cluster # 11988

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11988 cluster # 11988 Sequences # 9 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11988#0 length = 627 sequences # 1
consensus_11988#1 length = 599 sequences # 1
consensus_11988#2 length = 597 sequences # 2

consensus_11988#3 length = 571 sequences # 3
consensus_11988#4 length = 486 sequences # 1
consensus_11988#5 length = 440 sequences # 1

consensusID : consensus_11988#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [TCAATTTTCAAATACAATGTTCGCTCAATTATTAGTCCTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATTCATCGAAAACATCATCGGCTGAAAACAATATAATATTTTCATATACATAAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATAAATCTGTGTGTTAATAATCTTTTTCAATTTTTCTATCGATTAACGTAATTAAAATAAAATATTATTGAATACATAANANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAACAAAAAAAAAAAAAACAAAAAAAAAACNNACCCCTCCCAAAAAAAAAAAAAAAAAAACACCCAAAACACCCCTNCCCCACCNNACNNCCTCCCCCCCCCCCCCCCCCTTTTTTTCCCCCCTTCTCCCCCTCCTCCCTTTCCCTCTTAATATATTACCCCACTTCCTCCCTTTTCCA]

[+] EMBL CA753825             [TCAATTTTCAAATACAATGTTCGCTCAATTATTAGTCCTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATTCATCGAAAACATCATCGGCTGAAAACAATATAATATTTTCATATACATAAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATAAATCTGTGTGTTAATAATCTTTTTCAATTTTTCTATCGATTAACGTAATTAAAATAAAATATTATTGAATACATAANANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAACAAAAAAAAAAAAAACAAAAAAAAAACNNACCCCTCCCAAAAAAAAAAAAAAAAAAACACCCAAAACACCCCTNCCCCACCNNACNNCCTCCCCCCCCCCCCCCCCCTTTTTTTCCCCCCTTCTCCCCCTCCTCCCTTTCCCTCTTAATATATTACCCCACTTCCTCCCTTTTCCA]




>consensus_11988#0
TCAATTTTCAAATACAATGTTCGCTCAATTATTAGTCCTCCTCGCCTTATTGGTTGCCCT
CCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTT
CGGTGGATGGGGTCTTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCG
ATAAAAAGTTTACTTTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATTCATC
GAAAACATCATCGGCTGAAAACAATATAATATTTTCATATACATAAAACGACGAAGTGAT
TCACACATTTTTTCATTTTCTGTAAATGCCGATAAATCTGTGTGTTAATAATCTTTTTCA
ATTTTTCTATCGATTAACGTAATTAAAATAAAATATTATTGAATACATAANANAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAACCAAACAAAAAAAAAAAAAACAAAAAAAAAACNN
ACCCCTCCCAAAAAAAAAAAAAAAAAAACACCCAAAACACCCCTNCCCCACCNNACNNCC
TCCCCCCCCCCCCCCCCCTTTTTTTCCCCCCTTCTCCCCCTCCTCCCTTTCCCTCTTAAT
ATATTACCCCACTTCCTCCCTTTTCCA

consensusID : consensus_11988#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [TCTACATTTCAAATTCAATTTTCAAATACAATGTTCGCTCAATTATTAGTCGTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATCCATCAAAAACAACATCAAACAATCAAACAATCGGCTTTGAATAAATATTCTCGTATACACAAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATNAATTTGTGTTGATAAATTTCTTAATTTTTCTAATAACTCACTGAATTTAAATAAAATACTATTGAATACNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA756285             [TCTACATTTCAAATTCAATTTTCAAATACAATGTTCGCTCAATTATTAGTCGTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATCCATCAAAAACAACATCAAACAATCAAACAATCGGCTTTGAATAAATATTCTCGTATACACAAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATNAATTTGTGTTGATAAATTTCTTAATTTTTCTAATAACTCACTGAATTTAAATAAAATACTATTGAATACNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_11988#1
TCTACATTTCAAATTCAATTTTCAAATACAATGTTCGCTCAATTATTAGTCGTCCTCGCC
TTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGT
TGGGGTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGTTATCCATATGGTCTTGGCTTC
GGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGTAGTAAACAATTTGTGTATATGTAATA
TTTAATGATCCATCAAAAACAACATCAAACAATCAAACAATCGGCTTTGAATAAATATTC
TCGTATACACAAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATN
AATTTGTGTTGATAAATTTCTTAATTTTTCTAATAACTCACTGAATTTAAATAAAATACT
ATTGAATACNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensusID : consensus_11988#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 597
fasta sequence

