cluster # 11996

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Oryza sativa
cluster # 11996 cluster # 11996 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11996#0 length = 2381 sequences # 8

consensus_11996#1 length = 571 sequences # 1

consensusID : consensus_11996#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2381
fasta sequence

                              [CCCCCCTTTCCCTCGGCGTAAAAGAAAATCTCCCGGTCTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCCGCCGATCTCCATCGGGCGAGCAGAGCAGAGCAGGGGATCCTGATCTGGAAGAAGCTCCTTCTCTTAATTTCAGAGCCTTAAAACCTTAATACGAGTAACAGTTTGTTGTTTGTTCATCCAAAAGTTTGGGGTTGAACTGAATCCCCATGCCCTCACCTGGTACTAATAGCAGCAGCAGCTTCTGTTTAGGAGGAGGCTAGGAAAAAAAAAAGGAGGATTTTTTTTTTTGTTTTTTTGCGGGGGTTCAGCTGAACAACCCCCATGCATCACGTTAGGTCCGGGCTGGGAAGCCCAGATGCTTCCAGCAATTCTAGTAAGCGGAAGAGGGGCTCCTGCTTCGCGGAGCGGAATATGGATGGTAGGAATTCGATCCGGATAAAGCCCGACGTCAGCGTCAGAGCGCGGGAGAAATGCGGCGGGGGTGGCGGGCATCGCTACGTGATCGATTTGGAGAAGCCGGCGACGTCCGACGATGATGTGGAGTTTGTTTCTTATGCCGGGTTTGGCAACCGGTCTCAGGACCGCTGCTATGCTTCGGCGGAGAATTGCTCGACCGCGGTATCCAGTCAGCTCTGTGTGGAGCGGAATGCTTCGCGTGTAAGCCCTGGTTCAGTTGGTTCGAGTGATACTCTGGACTGCCAGTCACCTATCAAGCCTGATAATTCAGAATCCAGGCATTTGCTGATCGACCTGAATGTACCTCAAGAAGAAAGTCTACATGTTTTCTATGCTCCATCTCAAATAACTTGTCCAACTTTAGTTAATTCTTCGTCATCACACCCTGGAGAATTTTGGAATGGCTCCAGCAATGTTTACAAAAAGGAATGTGGTTCTGGTGTTGGATCATCAAAAGGATCTTCCATTACGGTGGTTGCACCCAGCTCTGCTCCTGATAGTTCGAGGGAAGTTGTGGCTGCATACCAATTTCATGATCCTAAGAATTTGCATGGTAATATACATGCAAGAGAAAACAGCCAGCATGAACATGCAGTGGATAAGTTATGTGGATCAAGCAGTCAATATTTCTTGCCACAGCAAAGATTTTCTGTCAGTTCCTGTGGCAGAAATGACTCATCTTTGGCCTTACAAAAATCAGGTGACAACCATGTTGCCTGCCAATCAGGACAACCACCTCTGGCTGTGCATACTGAGCTCCAACATGACACTTCTATTGTAATATCCAGTGGTGAAGAGAAGGTCCTTTTTGACCTTAATGTGCCAGCTGAAAGCATTGACATGGAATCAACAATAACCAGTAATAGTTTTAGAGATAAGCTAGTGAAAAATGATGGAAGTGAAGAAACAGTAACCGATCATTCTTTCTCCAAGAGAAACGGTGTGCATGCTGAAACTTCTATAGAAGAACGAACTGTTGGAGAACATCATATATCAGTCAGCAAGGATGGAAACACCACATTTTTCCAAGAATCAATAAATAATGAAATTGATAAGGCGCAGTCTTCAGACCTTATAAGTGTTAGCAGCAAACATTTGATTGCAGAAACTCCTCATGTTGACAATATTGTGTGTCCAGAACTGCGAGCATCTCCTGATGGAGCATCAAGTCCTCAAGAGACCTTGATAGGCAATTGTGACAAAATGGTTTGTATTGCAGCTGAGACACTCGTTTCCATTTTCTCAAGTTCTGCATGTACTACAGATTGCCCAGGAACTGACAGTCAGACAGCAGCTGAGGATGTAAACGATGAACCGCAGCACTCTTTGGATTCCTATGAGG-AAATTGTATTGAATGTAGAAGAGATCAGAGATGACGGGGAATCCATCCCTGTGATTCCACCTGATAAGGATGGACCGTCTTGTGGGATCAAGCTAAGAAGAGGAAGAGGACTGAGAAATTTTCTGAGGGAGATAATGCCTAGACTTGTTTCTCTTTCACGGCATGAGATATGCGATGATTTGCATGCTATAGGTTA-CGAG--CCCCGGAAAACT-CGATCTAGG-AAAACTTTT-GGGGCTC--AAGGTT-CATCTTC-AACT--AGAGG-AAGGCCG-CCCAAAC-ATCGT-CCCACTGCCAGG-AAATGATCAACAGCATTT-CAA-GTTCATACTAGGATGCCACGAGACGAGCAATTCAGAAGATGAAATATAATTTTAACCTTGTGAATATTCATGTGTGTTGTGCGCATCTTCAAACTCGGTTTGTTACTAGTCACTAAATTGAGGATATTTTCTTTATTCCTTTTACCTCTTGGGAGTGCTGTGGGCCGTTAGCTTCAAATTTGAGTTCAGCATTGGCAATGAAGGCATAGTCATACCATTATAAAATCTCAGAATTTTGATCTTTTAAGTATTAACCAAAAA]

