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Oryza sativa
cluster # 11994 cluster # 11994       Sequences # 9       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11994#0 length = 1560 sequences # 6  
 consensus_11994#1 length = 843 sequences # 2  
consensus_11994#2 length = 573 sequences # 1  
consensusID : consensus_11994#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1560
fasta sequence 
                              [CAAAAGCCCTAAACCGCCCACCTCCTCTCGCCCCTTCTCGCCGCCTCCGCCGCCGCCGCCGCCGACGAGGAGGAGGCCGATGGGCTCCGAGGAGGAGCCGTCGCAGATGCGGAGGGCGCTGGTGGACGCGCTCGCGGGGGCCATCTCCGGCGGCATCTCCCGCACCGTCACCTCCCCCCTCGACGTCATCAAAATCCGCTTCCAGGTTCAATTGGAGCCCACAACCTCGTGGGGTGTACTTCGAAGGGATGTCTATGGACCTTCCAAGTACACTGGGCTTTTGCAAGCAAGTAAAGATATTCTCCGAGAGGAAGGTTTGCCGGGATTTTGGAGAGGAAATGTTCCAGCCCTATTAATGTATATGCCATATACAGCTATACAATTCACTGTTCTACACAAGCTGAAAACATTTGCTTCTGGTTCATCCAAAACAGAGGATCATTTGCACTTGAGTCCTTACCTATCGTATGTAAGTGGGGCTATAGCAGGATGTGCAGCAACAGTAGGATCATATCCATTTGACCTTCTCAGAACAATTCTTGCATCACAGGGTGAACCGAAGGTTTACCCTGACATGAGGTCTGCATTTCTTGATATAATGAAAACCCGCGGTTTCCGAGGACTTTACGCCGGTCTAACTCCAACTCTTGTTGAAATCATACCATATGCTGGCTTACAGTTTGGTTCATATGATACTTTCAAACGGTCGATGATGACATGGAATAGGTACCGATATTCACATCTTAACTCAGGAAGTGAGGATGATTCAGTATCAAGCTTCCAGTTATTTCTTTGTGGATTTGCAGCCGGAACATTTTCAAAAGCTGCTTGTCACCCACTTGATGTTGTAAAGAAAAGATTTCAGATTGAAGGATTAAAACGACATCCAAGATATGGCGCCCGAATTGAGAGCAGCACATACAAGGGCATGTACCATGCCCTAAAAGAGATTGTTGCGAAGGAGGGGTTTGGAGGCCTTTATAAAGGACTTTTCCCATCTTTGGTGAAATCGGCTCCTGCTGGTGCCGTGACATTTGTGGCATATGAATACATCTCAGACTGGATAGGGAGCAAAGCTGGAGTCGAGTGAGTTCTTGGATGAAGGAGCCATTGAGAGATACAACATACAATGATGAGAGAACAGTGTCCACTCTTAATTGTTTTGTGACCGCAAGGTCGAAAGTTAAAAAGTGCATACAATCCCTTGAGAGCTGATACTTGGAAAGCCTTGCATAGAATTAGCTACTCTTGTCATTTCTCTGCCTTTTTGCCCCATTGACCTGTGTTGTTGCATTCGTTGAGATGTAACAGTGAGGATGAGTAAAACTAAGGAAAGTGTAGAGCTTGTGACGCTTGATGAAGGCCGGGGAGCGGCAGGCATTTTTGTTAAGATGATATTATCTCACTCCTATATGTCCCTCACTCACATAATGCAGTTAATGTGAACTGTTACATGATTCGTAGCTTATCTGCCTTTATGGCTCATGCAAACTGTAACTCTGGGAGACTGGGACTGAAAGTCGTTATTTGCTTCGTGATGAGTAGCAAAAAAAAAAAAAA]

