGCGAAGGTTTGGGATCGCCTCGCTCGTTCCAGTCCCGCCAGTGGCCGCAGAGCTACCGAGAAACAACTGACACCTATACAATTGCTGCATCTCCGAGCTTTGGTTACTTGGGTCCCTCTACAAGCAAATACTCGATCCTTGATGGTGGTCGTAGTAGTCTGGGATCCGACCTGAAGTTGCCCTTGTTGTCTGATAAGCTAGATGGGAAGCAAGACTCTGTCAAGAGCTTGAGAAAGACTCTTGGTTCAGCAATAGATAGGAAAAGCTCGTTACTTACGCAACATACTGGAGAAGTCTACATCGCTCAAGGATGCAGTGTGACACAGACGGTGTTCAATGGGGTTAATGTACTTGCTGGTGTTGGACTTCTTTCCACTCCATTTACAATTCATGAAGCTGGATGGGTAGGCCTTGCGGTCCTAGCTATGTTTGCTATTGTTTGCTGTTATACTGGAGTTCTGATGAAACACTGTTTTGAGAGCAAAGATGGTATTTCTACATATCCAGACATTGGCGAGGCTGCTTTTGGAAGGATT-GGTCGTCTGCTGATCTCTATTATACTCTATACTGAGCTATATTCATATTGTGTGGAATTCATTATTTTGGAAGGAGATAATATGACATCAATTTTCTCTCATATTGGTTTTGATTGGCTTGGCGTCCATATTGATGGGAAACATTTCTTTGGAGTGTTGACTGCTCTAATAGTCTTGCCTACAGTATGGTTGAGAGATCTTCGGGTTCTCTCCTACCTTTCTGGTCTCAACACTCTTAACCTCAAGTATTTTTCTCACTGCGATCATTAATGATATTAAGGCAGCAAATTGAATTGACAAGGTTTATTGAATTTCTTGTGCAGCGGGTGGTGTTATTGCAACTCTTCTTGTTTTCCTCTCTGTCGTTTTAGTTGGCGCTACTGATGGCGTAGGGTTTCATTTGACTGGGAAAGCAGTAAACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTGCTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATTCACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTATCATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAACTCTGAATCTTCCTAAACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATATGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTTGAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCGTCAACCGTGTGCATTGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCCCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGGTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGCTGCTTGCTTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATTAATTATAAAAAAAAAAAAAAAAAAACCCT] [+] EMBL AK066747 [CCAATCCCAGCCATCAATACCTGCCTCCGCTTCGCCATCTCTCCCGAAGCCTCCTCTCTCTCTCTCTCTCCCCCCGATTCCACCACACGCAATCCAATTCCAACCTCGTGTGCTTCCACTTGTGCGTTTCGCCCGCTGCTGTGAACGTACTGCGAGATGGCAGCGGCGGCGGCGGCGGCGGAGGCGAAGCACCGGAAGGAGGAGGAGGAGGACGAGGAGGAGATGACGCTGGAGGACGGCGACATCGAGGAGAGCCCGCGCCGCAGCTTCGACGACGACTACGAGGACGGCGGGAGCGGCGACGACGACCGGGATGACGACGGCGAAGGTTTGGGATCGCCTCGCTCGTTCCAGTCCCGCCAGTGGCCGCAGAGCTACCGAGAAACAACTGACACCTATACAATTGCTGCATCTCCGAGCTTTGGTTACTTGGGTCCCTCTACAAGCAAATACTCGATCCTTGATGGTGGTCGTAGTAGTCTGGGATCCGACCTGAAGTTGCCCTTGTTGTCTGATAAGCTAGATGGGAAGCAAGACTCTGTCAAGAGCTTGAGAAAGACTCTTGGTTCAGCAATAGATAGGAAAAGCTCGTTACTTACGCAACATACTGGAGAAGTCTACATCGCTCAAGGATGCAGTGTGACACAGACGGTGTTCAATGGGGTTAATGTACTTGCTGGTGTTGGACTTCTTTCCACTCCATTTACAATTCATGAAGCTGGATGGGTAGGCCTTGCGGTCCTAGCTATGTTTGCTATTGTTTGCTGTTATACTGGAGTTCTGATGAAACACTGTTTTGAGAGCAAAGATGGTATTTCTACATATCCAGACATTGGCGAGGCTGCTTTTGGAAGGATT GGTCGTCTGCTGATCTCTATTATACTCTATACTGAGCTATATTCATATTGTGTGGAATTCATTATTTTGGAAGGAGATAATATGACATCAATTTTCTCTCATATTGGTTTTGATTGGCTTGGCGTCCATATTGATGGGAAACATTTCTTTGGAGTGTTGACTGCTCTAATAGTCTTGCCTACAGTATGGTTGAGAGATCTTCGGGTTCTCTCCTACCTTTCTGGTCTCAACACTCTTAACCTCAAGTATTTTTCTCACTGCGATCATTAATGATATTAAGGCAGCAAATTGAATTGACAAGGTTTATTGAATTTCTTGTGCAGCGGGTGGTGTTATTGCAACTCTTCTTGTTTTCCTCTCTGTCGTTTTAGTTGGCGCTACTGATGGCGTAGGGTTTCATTTGACTGGGAAAGCAGTAAACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTGCTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATTCACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTATCATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAACTCTGAATCTTCCTAAACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATATGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTTGAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCGTCAACCGTGTGCATTGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCCCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGGTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGCTGCTTGCTTCTCAGTTCCTTGAAGTG ] [+] EMBL CF324127 [ GCCGCAGAGCTACCGAGAAACAACTGACACCTATACAATTGCTGCATCTCCGAGCTTTGGTTACTTGGGTCCCTCTACAAGCAAATACTCGATCCTTGATGGTGGTCGTAGTAGTCTGGGATCCGACCTGAAGTTGCCCTTGTTGTCTGATAAGCTAGATGGGAAGCAAGACTCTGTCAAGAGCTTGAGAAAGACTCTTGGTTCAGCAATAGATAGGAAAAGCTCGTTACTTACGCAACATACTGGAGAAGTCTACATCGCTCAAGGATGCAGTGTGACACAGACGGTGTTCAATGGGGTTAATGTACTTGCTGGTGTTGGACTTCTTTCCACTCCATTTACAATTCATGAAGCTGGATGGGTAGGCCTTGCGGTCCTAGCTATGTTTGCTATTGTTTGCTGTTATACTGGAGTTCTGATGAAACACTGTTTTGAGAGCAAAGATGGTATTTCTACATATCCAGACATTGGCGAGGCTGCTTTTGGAAGGATTGGGTCGTCTGCTGATCTCTATTATACTCTATACTGAGC ] [+] EMBL CA999268 [ AACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTGCTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATTCACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTATCATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAACTCTGAATCTTCCTAAACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATATGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTTGAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCATCAACCGTGTGCATTGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCCCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGA ] [-] EMBL CF325798 [ TTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCNCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGGTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGCTGCTTGCTTCTCAGTTCAAAAAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATTAATTATAAAAAAAAAAAAAAAAAAACCCT] consensusID : consensus_11966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1200 fasta sequence [TTGATTGGCTTGGCGTCCATATTGATGGGAAACATTTCTTTGGAGTGTTGACTGCTCTAATAGTCTTGCCTACAGTATGGTTGAGAGATCTTCGGGTTCTCTCCTACCTTTCTGCGGGTGGTGTTATTGCAACTCTTCTTGTTTTCCTCTCTGTCGTTTTAGTTGGCGCTACTGATGGCGTAGGGTTTCATTTGACTGGGAAAGCAGTAAACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTGCTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATTCACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTATCATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAACTGAATCTTCCTAAACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATATGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTTGAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCATCAACCGTGTGCATTGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCCCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGGTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGCTGCTTGCTTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATTAATTATAGATCGAGATTGCTGGATATTGAGTGTTGCAACTT] [+] EMBL AK060825 [TTGATTGGCTTGGCGTCCATATTGATGGGAAACATTTCTTTGGAGTGTTGACTGCTCTAATAGTCTTGCCTACAGTATGGTTGAGAGATCTTCGGGTTCTCTCCTACCTTTCTGCGGGTGGTGTTATTGCAACTCTTCTTGTTTTCCTCTCTGTCGTTTTAGTTGGCGCTACTGATGGCGTAGGGTTTCATTTGACTGGGAAAGCAGTAAACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTGCTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATTCACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTATCATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAACTGAATCTTCCTAAACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATATGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTTGAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCATCAACCGTGTGCATTGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCCCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGGTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGCTGCTTGCTTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATTAATTATAGATCGAGATTGCTGGATATTGAGTGTTGCAACTT] [+] EMBL AA750723 [ AGGACTGCCCTTGTTGCATCAACCGTGTGCATTGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCCCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCATCATAAGCGCTGCTCTTGGAACATACTC ] consensusID : consensus_11966#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 605 fasta sequence [CGCCCACCGTCCGCCCACGCGTCCGCGCGTGGTAG--CCAACACCAAAAATCGCTCTCTTTCTTTTTTGTCNCTTTTGTTTGTCAACTACATCCGTGGTTGACATTTTTGCTTCAATCTCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGNTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGGCTGCTTGCTTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATAATTATAGATCGAGATTGCTGGATATTGAGTGTTGCAACTTGCAACCCTTGTTNCCAAGCANAAAAA] [+] EMBL AU031717 [CGCCCACCGTCCGCCCACGCGTCCGCGCGTGGTAG CCAACACCAAAAATCGCTCTCTTTCTTTTTTGTCNCTTTTGTTTGTCAACTACATCCGTGGTTGACATTTTTGCTTCAATCTCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGNTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGGCTGCTTGCTTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATAATTATAGATCGAGATTGCTGGATATTGAGTGTTGCAACTTGCAACCCTTGTTNCCAAGCANAAAAA] [+] EMBL OSR07591A [ CCGCGCGT GTAGGACCAACACCAAAAATCGCTCTCTTTCTTTTTTGTTTCTTTTGTTTGTCAACTACATCCGTGGTTGACATTTTTGTTTCAATCTCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGGTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGGCCCAACCATGTAATGCATGTACCTGCATA GCTGCTTGCTTCTCAGTTCCTTGAGGTGG ATATCTTCATCA TTGCTTATA ] consensusID : consensus_11966#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [ATCTTTGTGGCCGTCATGAATGCCTNGCCGNNGGCTTCTTGAAGATTAGGCAAATNAAGCACGACNGCCCAGGTCGTNTGCAAGTATTGGGTGATAATAATGATTGGGCACCATGAAGCGCTGCTCTTGGAACATGACTCGTGCGGTACTGCAGAATTGTGGAGAACTACTGAATTACCGAAACCTGAGCTCGCGTGCAGTGGCAGTTGCCCAGCAGGTGAGGCCACAGGGCATGGTGCATGATGCTGATTGACTGCACCCCGCTGTGACGGTTACGGCGCTGCAAAATGGGTGCAATATGCGTGTGGTTTTATCCAGAATGTGTTGCTGAGAATGTGACCGAGGTTGCACTGGTGAATNGATTGCGACCCCAACCATGGTGAATGGCATGGGACCTGCATGAGCTGCTTGCTGTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTACATTATANGTACTCATTAATTATAAAAAAAAAAAAA] [+] EMBL BI806141 [ATCTTTGTGGCCGTCATGAATGCCTNGCCGNNGGCTTCTTGAAGATTAGGCAAATNAAGCACGACNGCCCAGGTCGTNTGCAAGTATTGGGTGATAATAATGATTGGGCACCATGAAGCGCTGCTCTTGGAACATGACTCGTGCGGTACTGCAGAATTGTGGAGAACTACTGAATTACCGAAACCTGAGCTCGCGTGCAGTGGCAGTTGCCCAGCAGGTGAGGCCACAGGGCATGGTGCATGATGCTGATTGACTGCACCCCGCTGTGACGGTTACGGCGCTGCAAAATGGGTGCAATATGCGTGTGGTTTTATCCAGAATGTGTTGCTGAGAATGTGACCGAGGTTGCACTGGTGAATNGATTGCGACCCCAACCATGGTGAATGGCATGGGACCTGCATGAGCTGCTTGCTGTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTACATTATANGTACTCATTAATTATAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11966#0 