|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1197#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2138 fasta sequence
[CTCCACGCCCTAATTCGCCGCCGCCGCTTACTCACCTCCTCGCCTGTCGCCTCTCGGTGCGAGTTCTACTCACCGGCGCCGGCGACGGCGACGACCCTGGTTGGCGGTTGAATCGTCGTCCTCGGCGTGTGATGGTGGTGGCCATGGCGACGAAGGAGGAGGAGGGTGGGCCGTCGAGCCGCGTGCCTCACCTTCCGTGGATGCGGAACCCCGTCGACATCGACTCCTTCTCCGGCTGCCCCGTCGCGCACCTTCCCCGTCTCGATCCCAGGTTGGTGAAGCCATTGCAGAGAATGGGGATAGAATCATTTTTTCCAGTTCAAGTAGCAGCATGGCTGGAAACTATTGGTCCTGGTGCTTTTGAGAGGGATATCTGTATTAACTCCCCAACTGGATCTGGCAAGACTCTTGCTTATGCTTTGCCTATCGTTCAAATGCTCGCTACTCGAAAAGTAAGGTGCTTGCGTGCTTTGGTTGTGCTACCTACAAGGGATTTAGCATTGCAGGTTAAAGAGGTTTTTGATGCTATTGCTCCTGTTGTGGGCTTGTCAGTAGGCTCAGCAGTTGGTCAATCATCAATAGCGGATGAAGTTTCAAATCTTATTGAGAAGTCTAAACAAGGGCTTTTCCCAAGTCTTGATGAAGAATATATCCAAATGGAACCACAGACTAAAGTTGATATATTGGTGGCAACTCCTGGAAGACTGATGGATCATATCAGCATGACAAAAGGTTTCAGCCTGGAGCATCTTCAATACCTGGTTGTTGATGAGACGGACAGGATGTTGAGAGAAGCTTATCAGTCTTGGTTGCCAACAGTTATCCAGCTTACTCGCTCGAGTGATCAAAACCATTCCTGGTCAGACATGAACGGAGAAACTCTACTGCATCCATTGACTACCATTAGACGATCGGGTGTTGAGCGTGGTTTTAAAGGTAAATCCTTTCCAAGATTGGCGAAGATAGTTTTGTCTGCCACACTGACTCAAGATCCTAGCAAGCTTTCTCAACTTGAGTTGCAACATCCCTTGCTGTTGAATAGTGGAAAGAAGCGCTACAGAATTCCAACAAAGCTTCAGTCCTACAAGCTGGTCTGTAAATCAAATTTAAAACCACTATCTCTGATTGTTCTTCTCCAAGAGCTGCGTGGGGAAAAATGTTTAGTTTTTACTTCATCTGTGGAATCCAGTCACAGACTGAGCACCTTGCTGGAATTTTTCGAAGACTTGCCCTTCAAATTTAGTGAATATTCACGTTTGCAACGTGAATCGACTCGGAGGAAGACACTGGATGCCTTCAAGGAAGGGAAGATAGATGTTCTGATTGGTACAGATAGAATGGCTCGAGGAATTCATATTGATGGCTTAAGATATGTTATCAATTATGACATGCCACCGTATGTAAAAACATACATCCACCGAGCAGGTCGTACTGCTCGGGCGGGAGAGTCTGGTTCTTGCTTCACATTTTTAAGGAAACATGAGGTTAAGGCTTTTGACAAAATGCTCAAGAAGGCAGATAATTCTAGCTGCAGTCTTCATTCACTACCAGAGGAATCGGTAGAAACCCTTCGCCCAGTTTTTTCCTCTGCTCTAAAGAAATTGGAAGAGTCTCTTGAATCAGAAGCAACAAAGAAATCTAAGTCGGGAGATAAAGCGCCTAATGCTTCTAAAAGAAAGAGAACCATCAATACGTGAAGCAGTATAGATTAGTTGAAGTTCTAATTTATTCTTTGTATGATGTATCTGCATCTGCTACATAGATTTGGTGATTCTCGCCTATGATAATTCTGCAACAGGCTCAGCATTTAATCATGGATGTCCAAAACAAGAGGGATGGTTTGATGTGTCATGTAATCCATTTGCCGTGCAATCCCCAAGCAGCTTTCCCCATCCCTGCAACCTGCTGCTTATTTTTGGTGCACGGTACAGTAGTTCTCTTCTGCTTTTACACCAGGGAAGGAATTCTTCTTTCCTTCTGTAGTTATAATACATCCACTGCTTTTCATGGCTAGGAAGGAATCTACCCCAAAGTAAAGTTGGGTACGTTCACATCAATGTATCGTCGCTGTTAACCTTTTTGTTAGGCTTTACACTTGAAATATCTATTACTATTACAGTCTCTGTTAGTAATGCGGT]