[+] EMBL CB649684             [CAAAAGCCCTAAACCGCCCACCTCCTCTCGCCCCTTCTCGCCGCCTCCGCCGCCGCCGCCGCCGACGAGGAGGAGGCCGATGGGCTCCGAGGAGGAGCCGTCGCAGATGCGGAGGGCGCTGGTGGACGCGCTCGCGGGGGCCATCTCCGGCGGCATCTCCCGCACCGTCACCTCCCCCCTCGACGTCATCAAAATCCGCTTCCAGGTTCAATTGGAGCCCACAACCTCGTGGGGTGTACTTCGAAGGGATGTCTATGGACCTTCCAAGTACACTGGGCTTTTGCAAGCAAGTAAAGATATTCTCCGAGAGGAAGGTTTGCCGGGATTTTGGAGAGGAAATGTTCCAGCCCTATTAATGTATATGCCATATACAGCTATACAATTCACTGTTCTACACAAGCTGAAAACATTTGCTTCTGGTTCATCCAAAACAGAGGATCATTTGCACTTGAGTCCTTACCTATCGTATGTAAGTGGGGCTATAGCAGGATGTGCAGCAACAGTAGGATCATATCCATTTGACCTTCTCAGAACAATTCTTGCATCACAGGGTGAACCGAAGGTTTACCCTGACATGAGGTCTGCATTTCTTGATATAATGAGAACCCGCGGTTTCCGAGGACTTTACGCCGGTCTAACTCCAACTCTTGTTGAAATCATACCATATGCTGGCTTACAGTTTGGTTCATATGATACTTTCAAACGGTCGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK101396             [           AACCGCCCACCTCCTCTCGCCCCTTCTCGCCGCCTCCGCCGCCGCCGCCGCCGACGAGGAGGAGGCCGATGGGCTCCGAGGAGGAGCCGTCGCAGATGCGGAGGGCGCTGGTGGACGCGCTCGCGGGGGCCATCTCCGGCGGCATCTCCCGCACCGTCACCTCCCCCCTCGACGTCATCAAAATCCGCTTCCAGGTTCAATTGGAGCCCACAACCTCGTGGGGTGTACTTCGAAGGGATGTCTATGGACCTTCCAAGTACTCTGGGCTTTTGCAAGCAAGTAAAGATATTCTCCGAGAGGAAGGTTTGCCGGGATTTTGGAGAGGAAATGTTCCAGCCCTATTAATGTATATGCCATATACAGCTATACAATTCACTGTTCTACACAAGCTGAAAACATTTGCTTCTGGTTCATCCAAAACAGAGGATCATTTGCACTTGAGTCCTTACCTATCGTATGTAAGTGGGGCTATAGCAGGATGTGCAGCAACAGTAGGATCATATCCATTTGACCTTCTCAGAACAATTCTTGCATCACAGGGTGAACCGAAGGTTTACCCTGACATGAGGTCTGCATTTCTTGATATAATGAAAACCCGCGGTTTCCGAGGACTTTACGCCGGTCTAACTCCAACTCTTGTTGAAATCATACCATATGCTGGCTTACAGTTTGGTTCATATGATACTTTCAAACGGTCGATGATGACATGGAATAGGTACCGATATTCACATCTTAACTCAGGAAGTGAGGATGATTCAGTATCAAGCTTCCAGTTATTTCTTTGTGGATTTGCAGCCGGAACATTTTCAAAAGCTGCTTGTCACCCACTTGATGTTGTAAAGAAAAGATTTCAGATTGAAGGATTAAAACGACATCCAAGATATGGCGCCCGAATTGAGAGCAGCACATACAAGGGCATGTACCATGCCCTAAAAGAGATTGTTGCGAAGGAGGGGTTTGGAGGCCTTTATAAAGGACTTTTCCCATCTTTGGTGAAATCGGCTCCTGCTGGTGCCGTGACATTTGTGGCATATGAATACATCTCAGACTGGATAGGGAGCAAAGCTGGAGTCGAGTGAGTTCTTGGATGAAGGAGCCATTGAGAGATACAACATACAATGATGAGAGAACAGTGTCCACTCTTAATTGTTTTGTGACCGCAAGGTCGAAAGTTAAAAAGTGCATACAATCCCTTGAGAGCTGATACTTGGAAAGCCTTGCATAGAATTAGCTACTCTTGTCATTTCTCTGCCTTTTTGCCCCATTGACCTGTGTTGTTGCATTCGTTGAGATGTAACAGTGAGGATGAGTAAAACTAAGGAAAGTGTAGAGCTTGTGACGCTTGATGAAGGCCGGGGAGCGGCAGGCATTTTTGTTAAGATGATATTATCTCACTCCTATATGTCCCTCACTCACATAATGCAGTTAATGTGAACTGTTACATG                                                                                                        ]
[+] EMBL AK069988             [                       CCTCTCGCCCCTTCTCGCCGCCTCCGCCGCCGCCGCCGCCGACGAGGAGGAGGCCGATGGGCTCCGAGGAGGAGCCGTCGCAGATGCGGAGGGCGCTGGTGGACGCGCTCGCGGGGGCCATCTCCGGCGGCATCTCCCGCACCGTCACCTCCCCCCTCGACGTCATCAAAATCCGCTTCCAGGTTCAATTGGAGCCCACAACCTCGTGGGGTGTACTTCGAAGGGATGTCTATGGACCTTCCAAGTACACTGGGCTTTTGCAAGCAAGTAAAGATATTCTCCGAGAGGAAGGTTTGCCGGGATTTTGGAGAGGAAATGTTCCAGCCCTATTAATGTATATGCCATATACAGCTATACAATTCACTGTTCTACACAAGCTGAAAACATTTGCTTCTGGTTCATCCAAAACAGAGGATCATTTGCACTTGAGTCCTTACCTATCGTATGTAAGTGGGGCTATAGCAGGATGTGCAGCAACAGTAGGATCATATCCATTTGACCTTCTCAGAACAATTCTTGCATCACAGGGTGAACCGAAGGTTTACCCTGACATGAGGTCTGCATTTCTTGATATAATGAAAACCCGCGGTTTCCGAGGACTTTACGCCGGTCTAACTCCAACTCTTGTTGAAATCATACCATATGCTGGCTTACAGTTTGGTTCATATGATACTTTCAAACGGTCGATGATGACATGGAATAGGTACCGATATTCACATCTTAACTCAGGAAGTGAGGATGATTCAGTATCAAGCTTCCAGTTATTTCTTTGTGGATTTGCAGCCGGAACATTTTCAAAAGCTGCTTGTCACCCACTTGATGTTGTAAAGAAAAGATTTCAGATTGAAGGATTAAAACGACATCCAAGATATGGCGCCCGAATTGAGAGCAGCACATACAAGGGCATGTACCATGCCCTAAAAGAGATTGTTGCGAAGGAGGGGTTTGGAGGCCTTTATAAAGGACTTTTCCCATCTTTGGTGAAATCGGCTCCTGCTGGTGCCGTGACATTTGTGGCATATGAATACATCTCAGACTGGATAGGGAGCAAAGCTGGAGTCGAGTGAGTTCTTGGATGAAGGAGCCATTGAGAGATACAACATACAATGATGAGAGAACAGTGTCCACTCTTAATTGTTTTGTGACCGCAAGGTCGAAAGTTAAAAAGTGCATACAATCCCTTGAGAGCTGATACTTGGAAAGCCTTGCATAGAATTAGCTACTCTTGTCATTTCTCTGCCTTTTTGCCCCATTGACCTGTGTTGTTGCATTCGTTGAGATGTAACAGTGAGGATGAGTAAAACTAAGGAAAGTGTAGAGCTTGTGACGCTTGATGAAGGCCGGGGAGCGGCAGGCATTTTTGTTAAGATGATATTATCTCACTCCTATATGTCCCTCACTCACATAATGCAGTTAAT                                                                                                                       ]
[+] EMBL CB669024             [                                                           ttaCGACGAGGAGGAGGCCGATGGGCTCCGAGGAGGAGCCGTCGCAGATGCGGAGGGCGCTGGTGGACGCGCTCGCGGGGGCCATCTCCGGCGGCATCTCCCGCACCGTCACCTCCCCCCTCGACGTCATCAAAATCCGCTTCCAGGTTCAATTGGAGCCCACAACCTCGTGGGGTGTACTTCGAAGGGATGTCTATGGACCTTCCAAGTACACTGGGCTTTTGCAAGCAAGTAAAGATATTCTCCGAGAGGAAGGTTTGCCGGGATTTTGGAGAGGAAATGTTCCAGCCCTATTAATGTATATGCCATATACAGCTATACAATTCACTGTTCTACACAAGCTGAAAACATTTGCTTCTGGTTCATCCAAAACAGAGGATCATTTGCACTTGAGTCCTTACCTATCGTATGTAAGTGGGGCTATAGCAGGATGTGCAGCAACAGTAGGATCATATCCATTTGACCTTCTCAGAACAATTCTTGCATCACAGGGTGAACCGAAGGTTTACCCTGACATGAGGTCTGCATTTCTTGATATAATGAAAACCCGCGGTTTCCGAGGACTTTACGCCGGTCTAACTCCAACTCTTGTTGAAATCATACCATATGCTGGCTTACAGTTTGGTTCATATGATACTTTCAAACGGTCGATGATGACATGGAATAGGTACCGATATTCACATCTTAACTCAGGAAGTGAGGATGATTCAGTATCAAGCTTCCAGTTATTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AT003663             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCTGATACTTGGAAAGCCTTGCATAGAATTAGCTACTCTTGTCATTTCTCTGCCTTTTTGCCCCATTGACCTGTGTTGTTGCATTCGTTGAGATGTAACAGTGAGGATGAGTAAAACTAAGGAAAGTGTAGAGCTTGTGACGCTTGATGAAGGCCGGGGAGCGGCAGGCATTTTTGTTAAGATGATATTATCTCACTCCTATATGTCCCTCACTCACATAATGCAGTTAATGTGAACTGTTACATGATTCGTAGCTTATCTGCCTTTATGGCTCATGCAAACTGTAACTCTGGGAGACTGGGACTGAAAGTCGTTATTTGCTTCGTGATGAGTAGCAAAAAAAAAAAAAA]
[+] EMBL AU070460             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACTCTTGTCATTTCTCTGCCTTTTTGCCCCATTGACCTGTGTTGTTGCATTCGTTGAGATGTAACAGTGAGGATGAGTAAAACTAAGGAAAGTGTAGAGCTTGTGACGCTTGATGAAGGCCGGGGAGCGGCAGGCATTTTTGTTAAGATGATATTATCTCACTCCTATATGTCCCTCACTCACATAATGCAGTTAATGTGAACTGTTACATGATTCGTAGCTTATCTGCCTTTATGGCTCATGCAAACTGTAACTCTGGGAGACTGGGACTGAAAGTCGTTATTTGCTTCGTGAaaa                   ]




