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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1739 fasta sequence
[TCGTCTCCAAACCCTTCCCAAAACCCTACTCCGCGCACGCGCCTCTCCTTCTAGAACCTTCTGGAACCCTCGCCCCCGCGAAGGCGGCGCCG-CCGCCGAGATGGCCTCCTCCCCCTCCGCCGTCGTCCTGCAGGCCGCCCTCGACGGCGACCTCCACCTCCTGTGTGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGAGACACCAATACTTCTCGCCGCATGTGACGGGGACATTAATGTTTTAATATACCTTCTTGATCATGGTGGTGACCCAGCCATACC-TAACGCGGGGGGCTTCATGCCGCTGCAC-TACGCAGCAGAGTACGGGCATGTTGATGTTGTGAGACTATTGCTGTCCAAAGGAG-TTCATGTGGATCCTCTGAATTATAGTGGGGCCCCGCTGCACTTGGCTACCGCAAATGACCATGATCAGGTTGCGAAGGTTCTGCTTGAGCATGGTGCTGATCCCAACAGAGTTGTCAACCATGTCCTTTCACCACTCGTTGTTGCTTGCTGCAGCCACTCCTTGAAATGCATGAAGTTACTGATCAAGGCTGGTGCTGATGTGAATGATAGAAGTTCTACTGGACCAAGAACGACCCCTTTAGTGCTTGCAGTTGATGATGGATCAGCCGATATTGTCAAAATCTTGCTAGAGGCTGGAGCTGACCCTAACATTCGTAACGAG--TGGGAGGATTCCTATCATGATGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTGTTTCCTAGGACAAAACCAATTCCATGTCTGCCAGATTGGAGTGTTGATGGGATAATTAGAACTATGAGATTCACACGTACCGAACCTGAGGATGCAGTTCCTGTGGAAATACTAGTATCTGATTCGAAGTTAAATGCCAAGGAAGCATTTGCAGAGGGTGAATACATTACAGCAATCTACTTCTACACCAAGGCACTGGAAAAAGCCCCACTTGATGCCACCTTGTTCGCCAACCGCAGCCTCTGCTGGCTGCGGCTGCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCC-TGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAGAGAAGCGGCGGCGGCTTTCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGACTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTGTTTCCCAAACTATCTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTTTGGTCGAAAAAAAAAACGTAGTAACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGTTTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAGCTGCACTTGTCTTCCCTTTGTGTGCGACTCTAATGCAAGCGCAGACTGGCAGCATGATATTTGTATATGATATATGTGAAGTCCGGCAGT]
[+] EMBL AK101252 [TCGTCTCCAAACCCTTCCCAAAACCCTACTCCGCGCACGCGCCTCTCCTTCTAGAACCTTCTGGAACCCTCGCCCCCGCGAAGGCGGCGCCG CCGCCGAGATGGCCTCCTCCCCCTCCGCCGTCGTCCTGCAGGCCGCCCTCGACGGCGACCTCCACCTCCTGTGTGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGAGACACCAATACTTCTCGCCGCATGTGACGGGGACATTAATGTTTTAATATACCTTCTTGATCATGGTGGTGACCCAGCCATACC TAACGCGGGGGGCTTCATGCCGCTGCAC TACGCAGCAGAGTACGGGCATGTTGATGTTGTGAGACTATTGCTGTCCAAAGGAG TTCATGTGGATCCTCTGAATTATAGTGGGGCCCCGCTGCACTTGGCTACCGCAAATGACCATGATCAGGTTGCGAAGGTTCTGCTTGAGCATGGTGCTGATCCCAACAGAGTTGTCAACCATGTCCTTTCACCACTCGTTGTTGCTTGCTGCAGCCACTCCTTGAAATGCATGAAGTTACTGATCAAGGCTGGTGCTGATGTGAATGATAGAAGTTCTACTGGACCAAGAACGACCCCTTTAGTGCTTGCAGTTGATGATGGATCAGCCGATATTGTCAAAATCTTGCTAGAGGCTGGAGCTGACCCTAACATTCGTAACGAG TGGGAGGATTCCTATCATGATGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTGTTTCCTAGGACAAAACCAATTCCATGTCTGCCAGATTGGAGTGTTGATGGGATAATTAGAACTATGAGATTCACACGTACCGAACCTGAGGATGCAGTTCCTGTGGAAATACTAGTATCTGATTCGAAGTTAAATGCCAAGGAAGCATTTGCAGAGGGTGAATACATTACAGCAATCTACTTCTACACCAAGGCACTGGAAAAAGCCCCACTTGATGCCACCTTGTTCGCCAACCGCAGCCTCTGCTGGCTGCGGCTGCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCC TGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAGAGAAGCGGCGGCGGCTTTCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGACTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTGTTTCCCAAACTATCTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTTTGGTCGAAAAAAAAAACGTAGTAACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGTTTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAGCTGCACTTGTCTTCCCTTTGTGTGCGACTCTAATGCAAGCGCAGACTGGCAGCATGATATTTGTATATGATATATGTGAAGTCCGGCAGT]
[+] EMBL C97400 [ CGCACG NCCTCTCCTTCTAGAACCTTCTGGAACCCTCGCCCCCGCGAAGGCGACGCCGCCCGANGA ATGGCCTCCTCCCCCTCCGCCGTCGTCCTGCAGGCCGCCCTCGACGGCGACCTCCACCTCCTGTGTGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGAGACACCAATACTTCTCGCCGCATGTGACGGGGACATTAATGTTTTAATATACCTTCTTGATCATGGTGGTGACCCAGCCATACCTTAACGCGGGGGGCTTCATGCCGCTGCACTTACGCAGCAGAGTACGGGCATGTTGATGTTGTGAGACTATTGCTGTCCAAAGGAGTTTCATGTGGATCCTCTGAATTATAGTGGGGCCCCGCTGCACTTGGCTACCGCAAATGACCATGATCAGGTTGCGAAGGTTCTGCTTGAGCATGGTGCTGATCC ]
[+] EMBL CF327620 [ ACTCCTTGAAATGCATGAAGTTACTGATCAAGGCTGGTGCTGATGTGAATGATAGAAGTTCTACTGGACCAAGAACGACCCCTTTAGTGCTTGCAGTTGATGATGGATCAGCCGATATTGTCAAAATCTTGCTAGAGGCTGGAGCTGACCCTAACATTCGTAACGAGGATGGGAGGATTCCTATCATGATGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTGTTTCCTAGGACAAAACCAATTCCATGTCTGCCAGATTGGAGTGTTGATGGGATAATTAGAACTATGAGATTCGCACGTACCGAACCTGAGGATGCAGTTCCTGTGGAAATACTAGTATCTGATTCGAAGTTAAATGCCAAGGAAGCATTTGCAGAGGGTGAATACATTACAGCAATCTACTTCTACACCAAGGCACTGGAAAAAGCCCCACTTGATGCCACCTTGTTCGCCAACCGCAGCCTCTGCTGGCTGCGGCTGCGAGAGGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTTGCGCCCTGGTTGGT ]
[-] EMBL CF327621 [ CAGAGAAGCGGCGGCGGCTTTCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGACTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTGTTTCCCAAACTATTTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTTTGGTCGAAAAAAAAAACGTAGTAACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGTTTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAGCTGCACTTGTCTTCCCTTTGTGTGCGACTCTAATGCAAGCGCAGA ]
consensusID : consensus_11969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1546 fasta sequence
[CCGCTTCCTCTCCTCTCCAAAACCCTCCCCAAAAACCACGCCCCCGCCTTCCAGAACCTTCTGGAACCGCGATGGCCCCCTCCCCTTCCGACGTCGCCCTGCAGGCCGCCCAGGACGGCAACCTCCGCCTCCTCAGGAAGATGGCGAAGAAGTTGGATTTGCGAGGAGTCAAGGACAAGAATGGCCTAAGCGCGCTTCACTTCGCTGCAAGCCATGGGCACCTGGATTGCTGCAAGTTCCTTGTGGAGGAATCGGGCCTTGATGTCAACTCGGTTGGTCACAAAGGTGAAACGCCAGTGTTCTATGCCGCGATCGATGGGAACGTTCAGGTTTTGGGGTACCTTCTTGATCATGGTGGTGACCCGGTGAAACCCGAGGAGAGGGGCTGCACGCCGCTGCACAATGCGGCAGAGAATGGGCATGATGAGGCTGTAAGACTATTGCTGTCCAAAGGAGTTCATGTGGATCCTCTGAATTATCGTGGGGCCCCACTGCACTTGGCTGCCTCAAAGGACCGGGTTCAAGCCATGAAGGTTCTGCTTGAACATGGTGCTGATCCCAACAGAGTTGTCAATCATATCTTTTCACCACTCATGATGGCATGCTGCGGGCACTCCTTGAAATGCGTGAAGCTACTTGTTGAGGCTGGCGCTGATGTGAACGGGGCTGGAGCTGACCCTAACATTCCTGACGAGGAAGGGAGGATTCCTATCATGGTGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTATTTCCTCGGACAAAACCTATTCCATGTCTGCCAGATTGGAATGTTGACGGGATAATTAGAACTATGAGAACCACACGTATTGAACCTCAGTCTGCTATTCCTGTGGAAGAACAAGTGTCTGATGCAAAGTCGAAAGGAAAGGAAGCATTTGCAAAGGGTGACTACCTTACAGCCATCTACTTCTACACCCTGGCAATGGATAAATCCCCACTTGATGCCACCTTGTTTGCCAACCGGAGCCTTTGCTGGCTGCGGCAGCGAGAAGGGGACAGAGCTTTACTGGATGCACAGCAGTGCAGGATGCTGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCAGCTCTCAGTTTCATGAAGGACTACAAAGGAGCAGTGGACGCATTCGGGGAGGCACTGAAACTTGACCCCATGAGCGACGAGGTCAAGAACGCGTTAAGGGAGGCGATCGAGTGTCTGAAGAGAGCTGCTTGATCTGAAGATCCGAATAACCCTTGAGCAGCTACTGCATCGTCCTTTTGGCCTCACCTCACCTGTCAGACTGCTTCACATCTTTCCACTGTAACTACCAACGACTAGGTTTTGCAAACCATGCTGACTGTTTAGCTATCTCTGCTGTCAGAGTACGTATGGCAGGAACATGCACTGTCTTTCGGTCAGAAACCATATGGTTTGCTAGGTCATCATCACCCATACATATGCAGTTGCACTTTCTTCCATTTTGTGCGCAACTCATGCAAGTGCAAACTGGCAGTAATAGTATATGATATGTAAAGTTCGTCAGT]
[+] EMBL AK063560 [CCGCTTCCTCTCCTCTCCAAAACCCTCCCCAAAAACCACGCCCCCGCCTTCCAGAACCTTCTGGAACCGCGATGGCCCCCTCCCCTTCCGACGTCGCCCTGCAGGCCGCCCAGGACGGCAACCTCCGCCTCCTCAGGAAGATGGCGAAGAAGTTGGATTTGCGAGGAGTCAAGGACAAGAATGGCCTAAGCGCGCTTCACTTCGCTGCAAGCCATGGGCACCTGGATTGCTGCAAGTTCCTTGTGGAGGAATCGGGCCTTGATGTCAACTCGGTTGGTCACAAAGGTGAAACGCCAGTGTTCTATGCCGCGATCGATGGGAACGTTCAGGTTTTGGGGTACCTTCTTGATCATGGTGGTGACCCGGTGAAACCCGAGGAGAGGGGCTGCACGCCGCTGCACAATGCGGCAGAGAATGGGCATGATGAGGCTGTAAGACTATTGCTGTCCAAAGGAGTTCATGTGGATCCTCTGAATTATCGTGGGGCCCCACTGCACTTGGCTGCCTCAAAGGACCGGGTTCAAGCCATGAAGGTTCTGCTTGAACATGGTGCTGATCCCAACAGAGTTGTCAATCATATCTTTTCACCACTCATGATGGCATGCTGCGGGCACTCCTTGAAATGCGTGAAGCTACTTGTTGAGGCTGGCGCTGATGTGAACGGGGCTGGAGCTGACCCTAACATTCCTGACGAGGAAGGGAGGATTCCTATCATGGTGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTATTTCCTCGGACAAAACCTATTCCATGTCTGCCAGATTGGAATGTTGACGGGATAATTAGAACTATGAGAACCACACGTATTGAACCTCAGTCTGCTATTCCTGTGGAAGAACAAGTGTCTGATGCAAAGTCGAAAGGAAAGGAAGCATTTGCAAAGGGTGACTACCTTACAGCCATCTACTTCTACACCCTGGCAATGGATAAATCCCCACTTGATGCCACCTTGTTTGCCAACCGGAGCCTTTGCTGGCTGCGGCAGCGAGAAGGGGACAGAGCTTTACTGGATGCACAGCAGTGCAGGATGCTGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCAGCTCTCAGTTTCATGAAGGACTACAAAGGAGCAGTGGACGCATTCGGGGAGGCACTGAAACTTGACCCCATGAGCGACGAGGTCAAGAACGCGTTAAGGGAGGCGATCGAGTGTCTGAAGAGAGCTGCTTGATCTGAAGATCCGAATAACCCTTGAGCAGCTACTGCATCGTCCTTTTGGCCTCACCTCACCTGTCAGACTGCTTCACATCTTTCCACTGTAACTACCAACGACTAGGTTTTGCAAACCATGCTGACTGTTTAGCTATCTCTGCTGTCAGAGTACGTATGGCAGGAACATGCACTGTCTTTCGGTCAGAAACCATATGGTTTGCTAGGTCATCATCACCCATACATATGCAGTTGCACTTTCTTCCATTTTGTGCGCAACTCATGCAAGTGCAAACTGGCAGTAATAGTATATGATATGTAAAGTTCGTCAGT]
consensusID : consensus_11969#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 789 fasta sequence