[+] EMBL AK105305 [CTCCACGCCCTAATTCGCCGCCGCCGCTTACTCACCTCCTCGCCTGTCGCCTCTCGGTGCGAGTTCTACTCACCGGCGCCGGCGACGGCGACGACCCTGGTTGGCGGTTGAATCGTCGTCCTCGGCGTGTGATGGTGGTGGCCATGGCGACGAAGGAGGAGGAGGGTGGGCCGTCGAGCCGCGTGCCTCACCTTCCGTGGATGCGGAACCCCGTCGACATCGACTCCTTCTCCGGCTGCCCCGTCGCGCACCTTCCCCGTCTCGATCCCAGGTTGGTGAAGCCATTGCAGAGAATGGGGATAGAATCATTTTTTCCAGTTCAAGTAGCAGCATGGCTGGAAACTATTGGTCCTGGTGCTTTTGAGAGGGATATCTGTATTAACTCCCCAACTGGATCTGGCAAGACTCTTGCTTATGCTTTGCCTATCGTTCAAATGCTCGCTACTCGAAAAGTAAGGTGCTTGCGTGCTTTGGTTGTGCTACCTACAAGGGATTTAGCATTGCAGGTTAAAGAGGTTTTTGATGCTATTGCTCCTGTTGTGGGCTTGTCAGTAGGCTCAGCAGTTGGTCAATCATCAATAGCGGATGAAGTTTCAAATCTTATTGAGAAGTCTAAACAAGGGCTTTTCCCAAGTCTTGATGAAGAATATATCCAAATGGAACCACAGACTAAAGTTGATATATTGGTGGCAACTCCTGGAAGACTGATGGATCATATCAGCATGACAAAAGGTTTCAGCCTGGAGCATCTTCAATACCTGGTTGTTGATGAGACGGACAGGATGTTGAGAGAAGCTTATCAGTCTTGGTTGCCAACAGTTATCCAGCTTACTCGCTCGAGTGATCAAAACCATTCCTGGTCAGACATGAACGGAGAAACTCTACTGCATCCATTGACTACCATTAGACGATCGGGTGTTGAGCGTGGTTTTAAAGGTAAATCCTTTCCAAGATTGGCGAAGATAGTTTTGTCTGCCACACTGACTCAAGATCCTAGCAAGCTTTCTCAACTTGAGTTGCAACATCCCTTGCTGTTGAATAGTGGAAAGAAGCGCTACAGAATTCCAACAAAGCTTCAGTCCTACAAGCTGGTCTGTAAATCAAATTTAAAACCACTATCTCTGATTGTTCTTCTCCAAGAGCTGCGTGGGGAAAAATGTTTAGTTTTTACTTCATCTGTGGAATCCAGTCACAGACTGAGCACCTTGCTGGAATTTTTCGAAGACTTGCCCTTCAAATTTAGTGAATATTCACGTTTGCAACGTGAATCGACTCGGAGGAAGACACTGGATGCCTTCAAGGAAGGGAAGATAGATGTTCTGATTGGTACAGATAGAATGGCTCGAGGAATTCATATTGATGGCTTAAGATATGTTATCAATTATGACATGCCACCGTATGTAAAAACATACATCCACCGAGCAGGTCGTACTGCTCGGGCGGGAGAGTCTGGTTCTTGCTTCACATTTTTAAGGAAACATGAGGTTAAGGCTTTTGACAAAATGCTCAAGAAGGCAGATAATTCTAGCTGCAGTCTTCATTCACTACCAGAGGAATCGGTAGAAACCCTTCGCCCAGTTTTTTCCTCTGCTCTAAAGAAATTGGAAGAGTCTCTTGAATCAGAAGCAACAAAGAAATCTAAGTCGGGAGATAAAGCGCCTAATGCTTCTAAAAGAAAGAGAACCATCAATACGTGAAGCAGTATAGATTAGTTGAAGTTCTAATTTATTCTTTGTATGATGTATCTGCATCTGCTACATAGATTTGGTGATTCTCGCCTATGATAATTCTGCAACAGGCTCAGCATTTAATCATGGATGTCCAAAACAAGAGGGATGGTTTGATGTGTCATGTAATCCATTTGCCGTGCAATCCCCAAGCAGCTTTCCCCATCCCTGCAACCTGCTGCTTATTTTTGGTGCACGGTACAGTAGTTCTCTTCTGCTTTTACACCAGGGAAGGAATTCTTCTTTCCTTCTGTAGTTATAATACATCCACTGCTTTTCATGGCTAGGAAGGAATCTACCCCAAAGTAAAGTTGGGTACGTTCACATCAATGTATCGTCGCTGTTAACCTTTTTGTTAGGCTTTACACTTGAAATATCTATTACTATTACAGTCTCTGTTAGTAATGCGGT]