>consensus_11994#0
CAAAAGCCCTAAACCGCCCACCTCCTCTCGCCCCTTCTCGCCGCCTCCGCCGCCGCCGCC
GCCGACGAGGAGGAGGCCGATGGGCTCCGAGGAGGAGCCGTCGCAGATGCGGAGGGCGCT
GGTGGACGCGCTCGCGGGGGCCATCTCCGGCGGCATCTCCCGCACCGTCACCTCCCCCCT
CGACGTCATCAAAATCCGCTTCCAGGTTCAATTGGAGCCCACAACCTCGTGGGGTGTACT
TCGAAGGGATGTCTATGGACCTTCCAAGTACACTGGGCTTTTGCAAGCAAGTAAAGATAT
TCTCCGAGAGGAAGGTTTGCCGGGATTTTGGAGAGGAAATGTTCCAGCCCTATTAATGTA
TATGCCATATACAGCTATACAATTCACTGTTCTACACAAGCTGAAAACATTTGCTTCTGG
TTCATCCAAAACAGAGGATCATTTGCACTTGAGTCCTTACCTATCGTATGTAAGTGGGGC
TATAGCAGGATGTGCAGCAACAGTAGGATCATATCCATTTGACCTTCTCAGAACAATTCT
TGCATCACAGGGTGAACCGAAGGTTTACCCTGACATGAGGTCTGCATTTCTTGATATAAT
GAAAACCCGCGGTTTCCGAGGACTTTACGCCGGTCTAACTCCAACTCTTGTTGAAATCAT
ACCATATGCTGGCTTACAGTTTGGTTCATATGATACTTTCAAACGGTCGATGATGACATG
GAATAGGTACCGATATTCACATCTTAACTCAGGAAGTGAGGATGATTCAGTATCAAGCTT
CCAGTTATTTCTTTGTGGATTTGCAGCCGGAACATTTTCAAAAGCTGCTTGTCACCCACT
TGATGTTGTAAAGAAAAGATTTCAGATTGAAGGATTAAAACGACATCCAAGATATGGCGC
CCGAATTGAGAGCAGCACATACAAGGGCATGTACCATGCCCTAAAAGAGATTGTTGCGAA
GGAGGGGTTTGGAGGCCTTTATAAAGGACTTTTCCCATCTTTGGTGAAATCGGCTCCTGC
TGGTGCCGTGACATTTGTGGCATATGAATACATCTCAGACTGGATAGGGAGCAAAGCTGG
AGTCGAGTGAGTTCTTGGATGAAGGAGCCATTGAGAGATACAACATACAATGATGAGAGA
ACAGTGTCCACTCTTAATTGTTTTGTGACCGCAAGGTCGAAAGTTAAAAAGTGCATACAA
TCCCTTGAGAGCTGATACTTGGAAAGCCTTGCATAGAATTAGCTACTCTTGTCATTTCTC
TGCCTTTTTGCCCCATTGACCTGTGTTGTTGCATTCGTTGAGATGTAACAGTGAGGATGA
GTAAAACTAAGGAAAGTGTAGAGCTTGTGACGCTTGATGAAGGCCGGGGAGCGGCAGGCA
TTTTTGTTAAGATGATATTATCTCACTCCTATATGTCCCTCACTCACATAATGCAGTTAA
TGTGAACTGTTACATGATTCGTAGCTTATCTGCCTTTATGGCTCATGCAAACTGTAACTC
TGGGAGACTGGGACTGAAAGTCGTTATTTGCTTCGTGATGAGTAGCAAAAAAAAAAAAAA