CCAATCCCAGCCATCAATACCTGCCTCCGCTTCGCCATCTCTCCCGAAGCCTCCTCTCTC 60 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 TCTCTCTCTCCCCCCGATTCCACCACACGCAATCCAATTCCAACCTCGTGTGCTTCCACT 120 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 TGTGCGTTTCGCCCGCTGCTGTGAACGTACTGCGAGATGGCAGCGGCGGCGGCGGCGGCG 180 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 GAGGCGAAGCACCGGAAGGAGGAGGAGGAGGACGAGGAGGAGATGACGCTGGAGGACGGC 240 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 GACATCGAGGAGAGCCCGCGCCGCAGCTTCGACGACGACTACGAGGACGGCGGGAGCGGC 300 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 GACGACGACCGGGATGACGACGGCGAAGGTTTGGGATCGCCTCGCTCGTTCCAGTCCCGC 360 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 CAGTGGCCGCAGAGCTACCGAGAAACAACTGACACCTATACAATTGCTGCATCTCCGAGC 420 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 TTTGGTTACTTGGGTCCCTCTACAAGCAAATACTCGATCCTTGATGGTGGTCGTAGTAGT 480 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 CTGGGATCCGACCTGAAGTTGCCCTTGTTGTCTGATAAGCTAGATGGGAAGCAAGACTCT 540 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 GTCAAGAGCTTGAGAAAGACTCTTGGTTCAGCAATAGATAGGAAAAGCTCGTTACTTACG 600 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 CAACATACTGGAGAAGTCTACATCGCTCAAGGATGCAGTGTGACACAGACGGTGTTCAAT 660 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 GGGGTTAATGTACTTGCTGGTGTTGGACTTCTTTCCACTCCATTTACAATTCATGAAGCT 720 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 GGATGGGTAGGCCTTGCGGTCCTAGCTATGTTTGCTATTGTTTGCTGTTATACTGGAGTT 780 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 CTGATGAAACACTGTTTTGAGAGCAAAGATGGTATTTCTACATATCCAGACATTGGCGAG 840 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 GCTGCTTTTGGAAGGATTGGTCGTCTGCTGATCTCTATTATACTCTATACTGAGCTATAT 900 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 TCATATTGTGTGGAATTCATTATTTTGGAAGGAGATAATATGACATCAATTTTCTCTCAT 960 consensus_11966#1 ------------------------------------------------------------ consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 ATTGGTTTTGATTGGCTTGGCGTCCATATTGATGGGAAACATTTCTTTGGAGTGTTGACT 1020 consensus_11966#1 -------TTGATTGGCTTGGCGTCCATATTGATGGGAAACATTTCTTTGGAGTGTTGACT 53 consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 GCTCTAATAGTCTTGCCTACAGTATGGTTGAGAGATCTTCGGGTTCTCTCCTACCTTTCT 1080 consensus_11966#1 GCTCTAATAGTCTTGCCTACAGTATGGTTGAGAGATCTTCGGGTTCTCTCCTACCTTTCT 113 consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 GGTCTCAACACTCTTAACCTCAAGTATTTTTCTCACTGCGATCATTAATGATATTAAGGC 1140 consensus_11966#1 G----------------------------------------------------------- 114 consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 AGCAAATTGAATTGACAAGGTTTATTGAATTTCTTGTGCAGCGGGTGGTGTTATTGCAAC 1200 consensus_11966#1 -----------------------------------------CGGGTGGTGTTATTGCAAC 133 consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 