consensusID : consensus_1197#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[CTTCATTCACTACCAGAGGAATCGGTAGAAACCCTTCGCCCAGTTTTTTCCTCTGCTCTAAAGAAATAGGAAGAGTCTCTTGAATCAGAAGCAACAAAGAAATTTAAGTTGGGAGATAAAGCGCCTAATGCTTCTAAAAGAAAGAGAACCATCAATACGTGAAGCAGTATAGATTAGTTGAAGTTCTAATTTATTCTTTGTATGAGGTATCTGCATCTGCTACATAGATTTGTGATTCCAATGCTGTCTCCTTTAGGTGATTCTCGCCTATGATAATTTTGCAACAGGCTCAGCATTTAATCATGGATGTCCAAAACAAGAGGGATGGTTTGATGTGTCATGTAATCCATTTGCCGTACAATCCCCAAGCAGCTTTCCCCATCCCTGCAACCTGCTGCTTATTTTTGGTGCACGGTACAGTAGTTTTTTCCTGCCTTTACCCCAGGGAAGGAATTTTTCTTTCCTTCTGTAGTTATAATACATCCCCTGCTTTTCATGGCTAGGAAGGAATTTACCCCAAAGTAAAGTTGGGTACGTTCACATCAATGTATTGTCGCTGTTAACCTTTTTGTTAGGCTTTACCCTTGAAATATCTATTACTATTACAGTCTCTGTTAGTAATGCGGTTTGTTAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761765 [CTTCATTCACTACCAGAGGAATCGGTAGAAACCCTTCGCCCAGTTTTTTCCTCTGCTCTAAAGAAATAGGAAGAGTCTCTTGAATCAGAAGCAACAAAGAAATTTAAGTTGGGAGATAAAGCGCCTAATGCTTCTAAAAGAAAGAGAACCATCAATACGTGAAGCAGTATAGATTAGTTGAAGTTCTAATTTATTCTTTGTATGAGGTATCTGCATCTGCTACATAGATTTGTGATTCCAATGCTGTCTCCTTTAGGTGATTCTCGCCTATGATAATTTTGCAACAGGCTCAGCATTTAATCATGGATGTCCAAAACAAGAGGGATGGTTTGATGTGTCATGTAATCCATTTGCCGTACAATCCCCAAGCAGCTTTCCCCATCCCTGCAACCTGCTGCTTATTTTTGGTGCACGGTACAGTAGTTTTTTCCTGCCTTTACCCCAGGGAAGGAATTTTTCTTTCCTTCTGTAGTTATAATACATCCCCTGCTTTTCATGGCTAGGAAGGAATTTACCCCAAAGTAAAGTTGGGTACGTTCACATCAATGTATTGTCGCTGTTAACCTTTTTGTTAGGCTTTACCCTTGAAATATCTATTACTATTACAGTCTCTGTTAGTAATGCGGTTTGTTAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1197#0 CTCCACGCCCTAATTCGCCGCCGCCGCTTACTCACCTCCTCGCCTGTCGCCTCTCGGTGC 60
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 GAGTTCTACTCACCGGCGCCGGCGACGGCGACGACCCTGGTTGGCGGTTGAATCGTCGTC 120
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 CTCGGCGTGTGATGGTGGTGGCCATGGCGACGAAGGAGGAGGAGGGTGGGCCGTCGAGCC 180
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 GCGTGCCTCACCTTCCGTGGATGCGGAACCCCGTCGACATCGACTCCTTCTCCGGCTGCC 240
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 CCGTCGCGCACCTTCCCCGTCTCGATCCCAGGTTGGTGAAGCCATTGCAGAGAATGGGGA 300
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 TAGAATCATTTTTTCCAGTTCAAGTAGCAGCATGGCTGGAAACTATTGGTCCTGGTGCTT 360
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 TTGAGAGGGATATCTGTATTAACTCCCCAACTGGATCTGGCAAGACTCTTGCTTATGCTT 420
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 TGCCTATCGTTCAAATGCTCGCTACTCGAAAAGTAAGGTGCTTGCGTGCTTTGGTTGTGC 480
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 TACCTACAAGGGATTTAGCATTGCAGGTTAAAGAGGTTTTTGATGCTATTGCTCCTGTTG 540