consensusID : consensus_11994#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 843
fasta sequence 
                              [AACATTTTCAAAAGCTGCTTGTCACCCACTTGATGTTGTAAAGAAAAGATTTCAGATTGAAGGATTAAAACGACATCCAAGATATGGCGCCCGAATTGAGAGCAGCACATACAAGGGCATGTACCATGCCCTAAAAGAGATTGTTGCGAAGGAGGGGTTTGGAGGCCTTTATAAAGGACTTTTCCCATCTTTGGTGAAATCGGCTCCTGCTGGTGCCGTGACATTTGTGGCATATGAATACATCTCAGACTGGTTAGAGTCAATACTGATGTGACAAATCGCCATGCAGTGTTATTCATTTTCCTCCCCGTTTTGTGTTGTATTGTCCTTATTATTTCGCCCTGCTGTTGCACACTTGAATTAGTTTAATTGATCCATTTCTGGAAGAGGCTGCAGTTCCTTTAGATCTTGCAGTCTATACAAGATTTGAGGAGCCTACAAAACCAGCTGGATGAGTAATGCTTGATAGGGAGCAAAGCTGGAGTCGAGTGAGTTCTTGGATGAAGGAGCCATTGAGAGATACAACATACAATGATGAGAGAACAGTGTCCACTCTTAATTGTTTTGTGACCGCAAGGTCGAAAGTTAAAAAGTGCATACAATCCCTTGAGAGCTGATACTTGGAAAGCCTTGCATAGAATTAGCTACTCTTGTCATTTCTCTGCCTTTTTGCCCCATTGACCTGTGTTGTTGCATTCGTTGAGATGTAACAGTGAGGATGAGTAAAACTAAGGAAAGTGTAGAGCTTGTGACGCTTGATGAAGGCCGGGGAGCGGCAGGCGTTTTTGTTAAGATGATATTATCTCACTCCTATATGTCCCTCACACGCATAATGCAGTTAAT]