                              [CTCTCTCTCTCTCTCTCTCTCTCTCTCCACTTTCTACATTTCAAATTCAATTTTCAAACACAATGTTTGCTCAATTATTAGTCGTTCTTGCTTTATTGGTTGCCCTCCTCGCAACAGTCTCAGAAGCTTGGTGGGGTCTCGGATACGGTGGGTGGGGTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGATATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGCAGTAAATAATTTGTGTATATGTAATATTCAAGAATTTCTCGGAGCCAACATCGGACTATCATCGACCTGAACGAATATTTTCATATACATAAAACGACGAAGTGATTCACACATTTTTTTCATTTTCTGTAAATGCCGATAAATCTGTGTGCTAATAATCTTTTTCAATTTTTCTATCGATTAACATAATTTAAATAACATATCATTGAAATACCTACAAAAAAACACAAAAAAACCCAAAAAAAACCCCGGGGGGCGCTTGTCCCTTTTAAGCTACTCATCCCCCTCCATATAGCTGCGTGCGCCGCACGAAGAAACAAAAGTTTCTTCACTAAAAAAAACCACAAGGGG]

[+] EMBL CA756224             [CTCTCTCTCTCTCTCTCTCTCTCTCTCCACTTTCTACATTTCAAATTCAATTTTCAAACACAATGTTTGCTCAATTATTAGTCGTTCTTGCTTTATTGGTTGCCCTCCTCGCAACAGTCTCAGAAGCTTGGTGGGGTCTCGGATACGGTGGGTGGGGTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGATATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGCAGTAAATAATTTGTGTATATGTAATATTCAAGAATTTCTCGGAGCCAACATCGGACTATCATCGACCTGAACGAATATTTTCATATACATAAAACGACGAAGTGATTCACACATTTTTTTCATTTTCTGTAAATGCCGATAAATCTGTGTGCTAATAATCTTTTTCAATTTTTCTATCGATTAACATAATTTAAATAACATATCATTGAAATACCTACAAAAAAACACAAAAAAACCCAAAAAAAACCCCGGGGGGCGCTTGTCCCTTTTAAGCTACTCATCCCCCTCCATATAGCTGCGTGCGCCGCACGAAGAAACAAAAGTTTCTTCACTAAAAAAAACCACAAGGGG]
[+] EMBL CA754932             [                             CTTTCTACATTTCAAATTCAATTTTCAAACACAATGTTTGCTCAATTATTAGTCGTCCTTGCTTTATTGGTTGCCCTCCTCGCAACAGTCTCAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGCAGTAAACAATTTGTGTATATGTAATATTCAAGAATTTCTCGGAGCCNACATCGGACTAACATCGACCTGAACGAATATTTTCATATACATAAGACGACGAAGTGATTCACACATTTTTTTCATTTTCTGTAAATGCCGATAAATCTGTGTGCTAATAATCTTTTTCAATTTTTCTATCGATTAACATAATTTAAATAAAATATCATTGAAATACATAAAAAAAA                                                                                                                               ]