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 TGGGCTTGTCAGTAGGCTCAGCAGTTGGTCAATCATCAATAGCGGATGAAGTTTCAAATC 600
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 TTATTGAGAAGTCTAAACAAGGGCTTTTCCCAAGTCTTGATGAAGAATATATCCAAATGG 660
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 AACCACAGACTAAAGTTGATATATTGGTGGCAACTCCTGGAAGACTGATGGATCATATCA 720
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 GCATGACAAAAGGTTTCAGCCTGGAGCATCTTCAATACCTGGTTGTTGATGAGACGGACA 780
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 GGATGTTGAGAGAAGCTTATCAGTCTTGGTTGCCAACAGTTATCCAGCTTACTCGCTCGA 840
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 GTGATCAAAACCATTCCTGGTCAGACATGAACGGAGAAACTCTACTGCATCCATTGACTA 900
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 CCATTAGACGATCGGGTGTTGAGCGTGGTTTTAAAGGTAAATCCTTTCCAAGATTGGCGA 960
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 AGATAGTTTTGTCTGCCACACTGACTCAAGATCCTAGCAAGCTTTCTCAACTTGAGTTGC 1020
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 AACATCCCTTGCTGTTGAATAGTGGAAAGAAGCGCTACAGAATTCCAACAAAGCTTCAGT 1080
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 CCTACAAGCTGGTCTGTAAATCAAATTTAAAACCACTATCTCTGATTGTTCTTCTCCAAG 1140
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 AGCTGCGTGGGGAAAAATGTTTAGTTTTTACTTCATCTGTGGAATCCAGTCACAGACTGA 1200
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 GCACCTTGCTGGAATTTTTCGAAGACTTGCCCTTCAAATTTAGTGAATATTCACGTTTGC 1260
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 AACGTGAATCGACTCGGAGGAAGACACTGGATGCCTTCAAGGAAGGGAAGATAGATGTTC 1320
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 TGATTGGTACAGATAGAATGGCTCGAGGAATTCATATTGATGGCTTAAGATATGTTATCA 1380
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 ATTATGACATGCCACCGTATGTAAAAACATACATCCACCGAGCAGGTCGTACTGCTCGGG 1440
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 CGGGAGAGTCTGGTTCTTGCTTCACATTTTTAAGGAAACATGAGGTTAAGGCTTTTGACA 1500
consensus_1197#1 ------------------------------------------------------------
consensus_1197#0 AAATGCTCAAGAAGGCAGATAATTCTAGCTGCAGTCTTCATTCACTACCAGAGGAATCGG 1560
consensus_1197#1 -----------------------------------CTTCATTCACTACCAGAGGAATCGG 25
*************************
consensus_1197#0 TAGAAACCCTTCGCCCAGTTTTTTCCTCTGCTCTAAAGAAATTGGAAGAGTCTCTTGAAT 1620