[-] EMBL CB649685             [AACATTTTCAAAAGCTGCTTGTCACCCACTTGATGTTGTAAAGAAAAGATTTCAGATTGAAGGATTAAAACGACATCCAAGATATGGCGCCCGAATTGAGAGCAGCACATACAAGGGCATGTACCATGCCCTAAAAGAGATTGTTGCGAAGGAGGGGTTTGGAGGCCTTTATAAAGGACTTTTCCCATCTTTGGTGAAATCGGCTCCTGCTGGTGCCGTGACATTTGTGGCATATGAATACATCTCAGACTGGTTAGAGTCAATACTGATGTGACAAATCGCCATGCAGTGTTATTCATTTTCCTCCCCGTTTTGTGTTGTATTGTCCTTATTATTTCGCCCTGCTGTTGCACACTTGAATTAGTTTAATTGATCCATTTCTGGAAGAGGCTGCAGTTCCTTTAGATCTTGCAGTCTATACAAGATTTGAGGAGCCTACAAAACCAGCTGGATGAGTAATGCTTGATAGGGAGCAAAGCTGGAGTCGAGTGAGTTCTTGGATGAAGGAGCCATTGAGAGATACAACATACAATGATGAGAGAACAGTGTCCACTCTTAATTGTTTTGTGACCGCAAGGTCGAAAGTTAAAAAGTGCATACAATCCCTTGAGAGCTGATACTTGGAAAGCCTTGCATAGAATTAGCTACTCTTGTCATTTCTCTGCCTTTTTGCCCCATTGACCTGTGTTGTTGCATTCGTTGAGATGTAACAGTGAGGATGAGTAAAACTAAGGAAAGTGTAGAGCTTGTGACGCTTGATGAAGGCCGGGGAGCGGCAGGCGTTTTTGTTAAGATGATATTAT                                        ]
[-] EMBL CB669025             [                                                 TTTCAGATTGAAGGATTAAAACGACATCCAAGATATGGCGCCCGAATTGAGAGCAGCACATACAAGGGCATGTACCATGCCCTAAAAGAGATTGTTGCGAAGGAGGGGTTTGGAGGCCTTTATAAAGGACTTTTCCCATCTTTGGTGAAATCGGCTCCTGCTGGTGCCGTGACATTTGTGGCATATGAATACATCTCAGACTGGTTAGAGTCAATACTGATGTGACAAATCGCCATGCAGTGTTATTCATTTTCCTCCCCGTTTTGTGTTGTATTGTCCTTATTATTTCGCCCTGCTGTTGCACACTTGAATTAGTTTAATTGATCCATTTCTGGAAGAGGCTGCAGTTCCTTTAGATCTTGCAGTCTATACAAGATTTGAGGAGCCTACAAAACCAGCTGGATGAGTAATGCTTGATAGGGAGCAAAGCTGGAGTCGAGTGAGTTCTTGGATGAAGGAGCCATTGAGAGATACAACATACAATGATGAGAGAACAGTGTCCACTCTTAATTGTTTTGTGACCGCAAGGTCGAAAGTTAAAAAGTGCATACAATCCCTTGAGAGCTGATACTTGGAAAGCCTTGCATAGAATTAGCTACTCTTGTCATTTCTCTGCCTTTTTGCCCCATTGACCTGTGTTGTTGCATTCGTTGAGATGTAACAGTGAGGATGAGTAAAACTAAGGAAAGTGTAGAGCTTGTGACGCTTGATGAAGGCCGGGGAGCGGCAGGCATTTTTGTTAAGATGATATTATCTCACTCCTATATGTCCCTCACACGCATAATGCAGTTAAT]