[ATTCCATGTTCTCCCAGATTTGGATTTTTTNAATGGGATTANTTTAGAACTTTTGAGAATCCACACGTACCGAACCTGGAGGAATGCCAGTTCCCTGTGNAAANACTAGTATCTGATTTCGAANTTAAATGCCCAAGGAAGCTTTGNCAGAGGTTGATTACATTACANCATTCTACTTCTAACACCAGGNCACTGGAAAAAGCCCCACTTGATGCCCACNTTGTTCGCCAACCGCAGCNTCTGCTGGCTNCGGCTNCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAGTAGAAGCGGCGGCGGCTTTCCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGACTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTGTTTCCCAAACTATCTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTTTGGTCGAAAAAAAAAACGTAGTAACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGTTTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAAAAAAAAAAA]
[+] EMBL C97401 [ATTCCATGTTCTCCCAGATTTGGATTTTTTNAATGGGATTANTTTAGAACTTTTGAGAATCCACACGTACCGAACCTGGAGGAATGCCAGTTCCCTGTGNAAANACTAGTATCTGATTTCGAANTTAAATGCCCAAGGAAGCTTTGNCAGAGGTTGATTACATTACANCATTCTACTTCTAACACCAGGNCACTGGAAAAAGCCCCACTTGATGCCCACNTTGTTCGCCAACCGCAGCNTCTGCTGGCTNCGGCTNCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAGTAGAAGCGGCGGCGGCTTTCCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGACTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTGTTTCCCAAACTATCTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTTTGGTCGAAAAAAAAAACGTAGTAACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGTTTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAAAAAAAAAAA]
consensusID : consensus_11969#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[TTTTTTTTTTTTTGGGGGGGATGACGAATTCGGGTATTGATTTCGTACGGTTTGCTGGCTAGTTTAGATGGAAATCCTCCAATTCGAGGATAGATGGATTGGATTTACTCGATTTCTACGGTTTGGACTCCCATTTGTGCGGATTGCTGAATTAGCTACAGTATATTTTCCCCCCTTTTTTTAATCTGTTTGATTCACTTACGTGGCTGTGTTGTTCGGATTTTGCTGCTGCTGGTGGAATCGATCCTTTGTAGAGATGGCGAAGAAGTTGGATTTGCGAGGAGTCAAGGACAAGAATGGCCTAAGCGCGCTTCACTTCGCTGCAAGCCATGGGCACCTGGATTGCTGCAAGTTCCTTGTGGAGGAATCGGGCCTTGATGTCAACTCGGTTGGTCACAAAGGTGAAACGCCAGTGTTCTATGCCGCGATCGATGGGAACATTCAGGTTTTGGGGTACCTTCTTGATCATGGTGGTGACCCGGTGAAACCCGAGGAGAGGGGCTGCACGCCGCTGCACAATGCGGCAGAGAATGGTCTGCTTACTGTGCTCTTCGGTTCACTTGCCGGATCTGGATTTTAAGGATGGCTTATATGGCATTTCTTGCATACCAATGACATGATATCTGTCTGTGGATTATCTTGGTTGAACCTTTGTGCTAATTTT]
[+] EMBL CA759758 [TTTTTTTTTTTTTGGGGGGGATGACGAATTCGGGTATTGATTTCGTACGGTTTGCTGGCTAGTTTAGATGGAAATCCTCCAATTCGAGGATAGATGGATTGGATTTACTCGATTTCTACGGTTTGGACTCCCATTTGTGCGGATTGCTGAATTAGCTACAGTATATTTTCCCCCCTTTTTTTAATCTGTTTGATTCACTTACGTGGCTGTGTTGTTCGGATTTTGCTGCTGCTGGTGGAATCGATCCTTTGTAGAGATGGCGAAGAAGTTGGATTTGCGAGGAGTCAAGGACAAGAATGGCCTAAGCGCGCTTCACTTCGCTGCAAGCCATGGGCACCTGGATTGCTGCAAGTTCCTTGTGGAGGAATCGGGCCTTGATGTCAACTCGGTTGGTCACAAAGGTGAAACGCCAGTGTTCTATGCCGCGATCGATGGGAACATTCAGGTTTTGGGGTACCTTCTTGATCATGGTGGTGACCCGGTGAAACCCGAGGAGAGGGGCTGCACGCCGCTGCACAATGCGGCAGAGAATGGTCTGCTTACTGTGCTCTTCGGTTCACTTGCCGGATCTGGATTTTAAGGATGGCTTATATGGCATTTCTTGCATACCAATGACATGATATCTGTCTGTGGATTATCTTGGTTGAACCTTTGTGCTAATTTT]
consensusID : consensus_11969#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 502 fasta sequence