>consensus_11988#2
CTCTCTCTCTCTCTCTCTCTCTCTCTCCACTTTCTACATTTCAAATTCAATTTTCAAACA
CAATGTTTGCTCAATTATTAGTCGTTCTTGCTTTATTGGTTGCCCTCCTCGCAACAGTCT
CAGAAGCTTGGTGGGGTCTCGGATACGGTGGGTGGGGTCTCGGCTTCGGTGGATGGGGTC
TTGGCTTCGGATATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACT
TTCTGCAGTAAATAATTTGTGTATATGTAATATTCAAGAATTTCTCGGAGCCAACATCGG
ACTATCATCGACCTGAACGAATATTTTCATATACATAAAACGACGAAGTGATTCACACAT
TTTTTTCATTTTCTGTAAATGCCGATAAATCTGTGTGCTAATAATCTTTTTCAATTTTTC
TATCGATTAACATAATTTAAATAACATATCATTGAAATACCTACAAAAAAACACAAAAAA
ACCCAAAAAAAACCCCGGGGGGCGCTTGTCCCTTTTAAGCTACTCATCCCCCTCCATATA
GCTGCGTGCGCCGCACGAAGAAACAAAAGTTTCTTCACTAAAAAAAACCACAAGGGG

consensusID : consensus_11988#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 571
fasta sequence

                              [CAGGAATTCGGCACGAGTCTACATTTCAAATTCAATTTTCAAATACAATGTTCGCTCAATTATTAGTCGTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCT-TGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATCCATCAAAAACAACATCAAACAATCAAACAATCGGCTTTGAATAAATATTCTCGTATACACAAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATAAATTTGTGTTGATAAATTTCTTAATTTTTCTAATAACTCACTGAATTTAAATAAAATACTATTGAATACATAAACAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL BE039216             [CAGGAATTCGGCACGAGTCTACATTTCAAATTCAATTTTCAAATACAATGTTCGCTCAATTATTAGTCGTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCTNTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATCCATCAAAAACAACATCAAACAATCAAACAATCGGCTTTGAATAAATATTCTCGTATACACAAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATAAATTTGTGTTGATAAATTTCTTAATTTTTCTAATAACTCACTGAATTTAAATAAAATACTATTGAATACATAAACAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL CA756151             [                 TCTACATTTCAAATTCAA TTTCAAATACAATGTTCGCTCAATTATTAGTCCTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCT TGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGCAGTAAACAATTTGTGTATATGTAATATTTAATGATCCATCAAAAACAACATCAAACAATCAAACAATCGGCTTTGAATAAATATTCTCGTATACACAAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATAAATTTGTGTTGATAAATTTCTTAATTTTTCTAATAACTCACTGAATTTAAATAAAATACTATTGAATACATAAACAAAAAAAAAA                                                                                                             ]
[+] EMBL CA754945             [                  CTACATTTCAAATTCAATTTTCAAATACAATGTTCGCTCAATTATTAGTCGTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCT TGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATCCATCAAAAACAACATCAAACAATCAAACAATCGGCTTTGAATAAATATTCTCGTATACACAAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATAAATTTGTGTTGATAAATTTCTTAATTTTTCTAATAACTCACTGAATTTAAATAAAATACTATTGAATACATAAACAAAAAAAAA                                                                                                              ]




>consensus_11988#3
CAGGAATTCGGCACGAGTCTACATTTCAAATTCAATTTTCAAATACAATGTTCGCTCAAT
TATTAGTCGTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGG
GTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGTTATC
CATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGTAGTAAACAA
TTTGTGTATATGTAATATTTAATGATCCATCAAAAACAACATCAAACAATCAAACAATCG
GCTTTGAATAAATATTCTCGTATACACAAAACGACGAAGTGATTCACACATTTTTTCATT
TTCTGTAAATGCCGATAAATTTGTGTTGATAAATTTCTTAATTTTTCTAATAACTCACTG
AATTTAAATAAAATACTATTGAATACATAAACAAAAAAAAAAAAAAAAAAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensusID : consensus_11988#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [AAATTCAATTTTCAAATACAATGTTCGCTCAATTATTAGTCGTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATCCATCAAAAACAACATCAAACAATCAAACAATCGGCTTTGAATAAATATTCTCGTATACACAAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATAAATTTGTGTTGATAAATTTCTTAATTTTTCTAATAACTCACTGAATTTACATAAAATACTATTGAATACATACGCCAAAGAGAAGCGCCTCGACAGCGCCTCCCTGTCTTATAAGTGAAAAGAGAGAAAATTCGAA]