>consensus_11994#1
AACATTTTCAAAAGCTGCTTGTCACCCACTTGATGTTGTAAAGAAAAGATTTCAGATTGA
AGGATTAAAACGACATCCAAGATATGGCGCCCGAATTGAGAGCAGCACATACAAGGGCAT
GTACCATGCCCTAAAAGAGATTGTTGCGAAGGAGGGGTTTGGAGGCCTTTATAAAGGACT
TTTCCCATCTTTGGTGAAATCGGCTCCTGCTGGTGCCGTGACATTTGTGGCATATGAATA
CATCTCAGACTGGTTAGAGTCAATACTGATGTGACAAATCGCCATGCAGTGTTATTCATT
TTCCTCCCCGTTTTGTGTTGTATTGTCCTTATTATTTCGCCCTGCTGTTGCACACTTGAA
TTAGTTTAATTGATCCATTTCTGGAAGAGGCTGCAGTTCCTTTAGATCTTGCAGTCTATA
CAAGATTTGAGGAGCCTACAAAACCAGCTGGATGAGTAATGCTTGATAGGGAGCAAAGCT
GGAGTCGAGTGAGTTCTTGGATGAAGGAGCCATTGAGAGATACAACATACAATGATGAGA
GAACAGTGTCCACTCTTAATTGTTTTGTGACCGCAAGGTCGAAAGTTAAAAAGTGCATAC
AATCCCTTGAGAGCTGATACTTGGAAAGCCTTGCATAGAATTAGCTACTCTTGTCATTTC
TCTGCCTTTTTGCCCCATTGACCTGTGTTGTTGCATTCGTTGAGATGTAACAGTGAGGAT
GAGTAAAACTAAGGAAAGTGTAGAGCTTGTGACGCTTGATGAAGGCCGGGGAGCGGCAGG
CGTTTTTGTTAAGATGATATTATCTCACTCCTATATGTCCCTCACACGCATAATGCAGTT
AAT

consensusID : consensus_11994#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence 
                              [GTCACCTCCCCCCTCGACGTCATCAAAATCCGCTTCCAGGTTCAATTGGAGCCCACAACCTCGTGGGGTGTACTTCGAAGGGATGTCTATGGACCTTCCAAGTACACTGGGCTTTTGCAAGCAAGTAAAGATATTCTCCGAGAGGAAGGTTTGCCGGGATTTTGGAGAGGAAATGTTCCAGCCCTATTAATGTATATGCCATATACAGCTATACAATTCACTGTTCTACACAAGCTGAAAACATTTGCTTCTGGTTCATCCAAAACAGAGGATCATTTGCACTTGAGTCCTTACCTATCGTATGTAAGTGGGGCTATAGCAGGATGTGCAGCAACAGTAGGATCATATCCATTTGACCTTCTCAGAACAATTCTTGCATCACAGGGTGAACCGAAGGTTTACCCTGACATGAGGTCTGCATTTCTTGATATAATGAAAACCCGCGGTTTCCGNNNACTTTACGCCGGTCTAACTCCAACTCTTGTTGAAATCATACCATATGCTGGCTTACNGNTTGGTTCATATGATACTTTCAAACGGTCGATGATGACANNNNNNNNNNNCCGATANTNN]

[+] EMBL CF197016             [GTCACCTCCCCCCTCGACGTCATCAAAATCCGCTTCCAGGTTCAATTGGAGCCCACAACCTCGTGGGGTGTACTTCGAAGGGATGTCTATGGACCTTCCAAGTACACTGGGCTTTTGCAAGCAAGTAAAGATATTCTCCGAGAGGAAGGTTTGCCGGGATTTTGGAGAGGAAATGTTCCAGCCCTATTAATGTATATGCCATATACAGCTATACAATTCACTGTTCTACACAAGCTGAAAACATTTGCTTCTGGTTCATCCAAAACAGAGGATCATTTGCACTTGAGTCCTTACCTATCGTATGTAAGTGGGGCTATAGCAGGATGTGCAGCAACAGTAGGATCATATCCATTTGACCTTCTCAGAACAATTCTTGCATCACAGGGTGAACCGAAGGTTTACCCTGACATGAGGTCTGCATTTCTTGATATAATGAAAACCCGCGGTTTCCGNNNACTTTACGCCGGTCTAACTCCAACTCTTGTTGAAATCATACCATATGCTGGCTTACNGNTTGGTTCATATGATACTTTCAAACGGTCGATGATGACANNNNNNNNNNNCCGATANTNN]




>consensus_11994#2
GTCACCTCCCCCCTCGACGTCATCAAAATCCGCTTCCAGGTTCAATTGGAGCCCACAACC
TCGTGGGGTGTACTTCGAAGGGATGTCTATGGACCTTCCAAGTACACTGGGCTTTTGCAA
GCAAGTAAAGATATTCTCCGAGAGGAAGGTTTGCCGGGATTTTGGAGAGGAAATGTTCCA
GCCCTATTAATGTATATGCCATATACAGCTATACAATTCACTGTTCTACACAAGCTGAAA
ACATTTGCTTCTGGTTCATCCAAAACAGAGGATCATTTGCACTTGAGTCCTTACCTATCG
TATGTAAGTGGGGCTATAGCAGGATGTGCAGCAACAGTAGGATCATATCCATTTGACCTT
CTCAGAACAATTCTTGCATCACAGGGTGAACCGAAGGTTTACCCTGACATGAGGTCTGCA
TTTCTTGATATAATGAAAACCCGCGGTTTCCGNNNACTTTACGCCGGTCTAACTCCAACT
CTTGTTGAAATCATACCATATGCTGGCTTACNGNTTGGTTCATATGATACTTTCAAACGG
TCGATGATGACANNNNNNNNNNNCCGATANTNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11994#0      CAAAAGCCCTAAACCGCCCACCTCCTCTCGCCCCTTCTCGCCGCCTCCGCCGCCGCCGCC 60
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      ------------------------------------------------------------
                                                                                   