[TTTTTTTTTGGAGGCGAGCATCTCCCATTGATTCGGCAAGGTGCGATCGTGTGGTGTACTGGTTTGCAATGCACGATTCCGGATGTGGGGGGAAATCTGGGGTGGTTGCAGCTGCGATGTTCTCTGCGCGGTAGCTCATAGCAAAAATCTGGGTGGCGATTGACGAATCGGGTGTTGATTTCGTTCTGTTTGATCGCTGGTTTAGGTGGAAATACCTAATTGGGGGCTATGTGTATTGCATAGTTTGGAGATTTCTGAATTAGCCTTTTGTTTCCCCCAAATTTTCTGTTTGATTCACTCGCAATCTATCTATCTATCTATCCTGGGTAGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGCGTGCACATCAATGATTTCTCG]
[-] EMBL AU082971 [TTTTTTTTTGGAGGCGAGCATCTCCCATTGATTCGGCAAGGTGCGATCGTGTGGTGTACTGGTTTGCAATGCACGATTCCGGATGTGGGGGGAAATCTGGGGTGGTTGCAGCTGCGATGTTCTCTGCGCGGTAGCTCATAGCAAAAATCTGGGTGGCGATTGACGAATCGGGTGTTGATTTCGTTCTGTTTGATCGCTGGTTTAGGTGGAAATACCTAATTGGGGGCTATGTGTATTGCATAGTTTGGAGATTTCTGAATTAGCCTTTTGTTTCCCCCAAATTTTCTGTTTGATTCACTCGCAATCTATCTATCTATCTATCCTGGGTAGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGCGTGCACATCAATGATTTCTC ]
[-] EMBL OSC3351 [ ctGTTT CAAT CACAAT CGGATGT GGGGGAAATCT GGGTGGTTGCAACTGCAATGTTCCCTGCGCGGTAGCTCATAGCAAAAATCTGGGTGGCGATTGACGAATCGGNTGTTGATTTCGTTCTGTTTGATCGCTGGTTTAGGTGGAAATACCTAATTGGGGGCTATGTGTATTGCATAGTTTGGAGATTTCTGAATTAGCCTTTTGTTTCCCCCAAATTTTCTGTTTGATTCACTCGCAATCTATCTATCTATCTATCCTGGGTAGAAATGGCCAAGAAGTTGGA CTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGCGTGCACATCAATGATTTCTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11969#0 TCGTCTCCAAACCCTTCCCAAAACCCTACTCCGCGCACGCGCCTCTCCTTCTAGAACCTT 60
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 -----------------------------CCGCTTCCTCTCCTCTCCAAAACCCTCCCCA 31
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 CTGGAACCCTCGCCCCCGCGAAGGCGGCGCCGCCGCCGAGATGGCCTCCTCCCCCTCCGC 120
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 AAAACCACGCCCCCGCCTTCCAGAACCTTCTGGAACCGCGATGGCCCCCTCCCCTTCCGA 91
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 CGTCGTCCTGCAGGCCGCCCTCGACGGCGACCTCCACCTCCTGTGTGAAATGGCCAAGAA 180
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 CGTCGCCCTGCAGGCCGCCCAGGACGGCAACCTCCGCCTCCTCAGGAAGATGGCGAAGAA 151
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 GTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAG 240
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 GTTGGATTTGCGAGGAGTCAAGGACAAGAATGGCCTAAGCGCGCTTCACTTCGCTGCAAG 211
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 CTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTC 300
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 CCATGGGCACCTGGATTGCTGCAAGTTCCTTGTGGAGGAATCGGGCCTTGATGTCAACTC 271
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 AGGCTCTCACAGAGGTGAGACACCAATACTTCTCGCCGCATGTGACGGGGACATTAATGT 360
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 GGTTGGTCACAAAGGTGAAACGCCAGTGTTCTATGCCGCGATCGATGGGAACGTTCAGGT 331
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 TTTAATATACCTTCTTGATCATGGTGGTGACCCAGCCATACCTAACGCGGGGGGCTTCAT 420