TCTTCTTGTTTTCCTCTCTGTCGTTTTAGTTGGCGCTACTGATGGCGTAGGGTTTCATTT 1260 consensus_11966#1 TCTTCTTGTTTTCCTCTCTGTCGTTTTAGTTGGCGCTACTGATGGCGTAGGGTTTCATTT 193 consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 GACTGGGAAAGCAGTAAACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTG 1320 consensus_11966#1 GACTGGGAAAGCAGTAAACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTG 253 consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 CTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATT 1380 consensus_11966#1 CTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATT 313 consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 CACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTAT 1440 consensus_11966#1 CACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTAT 373 consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 CATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAACTCTGAATCTTCCTAA 1500 consensus_11966#1 CATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAAC--TGAATCTTCCTAA 431 consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 ACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATA 1560 consensus_11966#1 ACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATA 491 consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 TGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTT 1620 consensus_11966#1 TGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTT 551 consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 GAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCGTCAACCGTGTGCAT 1680 consensus_11966#1 GAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCATCAACCGTGTGCAT 611 consensus_11966#3 ------------------------------------------------------------ consensus_11966#2 ------------------------------------------------------------ consensus_11966#0 TGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTAT 1740 consensus_11966#1 TGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTAT 671 consensus_11966#3 ----------------------------------------------------------AT 2 consensus_11966#2 ----------CGCCCACCGTCCGCCCACGCGTCCGCGCGTGGTAG-CCAACACCAAAAAT 49 ** consensus_11966#0 ACTTGTGGCCGTCAT-AATGCCTGCACTGTG-CTTCTTGAAGATTAGGCAA-AATAAAGC 1797 consensus_11966#1 ACTTGTGGCCGTCAT-AATGCCTGCACTGTG-CTTCTTGAAGATTAGGCAA-AATAAAGC 728 consensus_11966#3 CTTTGTGGCCGTCATGAATGCCTNGCCGNNGGCTTCTTGAAGATTAGGCAA-A-TNAAGC 60 consensus_11966#2 CGCTCTCTTTCTTTTTTGTCNCTTTTGTTTGTCAACTACATCCGTGGTTGACATTTTTGC 109 * * * * * ** * * ** * * * * * * ** consensus_11966#0 AACGACTGCCCAGGTCGTT-GCAAGTATTGGT--ATAATAAT-ATTGGGCACCAT-AAGC 1852 consensus_11966#1 AACGACTGCCCAGGTCGTT-GCAAGTATTGGT--ATAATAAT-ATTGGGCACCAT-AAGC 783 consensus_11966#3 A-CGACNGCCCAGGTCGTNTGCAAGTATTGGGTGATAATAATGATTGGGCACCATGAAGC 119 consensus_11966#2 TTCAAT--CTCAGGTCGTT-GCAAGTATTGGT--ATAATAAT-ATTGGGCACCAT-AAGC 162 * * * ******** *********** ******** ************ **** consensus_11966#0 GCTGCTCTTGGAACAT-ATTCGT-CGGTACT-CAGAATTGTGGAGAACTACT-AATTAC- 1907 consensus_11966#1 GCTGCTCTTGGAACAT-ATTCGT-CGGTACT-CAGAATTGTGGAGAACTACT-AATTAC- 838 