[+] EMBL CA754898             [AAATTCAATTTTCAAATACAATGTTCGCTCAATTATTAGTCGTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATCCATCAAAAACAACATCAAACAATCAAACAATCGGCTTTGAATAAATATTCTCGTATACACAAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATAAATTTGTGTTGATAAATTTCTTAATTTTTCTAATAACTCACTGAATTTACATAAAATACTATTGAATACATACGCCAAAGAGAAGCGCCTCGACAGCGCCTCCCTGTCTTATAAGTGAAAAGAGAGAAAATTCGAA]




>consensus_11988#4
AAATTCAATTTTCAAATACAATGTTCGCTCAATTATTAGTCGTCCTCGCCTTATTGGTTG
CCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCG
GCTTCGGTGGATGGGGTCTTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGG
GTCGATAAAAAGTTTACTTTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATC
CATCAAAAACAACATCAAACAATCAAACAATCGGCTTTGAATAAATATTCTCGTATACAC
AAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATAAATTTGTGTT
GATAAATTTCTTAATTTTTCTAATAACTCACTGAATTTACATAAAATACTATTGAATACA
TACGCCAAAGAGAAGCGCCTCGACAGCGCCTCCCTGTCTTATAAGTGAAAAGAGAGAAAA
TTCGAA

consensusID : consensus_11988#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [ACATTTCAAATTCAATTTCAAATACAATGTTCGCTCAATTATTAGTCCTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGCAGTAAATAATTTGTGTATATGTAATATTTAATGATTCATCGAAAACATCATCGGCCAAAAACAATATAATATTTTCATATACATAAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATAAATCTGTGTGTTAATAATCTTTCACAATTTTTCTATCGATTAACGTAATTAAAATAAAATACTATTGAATACNTNGNNNGNAACTACNGGGGAAAA]

[+] EMBL CA756116             [ACATTTCAAATTCAATTTCAAATACAATGTTCGCTCAATTATTAGTCCTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACTTTCTGCAGTAAATAATTTGTGTATATGTAATATTTAATGATTCATCGAAAACATCATCGGCCAAAAACAATATAATATTTTCATATACATAAAACGACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATAAATCTGTGTGTTAATAATCTTTCACAATTTTTCTATCGATTAACGTAATTAAAATAAAATACTATTGAATACNTNGNNNGNAACTACNGGGGAAAA]




>consensus_11988#5
ACATTTCAAATTCAATTTCAAATACAATGTTCGCTCAATTATTAGTCCTCCTCGCCTTAT
TGGTTGCCCTCCTCGCAACAGTCACAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGG
GTCTCGGCTTCGGTGGATGGGGTCTTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTC
TCTGGGGTCGATAAAAAGTTTACTTTCTGCAGTAAATAATTTGTGTATATGTAATATTTA
ATGATTCATCGAAAACATCATCGGCCAAAAACAATATAATATTTTCATATACATAAAACG
ACGAAGTGATTCACACATTTTTTCATTTTCTGTAAATGCCGATAAATCTGTGTGTTAATA
ATCTTTCACAATTTTTCTATCGATTAACGTAATTAAAATAAAATACTATTGAATACNTNG
NNNGNAACTACNGGGGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11988#0      ----------------------------------------------TCAATTTTCAAATA 14
consensus_11988#5      ------------------------------------ACATTTCAAATTCAATTTCAAATA 24
consensus_11988#2      CTCTCTCTCTCTCTCTCTCTCTCTCTCCACTTTCTACATTTCAAATTCAATTTTCAAACA 60
consensus_11988#1      --------------------------------TCTACATTTCAAATTCAATTTTCAAATA 28
consensus_11988#3      ---------------CAGGAATTCGGCACGAGTCTACATTTCAAATTCAATTTTCAAATA 45
consensus_11988#4      ------------------------------------------AAATTCAATTTTCAAATA 18
                                                                     *  * ******* *