consensus_11994#0      GCCGACGAGGAGGAGGCCGATGGGCTCCGAGGAGGAGCCGTCGCAGATGCGGAGGGCGCT 120
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      ------------------------------------------------------------
                                                                                   

consensus_11994#0      GGTGGACGCGCTCGCGGGGGCCATCTCCGGCGGCATCTCCCGCACCGTCACCTCCCCCCT 180
consensus_11994#2      ----------------------------------------------GTCACCTCCCCCCT 14
consensus_11994#1      ------------------------------AACATTTTCAAAAGCTGCTTGTCACCCACT 30
                                                                     *       *** **

consensus_11994#0      CGACGTCATCAAAATCCGCTTCCAGGTTCAATTGGAGCCCACAACCTCGTGGGGTGTACT 240
consensus_11994#2      CGACGTCATCAAAATCCGCTTCCAGGTTCAATTGGAGCCCACAACCTCGTGGGGTGTACT 74
consensus_11994#1      TGATGTTGTAAAGAAAAGATTTCAGATTGAA----GGATTAAAACGACATCCAAGATATG 86
                        ** **  * ** *   * ** *** ** **     *   * ***  * *      **  

consensus_11994#0      TCGAAGGGATGTCTATGGACCTTCCAAGTACACTGGGCTTTTGCAAGCAAGTAAAGATAT 300
consensus_11994#2      TCGAAGGGATGTCTATGGACCTTCCAAGTACACTGGGCTTTTGCAAGCAAGTAAAGATAT 134
consensus_11994#1      GCGCCCGAAT-----TGAGAGCAGCACATACAAGGGCATGTACCATGCCCTAAAAGAGAT 141
                        **   * **     **       **  ****  **  * *  ** **    ***** **

consensus_11994#0      TCTCCGAGAGGAAGGTTTGCCGGGATTTTGGAGAGGAAATGTTCCAGCCCTATTAATGTA 360
consensus_11994#2      TCTCCGAGAGGAAGGTTTGCCGGGATTTTGGAGAGGAAATGTTCCAGCCCTATTAATGTA 194
consensus_11994#1      TGTTGCGAAGGAGGGGTTTGGAGGCCTTTATAAAGGACTTTTCCCATCTTTGGTGAAATC 201
                       * *     **** ** **    **  ***  * ****  * * *** *  *  * *  * 

consensus_11994#0      TATGCCATATACAGCTATACAATTCACTGTTC-----TACA---CAAGCTGAAAACATTT 412
consensus_11994#2      TATGCCATATACAGCTATACAATTCACTGTTC-----TACA---CAAGCTGAAAACATTT 246
consensus_11994#1      GGCTCCTGCTGGTGCCGTGACATTTGTGGCATATGAATACATCTCAGACTGGTTAGAGTC 261
                           **   *   **  *   ***    *        ****   **  ***   * * * 

consensus_11994#0      GCTTCTGGTTCATCCAAAACAGAGGATCATTTGCACTTGAGTCCTTACCTATCGTATGTA 472
consensus_11994#2      GCTTCTGGTTCATCCAAAACAGAGGATCATTTGCACTTGAGTCCTTACCTATCGTATGTA 306
consensus_11994#1      AATACTGATGTGAC--AAATCGCCATGCAGTGTTATTCATTTTCCTCCCCGTTTTGTGTT 319
                         * *** *    *  ***  *     ** *   * *    * * * **  *  * *** 

consensus_11994#0      AGTGGGGCTATAGCAGGATGTGCAGCA-----ACAGTAGGATCATATCCATTTGACCTTC 527
consensus_11994#2      AGTGGGGCTATAGCAGGATGTGCAGCA-----ACAGTAGGATCATATCCATTTGACCTTC 361
consensus_11994#1      GTATTGTCCTTATTATTTCGCCCTGCTGTTGCACACTTGAATTAGTTTAATTGATCCATT 379
                            * *  **  *    *  * **      *** * * ** *  *  ***   ** * 

consensus_11994#0      TCAGAACAATTCTTGCATCACAGGGTGAACCGAAGGTTTACCCT-GACATGAGG--TCTG 584
consensus_11994#2      TCAGAACAATTCTTGCATCACAGGGTGAACCGAAGGTTTACCCT-GACATGAGG--TCTG 418
consensus_11994#1      TCTGGAAGAGGCT-GCAGTTCCTTTAGATCTTGCAGTCTATACAAGATTTGAGGAGCCTA 438
                       ** * *  *  ** ***   *     ** *     ** **  *  **  *****   ** 