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 TTTGGGGTACCTTCTTGATCATGGTGGTGACCCGGTGAAACCCGAGGAGAGGGGCTGCAC 391
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 GCCGCTGCACTACGCAGCAGAGTACGGGCATGTTGATGTTGTGAGACTATTGCTGTCCAA 480
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 GCCGCTGCACAATGCGGCAGAGAATGGGCATGATGAGGCTGTAAGACTATTGCTGTCCAA 451
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 AGGAGTTCATGTGGATCCTCTGAATTATAGTGGGGCCCCGCTGCACTTGGCTACCGCAAA 540
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 AGGAGTTCATGTGGATCCTCTGAATTATCGTGGGGCCCCACTGCACTTGGCTGCCTCAAA 511
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 TGACCATGATCAGGTTGCGAAGGTTCTGCTTGAGCATGGTGCTGATCCCAACAGAGTTGT 600
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 GGACCGGGTTCAAGCCATGAAGGTTCTGCTTGAACATGGTGCTGATCCCAACAGAGTTGT 571
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 CAACCATGTCCTTTCACCACTCGTTGTTGCTTGCTGCAGCCACTCCTTGAAATGCATGAA 660
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 CAATCATATCTTTTCACCACTCATGATGGCATGCTGCGGGCACTCCTTGAAATGCGTGAA 631
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 GTTACTGATCAAGGCTGGTGCTGATGTGAATGATAGAAGTTCTACTGGACCAAGAACGAC 720
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 GCTACTTGTTGAGGCTGGCGCTGATGTGAACGGGGCTGGAGCTGACC------------- 678
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 CCCTTTAGTGCTTGCAGTTGATGATGGATCAGCCGATATTGTCAAAATCTTGCTAGAGGC 780
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 ------------------------------------------------------------
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 TGGAGCTGACCCTAACATTCGTAACGAGTGGGAGGATTCCTATCATGATGGCAGCAGCTC 840
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 ---------CTAACATTCCTGACGAGGAAGGGAGGATTCCTATCATGGTGGCAGCAGCTC 729
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 GTGGTCAACGAGAGCTTGTTGAAATTCTGTTTCCTAGGACAAAACCAATTCCATGT-CTG 899
consensus_11969#2 -----------------------------------------------ATTCCATGTTCTC 13
consensus_11969#1 GTGGTCAACGAGAGCTTGTTGAAATTCTATTTCCTCGGACAAAACCTATTCCATGT-CTG 788
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 CCAGATTGGAGTGTT---GATGGGATAATT--AGAACTAT--GAGATTCACACGTACCGA 952
consensus_11969#2 CCAGATTTGGATTTTTTNAATGGGATTANTTTAGAACTTTTGAGAATCCACACGTACCGA 73
consensus_11969#1 CCAGATTGGAATGTT---GACGGGATAATT--AGAACTAT--GAGAACCACACGTATTGA 841
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 -------------------------------------------------TTTTTTTTTGG 11
consensus_11969#0 ACCTGAGG--ATGC-AGTTCC-TGTGGAAATACTAGTATCTGATT-CGAAGTTAAATGCC 1007
consensus_11969#2 ACCTGGAGGAATGCCAGTTCCCTGTGNAAANACTAGTATCTGATTTCGAANTTAAATGCC 133
consensus_11969#1 ACCTCAGT--CTGCTA-TTCC-TGTGGAAGAACAAGTGTCTGATG-CAAAGTCGAAAGGA 896