consensus_1197#1 TAGAAACCCTTCGCCCAGTTTTTTCCTCTGCTCTAAAGAAATAGGAAGAGTCTCTTGAAT 85
****************************************** *****************
consensus_1197#0 CAGAAGCAACAAAGAAATCTAAGTCGGGAGATAAAGCGCCTAATGCTTCTAAAAGAAAGA 1680
consensus_1197#1 CAGAAGCAACAAAGAAATTTAAGTTGGGAGATAAAGCGCCTAATGCTTCTAAAAGAAAGA 145
****************** ***** ***********************************
consensus_1197#0 GAACCATCAATACGTGAAGCAGTATAGATTAGTTGAAGTTCTAATTTATTCTTTGTATGA 1740
consensus_1197#1 GAACCATCAATACGTGAAGCAGTATAGATTAGTTGAAGTTCTAATTTATTCTTTGTATGA 205
************************************************************
consensus_1197#0 TGTATCTGCATCTGCTACATAGATTTG------------------------GTGATTCTC 1776
consensus_1197#1 GGTATCTGCATCTGCTACATAGATTTGTGATTCCAATGCTGTCTCCTTTAGGTGATTCTC 265
************************** *********
consensus_1197#0 GCCTATGATAATTCTGCAACAGGCTCAGCATTTAATCATGGATGTCCAAAACAAGAGGGA 1836
consensus_1197#1 GCCTATGATAATTTTGCAACAGGCTCAGCATTTAATCATGGATGTCCAAAACAAGAGGGA 325
************* **********************************************
consensus_1197#0 TGGTTTGATGTGTCATGTAATCCATTTGCCGTGCAATCCCCAAGCAGCTTTCCCCATCCC 1896
consensus_1197#1 TGGTTTGATGTGTCATGTAATCCATTTGCCGTACAATCCCCAAGCAGCTTTCCCCATCCC 385
******************************** ***************************
consensus_1197#0 TGCAACCTGCTGCTTATTTTTGGTGCACGGTACAGTAGTTCTCTTCTGCTTTTACACCAG 1956
consensus_1197#1 TGCAACCTGCTGCTTATTTTTGGTGCACGGTACAGTAGTTTTTTCCTGCCTTTACCCCAG 445
**************************************** * * **** ***** ****
consensus_1197#0 GGAAGGAATTCTTCTTTCCTTCTGTAGTTATAATACATCCACTGCTTTTCATGGCTAGGA 2016
consensus_1197#1 GGAAGGAATTTTTCTTTCCTTCTGTAGTTATAATACATCCCCTGCTTTTCATGGCTAGGA 505
********** ***************************** *******************
consensus_1197#0 AGGAATCTACCCCAAAGTAAAGTTGGGTACGTTCACATCAATGTATCGTCGCTGTTAACC 2076
consensus_1197#1 AGGAATTTACCCCAAAGTAAAGTTGGGTACGTTCACATCAATGTATTGTCGCTGTTAACC 565
****** *************************************** *************
consensus_1197#0 TTTTTGTTAGGCTTTACACTTGAAATATCTATTACTATTACAGTCTCTGTTAGTAATGCG 2136
consensus_1197#1 TTTTTGTTAGGCTTTACCCTTGAAATATCTATTACTATTACAGTCTCTGTTAGTAATGCG 625
***************** ******************************************
consensus_1197#0 GT---------------------------- 2138
consensus_1197#1 GTTTGTTAAAAAAAAAAAAAAAAAAAAAAA 655
**
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||