consensus_11966#3 GCTGCTCTTGGAACATGACTCGTGCGGTACTGCAGAATTGTGGAGAACTACTGAATTACC 179 consensus_11966#2 GCTGCTCTTGGAACAT-ATTCGT-CGGTACT-CAGAATTGTGGAGAACTACT-AATTAC- 217 **************** * **** ******* ******************** ****** consensus_11966#0 GAAACCT-AGCTCGCGTGCAGTG-CAGTT-CCCAGCAGGTGAGGCCACAGG-CATG---- 1959 consensus_11966#1 GAAACCT-AGCTCGCGTGCAGTG-CAGTT-CCCAGCAGGTGAGGCCACAGG-CATG---- 890 consensus_11966#3 GAAACCTGAGCTCGCGTGCAGTGGCAGTTGCCCAGCAGGTGAGGCCACAGGGCATGGTGC 239 consensus_11966#2 GAAACCT-AGCTCGCGTGCAGTG-CAGTT-CCCAGCAGGTGAGGCCACAGG-CATG---- 269 ******* *************** ***** ********************* **** consensus_11966#0 -TCATATCTATT-ACT-CACCCCGCTT--ACGGTTACGGCGCTCAAAAATGGTCA-AATA 2013 consensus_11966#1 -TCATATCTATT-ACT-CACCCCGCTT--ACGGTTACGGCGCTCAAAAATGGTCA-AATA 944 consensus_11966#3 ATGATGCTGATTGACTGCACCCCGCTGTGACGGTTACGGCGCTGCAAAATGGGTGCAATA 299 consensus_11966#2 -TCATATCTATT-ACT-CACCCCGCTT--ACGNTTACGGCGCTCAAAAATGGTCA-AATA 323 * ** *** *** ********* *** ********** ******* **** consensus_11966#0 T-CGTGTG--TTTATC-AGAATTT--TGCTAGAATT---ACCGAGTTCACTGTAATTATT 2064 consensus_11966#1 T-CGTGTG--TTTATC-AGAATTT--TGCTAGAATT---ACCGAGTTCACTGTAATTATT 995 consensus_11966#3 TGCGTGTGGTTTTATCCAGAATGTGTTGCTGAGAATGTGACCGAGGTTGCACTGGTGAAT 359 consensus_11966#2 T-CGTGTG--TTTATC-AGAATTT--TGCTAGAATT---ACCGAGTTCACTGTAATTATT 374 * ****** ****** ***** * **** * * ****** * * * * * * consensus_11966#0 CGA-------CCCAACCATGT--AATG-CATGT-ACCTGCAT-AGCTGCTTGCT-TCTCA 2111 consensus_11966#1 CGA-------CCCAACCATGT--AATG-CATGT-ACCTGCAT-AGCTGCTTGCT-TCTCA 1042 consensus_11966#3 NGATTGCGACCCCAACCATGGTGAATGGCATGGGACCTGCATGAGCTGCTTGCTGTCTCA 419 consensus_11966#2 CGA-------CCCAACCATGT--AATG-CATGT-ACCTGCATAGGCTGCTTGCT-TCTCA 422 ** ********** **** **** ******** ********** ***** consensus_11966#0 GTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTT 2171 consensus_11966#1 GTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTT 1102 consensus_11966#3 GTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCA-TCACTGTT 478 consensus_11966#2 GTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTT 482 *************************************************** ******** consensus_11966#0 GTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATTAAT 2231 consensus_11966#1 GTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATTAAT 1162 consensus_11966#3 GTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTA--CATTATANGTACTCA-TTAAT 535 consensus_11966#2 GTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCA-ATAAT 541 ************************************* ****** ******* **** consensus_11966#0 TATAAAAAAAAAAAAAAAAAAACCCT---------------------------------- 2257 consensus_11966#1 TATAGATCGAGATTGCTGGATATTGAGTGTTGCAACTT---------------------- 1200 consensus_11966#3 TATAAAAAAAAAAAAA-------------------------------------------- 551 consensus_11966#2 TATAGATCGAGATTGCTGGATATTGAGTGTTGCAACTTGCAACCCTTGTTNCCAAGCANA 601 **** * * * consensus_11966#0 ---- consensus_11966#1 ---- consensus_11966#3 ---- consensus_11966#2 AAAA 605 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||