consensus_11969#3 ------------------------------------------------------------
consensus_11969#4 AGGCGAGCATCTCCCATTGATTCGGCAAGGTGCGATCGTGTGGTG----TACTGGTTTGC 67
consensus_11969#0 -AAGGAAGCATTTGCAGAGGGTGAATACATTACAGCAATCTACTTCTA-CACCAAGGCAC 1065
consensus_11969#2 CAAGGAAGCTTTGNCAGAGGTTGATTACATTACANCATTCTACTTCTAACACCAGGNCAC 193
consensus_11969#1 -AAGGAAGCATTTGCAAAGGGTGACTACCTTACAGCCATCTACTTCTA-CACCCTGGCAA 954
consensus_11969#3 ------TTTTTTTTTTTTTGGGGGGGATGACGAATTCGGGTATTGATTTCGTACGGTTTG 54
consensus_11969#4 AATGCACGATTCCGGATGTGGGGGGAAATCTGGGGT-GGTTGCAGCTGCGATGTTCTCTG 126
* * * * * *
consensus_11969#0 TGGAAAAAGCCCCACTTGATGCC-ACCTTGTTCGCCAACCGCAGCCTCTGCTGGCTGCGG 1124
consensus_11969#2 TGGAAAAAGCCCCACTTGATGCCCACNTTGTTCGCCAACCGCAGCNTCTGCTGGCTNCGG 253
consensus_11969#1 TGGATAAATCCCCACTTGATGCC-ACCTTGTTTGCCAACCGGAGCCTTTGCTGGCTGCGG 1013
consensus_11969#3 CTGGCTAGTTTAGATGGAAATCC--TCCAATTCGAGGATAGATGGATTGGATTTACTCGA 112
consensus_11969#4 CGCGGTAGCTCATAGCAAAAATC--T---GGGTGGCGATTGACGAATCGGGTG---TTGA 178
* * * * * * * * * * * *
consensus_11969#0 CTGCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTGCGCCCTGGT 1184
consensus_11969#2 CTNCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTGCGCCCTGGT 313
consensus_11969#1 CAGCGAGAAGGGGACAGAGCTTTACTGGATGCACAGCAGTGCAGGATGCTGCGCCCTGGT 1073
consensus_11969#3 TTTC-TACGG-----TTTGGACTCCCATTTGTGCGGAT-TGCTGAATTAGCTACAGTATA 165
consensus_11969#4 TTTCGTTCTG-----TTTGATCGCTGGTTTAGGTGGAAATACCTAATTGGGGGCTATGTG 233
* * * * * * * *
consensus_11969#0 TGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAG-AGA 1243
consensus_11969#2 TGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAGTAGA 373
consensus_11969#1 TGGTCCAAGGCATGGTACCGTGAGGGCGCAGCTCTCAGTTTCATGAAGGACTACAA-AGG 1132
consensus_11969#3 TTTTCCCCCCTTT------TTTTAATC-TGTTTGATTCACTTACGTGGCTGTGTTGTTCG 218
consensus_11969#4 TATTGCATAGTTTGGAGATTTCTGAAT-TAGCCTTTTGTTTCCCCCAAATTTTCTGTTTG 292
* * * * * * *
consensus_11969#0 AGCGGCGGCGGCTTTC-ACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGA 1302
consensus_11969#2 AGCGGCGGCGGCTTTCCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGA 433
consensus_11969#1 AGCAGTGGACGCATTC-GGGGAGGCACTGAAACTTGACCCCATGAGCGACGAGGTCAAGA 1191
consensus_11969#3 GATT-TTGCTGCTGCTGGTGGA---ATCGATCCTTTGTAGAGATGGCGAAGAAGTTGGAT 274
consensus_11969#4 -ATT-CACTCGCAATCTATCTATCTATCTATCCTGGGTAGAAATGGCCAAGAAGTTGGAC 350
** * * ** * * ** *
consensus_11969#0 TCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGA 1362
consensus_11969#2 TCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGA 493
consensus_11969#1 ACGCGTTAAGGGAGGCGATCGAGTGTCTGAAGAGAGCTGCTTGATCTGAAGATCCGAATA 1251
consensus_11969#3 TTGCGAGGAGTCAAGGACAAGAATGGCCTAAGCGCGCTTCAC-TTCGCTGCAAGCCATGG 333
consensus_11969#4 CTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCAC-TTGGCTGCAAGCTATGG 409