consensus_11988#0      CAATGTTCGCTCAATTATTAGTCCTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCA 74
consensus_11988#5      CAATGTTCGCTCAATTATTAGTCCTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCA 84
consensus_11988#2      CAATGTTTGCTCAATTATTAGTCGTTCTTGCTTTATTGGTTGCCCTCCTCGCAACAGTCT 120
consensus_11988#1      CAATGTTCGCTCAATTATTAGTCGTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCA 88
consensus_11988#3      CAATGTTCGCTCAATTATTAGTCGTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCA 105
consensus_11988#4      CAATGTTCGCTCAATTATTAGTCGTCCTCGCCTTATTGGTTGCCCTCCTCGCAACAGTCA 78
                       ******* *************** * ** ** *************************** 

consensus_11988#0      CAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTC 134
consensus_11988#5      CAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTC 144
consensus_11988#2      CAGAAGCTTGGTGGGGTCTCGGATACGGTGGGTGGGGTCTCGGCTTCGGTGGATGGGGTC 180
consensus_11988#1      CAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTC 148
consensus_11988#3      CAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTC 165
consensus_11988#4      CAGAAGCTTGGTGGGGTCTCGGATACGGTGGTTGGGGTCTCGGCTTCGGTGGATGGGGTC 138
                       ******************************* ****************************

consensus_11988#0      TTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACT 194
consensus_11988#5      TTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACT 204
consensus_11988#2      TTGGCTTCGGATATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACT 240
consensus_11988#1      TTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACT 208
consensus_11988#3      TTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACT 225
consensus_11988#4      TTGGCTTCGGTTATCCATATGGTCTTGGCTTCGGTCTCTGGGGTCGATAAAAAGTTTACT 198
                       ********** *************************************************

consensus_11988#0      TTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATTCATCGAAAACATCATCGG 254
consensus_11988#5      TTCTGCAGTAAATAATTTGTGTATATGTAATATTTAATGATTCATCGAAAACATCATCGG 264
consensus_11988#2      TTCTGCAGTAAATAATTTGTGTATATGTAATATTCAAGAATTTCTCGGAGCCAACATCGG 300
consensus_11988#1      TTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATCCATCAAAAACAACATCAA 268
consensus_11988#3      TTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATCCATCAAAAACAACATCAA 285
consensus_11988#4      TTCTGTAGTAAACAATTTGTGTATATGTAATATTTAATGATCCATCAAAAACAACATCAA 258
                       ***** ****** ********************* **  **   **  *  ** ****  

consensus_11988#0      -CTGAAAA-CAATA-----T-----AATATTTTCATATACATAAAACGACGAAGTGATTC 302
consensus_11988#5      -CCAAAAA-CAATA-----T-----AATATTTTCATATACATAAAACGACGAAGTGATTC 312
consensus_11988#2      ACTATCAT-CGACC-----TGAACGAATATTTTCATATACATAAAACGACGAAGTGATTC 354
consensus_11988#1      ACAATCAAACAATCGGCTTTGAATAAATATTCTCGTATACACAAAACGACGAAGTGATTC 328
consensus_11988#3      ACAATCAAACAATCGGCTTTGAATAAATATTCTCGTATACACAAAACGACGAAGTGATTC 345
consensus_11988#4      ACAATCAAACAATCGGCTTTGAATAAATATTCTCGTATACACAAAACGACGAAGTGATTC 318
                        *    *  * *       *     ****** ** ****** ******************