consensus_11994#0      CATTTCTTGATATAATGAAAACCCGCGGTTTCCGAGGACTTTACGCCGGTCTAACTCCAA 644
consensus_11994#2      CATTTCTTGATATAATGAAAACCCGCGGTTTCCGNNNACTTTACGCCGGTCTAACTCCAA 478
consensus_11994#1      CAAAACCAGCTGGATGAGTAATGCTTGATAGGGAGCAAAGCTGGAGTCGAGTGAGTTCTT 498
                       **   *  * *  *     **  *  * *        *   *      *  * * * *  

consensus_11994#0      CTCTTGTTGAAATCATACCATATGCTGGCT-TACAGTTTGGTTCATATGAT--ACTTTCA 701
consensus_11994#2      CTCTTGTTGAAATCATACCATATGCTGGCT-TACNGNTTGGTTCATATGAT--ACTTTCA 535
consensus_11994#1      GGATGAAGGAGCCATTGAGAGATACAACATACAATGATGAGAGAACAGTGTCCACTCTTA 558
                          *    **     *   * ** *    *  *  * *  *   * *   *  *** * *

consensus_11994#0      AACGGTCGATGATGACATGGAATAGGTACCGATATTCACATCTTAACTCAGGAAGTGAGG 761
consensus_11994#2      AACGGTCGATGATGACANNNNNNNNNNNCCGATANTNN---------------------- 573
consensus_11994#1      ATTGTTTTGTGACCGCAAGGTCGAAAGTTAAAAAGTGCATACAATCCCTTGAGAGCTGAT 618
                       *  * *   ***   **              * * *                        

consensus_11994#0      ATGATTCAGTATCAAGCTTCCAGTTATTTCTTTGTGGATTTGCAGCCGGAACATTTTCAA 821
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      ACTTGGAAAGCCTTGCATAGAATTAGCTACTCTTGTCATTTCTCTGCCTTTTTGCCCCAT 678
                                                                                   

consensus_11994#0      AAGCTGCTTGTCACCCACTTGATGTTGTAAAGAAAAGATTTCAGATTGAAGGATTAAAAC 881
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      TGACCTGTGTTGTTGCATTCGTTGAGATGTAACAGTGAGGATGAGTAAAACTAAGGAAAG 738
                                                                                   

consensus_11994#0      GACATCCAAGATATGGCGCCCGAATTGAGAGCAGCACATACAAGGGCATGTACCATGCCC 941
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      TGTAGAGCTTGTGACGCTTGATGAAGGCCGGGGAGCGGCAGGCGTTTTTGTTAAGATGAT 798
                                                                                   

consensus_11994#0      TAAAAGAGATTGTTGCGAAGGAGGGGTTTGGAGGCCTTTATAAAGGACTTTTCCCATCTT 1001
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      ATTATCTCACTCCTATATGTCCCTCACACGCATAATGCAGTTAAT--------------- 843
                                                                                   

consensus_11994#0      TGGTGAAATCGGCTCCTGCTGGTGCCGTGACATTTGTGGCATATGAATACATCTCAGACT 1061
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      ------------------------------------------------------------
                                                                                   

consensus_11994#0      GGATAGGGAGCAAAGCTGGAGTCGAGTGAGTTCTTGGATGAAGGAGCCATTGAGAGATAC 1121
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      ------------------------------------------------------------
                                                                                   

consensus_11994#0      AACATACAATGATGAGAGAACAGTGTCCACTCTTAATTGTTTTGTGACCGCAAGGTCGAA 1181
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      ------------------------------------------------------------
                                                                                   

consensus_11994#0      AGTTAAAAAGTGCATACAATCCCTTGAGAGCTGATACTTGGAAAGCCTTGCATAGAATTA 1241
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      ------------------------------------------------------------
                                                                                   

consensus_11994#0      GCTACTCTTGTCATTTCTCTGCCTTTTTGCCCCATTGACCTGTGTTGTTGCATTCGTTGA 1301
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      ------------------------------------------------------------
                                                                                   

consensus_11994#0      GATGTAACAGTGAGGATGAGTAAAACTAAGGAAAGTGTAGAGCTTGTGACGCTTGATGAA 1361
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      ------------------------------------------------------------
                                                                                   

consensus_11994#0      GGCCGGGGAGCGGCAGGCATTTTTGTTAAGATGATATTATCTCACTCCTATATGTCCCTC 1421
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      ------------------------------------------------------------
                                                                                   

consensus_11994#0      ACTCACATAATGCAGTTAATGTGAACTGTTACATGATTCGTAGCTTATCTGCCTTTATGG 1481
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      ------------------------------------------------------------
                                                                                   

consensus_11994#0      CTCATGCAAACTGTAACTCTGGGAGACTGGGACTGAAAGTCGTTATTTGCTTCGTGATGA 1541
consensus_11994#2      ------------------------------------------------------------
consensus_11994#1      ------------------------------------------------------------
                                                                                   

consensus_11994#0      GTAGCAAAAAAAAAAAAAA 1560
consensus_11994#2      -------------------
consensus_11994#1      -------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)