*** * * * ** ** ** * *** * * * *
consensus_11969#0 ACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGA 1422
consensus_11969#2 ACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGA 553
consensus_11969#1 ACCCTTGAGCAGCTACTGC--------------ATCGTCCTTTTGGCCTCACCTCAC--- 1294
consensus_11969#3 GCACCTGGATTGCTGCAAGTTCCTTGTGGAGGAATCGGGCCTT-GATGTCAACT--CGGT 390
consensus_11969#4 GCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTT-GATGTCAACT--CAGG 466
* ** ** * *** * ** * *** ** *
consensus_11969#0 CTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTG-TTTCCCA 1481
consensus_11969#2 CTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTG-TTTCCCA 612
consensus_11969#1 CTGTCAGACTGCT----TCACAT-CTTTCCAC-TGTAACTACCAACGACTAGGTTTTGCA 1348
consensus_11969#3 TGGTCACAAAGGTGAA---ACGCCAGTGTTCTATGCCGCGATCGATGGGAAC--ATTCAG 445
consensus_11969#4 CTCTCACAGAGGTGCGTGCACATCAATGATTTCTCG------------------------ 502
** * * ** *
consensus_11969#0 AACTATCTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTT-TGGTCGAAAAAAAAA 1540
consensus_11969#2 AACTATCTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTT-TGGTCGAAAAAAAAA 671
consensus_11969#1 AACCATGCTGACTGTTTAGCT-ATCTCTGC-TGTCAGAGTACGTATGGCAGGAACATGCA 1406
consensus_11969#3 GTTTTGGGGTACCTTCTTGATCATGGTGGTGACCCGGTGAAACCCGAGGAGAGGGGCTGC 505
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 ACGTAGT--AACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGT 1598
consensus_11969#2 ACGTAGT--AACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGT 729
consensus_11969#1 CTGTCTTTCGGTCAGAAACCATATGGTTTGCTAGGTCATCATCACCCATACATATGCAGT 1466
consensus_11969#3 ACGCCGCTGCACAATGCGGCAGAGAATGGTCTGCTTACTGTGCTCTTCGGTTCACTTGCC 565
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 TTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAGCTGCACTTG 1658
consensus_11969#2 TTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAAAAAAAAAAA 789
consensus_11969#1 TGCACTT---TCTTCCATTTTGTGCGCAACTCATGCAAGTGCAAACTGGCAGTAATAGTA 1523
consensus_11969#3 GGATCTGGATTTTAAGGATGGCTTATATGGCATTTCTTGCATACCAATGACATGATATCT 625
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 TCTTCCCTTTGTGTGCGACTCTAATGCAAGCGCAGACTGGCAGCATGATATTTGTATATG 1718
consensus_11969#2 ------------------------------------------------------------
consensus_11969#1 TATGATATGTAAAGTTCGTCAGT------------------------------------- 1546
consensus_11969#3 GTCTGTGGATTATCTTGGTTGAACCTTTGTGCTAATTTT--------------------- 664
consensus_11969#4 ------------------------------------------------------------
consensus_11969#0 ATATATGTGAAGTCCGGCAGT 1739
consensus_11969#2 ---------------------
consensus_11969#1 ---------------------
consensus_11969#3 ---------------------
consensus_11969#4 ---------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||