consensus_11988#0      ACACATTTTTT-CATTTTCTGTAAATGCCGATAAATCTGTGTGTTAATAATCTTTTTCAA 361
consensus_11988#5      ACACATTTTTT-CATTTTCTGTAAATGCCGATAAATCTGTGTGTTAATAATCTTTCACAA 371
consensus_11988#2      ACACATTTTTTTCATTTTCTGTAAATGCCGATAAATCTGTGTGCTAATAATCTTTTTCAA 414
consensus_11988#1      ACACATTTTTT-CATTTTCTGTAAATGCCGATNAATTTGTGT--TGATAAA-TTTCTTAA 384
consensus_11988#3      ACACATTTTTT-CATTTTCTGTAAATGCCGATAAATTTGTGT--TGATAAA-TTTCTTAA 401
consensus_11988#4      ACACATTTTTT-CATTTTCTGTAAATGCCGATAAATTTGTGT--TGATAAA-TTTCTTAA 374
                       *********** ******************** *** *****  * ****  ***   **

consensus_11988#0      TTTTTCTATCGATTAACGTAATTAAAATAAAATATTATTGAATACATAANANAAAAAAAA 421
consensus_11988#5      TTTTTCTATCGATTAACGTAATTAAAATAAAATACTATTGAATACNTNGNNNGNAACTAC 431
consensus_11988#2      TTTTTCTATCGATTAACATAATTTAAATAACATATCATTGAA------ATACCTACAAAA 468
consensus_11988#1      TTTTTCTAATAACTCACTGAATTTAAATAAAATACTATTGAATACNTNNNNNNNNNNNNN 444
consensus_11988#3      TTTTTCTAATAACTCACTGAATTTAAATAAAATACTATTGAATACATAAACAAAAAAAAA 461
consensus_11988#4      TTTTTCTAATAACTCACTGAATTTACATAAAATACTATTGAATACATACGCCAAAGAGAA 434
                       ********   * * **  **** * **** ***  ******                  

consensus_11988#0      AAAAAAAAAAAAAAAAAAAAAAAAACCAAACAAAAAAAAAAAAAACAAAAAAAAAACNNA 481
consensus_11988#5      NGGGGAAAA--------------------------------------------------- 440
consensus_11988#2      AAACACAAAAAAACCCAAAAAAAACCCCGGGGGGCGCTTGTCCCTTTTAAGCTACTCATC 528
consensus_11988#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 504
consensus_11988#3      AAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 521
consensus_11988#4      GCGCCTCGACAGCGCCTCCCTGTCTTATAAGTGAAAAGAGAGAAAATTCGAA-------- 486
                                                                                   

consensus_11988#0      CCCCTCCCAAAAAAAAAAAAAAAAAAACACCCAAAACACCCCTNCCCCACCNNACNNCCT 541
consensus_11988#5      ------------------------------------------------------------
consensus_11988#2      CCCCTCCATATAGCTGCGTGCGCCGCACGAAGAAACAAAAGTTTCTTCACTAAAAAAAAC 588
consensus_11988#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 564
consensus_11988#3      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------- 571
consensus_11988#4      ------------------------------------------------------------
                                                                                   

consensus_11988#0      CCCCCCCCCCCCCCCCCTTTTTTTCCCCCCTTCTCCCCCTCCTCCCTTTCCCTCTTAATA 601
consensus_11988#5      ------------------------------------------------------------
consensus_11988#2      CACAAGGGG--------------------------------------------------- 597
consensus_11988#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------- 599
consensus_11988#3      ------------------------------------------------------------
consensus_11988#4      ------------------------------------------------------------
                                                                                   

consensus_11988#0      TATTACCCCACTTCCTCCCTTTTCCA 627
consensus_11988#5      --------------------------
consensus_11988#2      --------------------------
consensus_11988#1      --------------------------
consensus_11988#3      --------------------------
consensus_11988#4      --------------------------