[+] EMBL AK100717             [CCCCCCTTTCCCTCGGCGTAAAAGAAAATCTCCCGGTCTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCCGCCGATCTCCATCGGGCGAGCAGAGCAGAGCAGGGGATCCTGATCTGGAAGAAGCTCCTTCTCTTAATTTCAGAGCCTTAAAACCTTAATACGAGTAACAGTTTGTTGTTTGTTCATCCAAAAGTTTGGGGTTGAACTGAATCCCCATGCCCTCACCTGGTACTAATAGCAGCAGCAGCTTCTGTTTAGGAGGAGGCTAGGAAAAAAAAAAGGAGGATTTTTTTTTTTGTTTTTTTGCGGGGGTTCAGCTGAACAACCCCCATGCATCACGTTAGGTCCGGGCTGGGAAGCCCAGATGCTTCCAGCAATTCTAGTAAGCGGAAGAGGGGCTCCTGCTTCGCGGAGCGGAATATGGATGGTAGGAATTCGATCCGGATAAAGCCCGACGTCAGCGTCAGAGCGCGGGAGAAATGCGGCGGGGGTGGCGGGCATCGCTACGTGATCGATTTGGAGAAGCCGGCGACGTCCGACGATGATGTGGAGTTTGTTTCTTATGCCGGGTTTGGCAACCGGTCTCAGGACCGCTGCTATGCTTCGGCGGAGAATTGCTCGACCGCGGTATCCAGTCAGCTCTGTGTGGAGCGGAATGCTTCGCGTGTAAGCCCTGGTTCAGTTGGTTCGAGTGATACTCTGGACTGCCAGTCACCTATCAAGCCTGATAATTCAGAATCCAGGCATTTGCTGATCGACCTGAATGTACCTCAAGAAGAAAGTCTACATGTTTTCTATGCTCCATCTCAAATAACTTGTCCAACTTTAGTTAATTCTTCGTCATCACACCCTGGAGAATTTTGGAATGGCTCCAGCAATGTTTACAAAAAGGAATGTGGTTCTGGTGTTGGATCATCAAAAGGATCTTCCATTACGGTGGTTGCACCCAGCTCTGCTCCTGATAGTTCGAGGGAAGTTGTGGCTGCATACCAATTTCATGATCCTAAGAATTTGCATGGTAATATACATGCAAGAGAAAACAGCCAGCATGAACATGCAGTGGATAAGTTATGTGGATCAAGCAGTCAATATTTCTTGCCACAGCAAAGATTTTCTGTCAGTTCCTGTGGCAGAAATGACTCATCTTTGGCCTTACAAAAATCAGGTGACAACCATGTTGCCTGCCAATCAGGACAACCACCTCTGGCTGTGCATACTGAGCTCCAACATGACACTTCTATTGTAATATCCAGTGGTGAAGAGAAGGTCCTTTTTGACCTTAATGTGCCAGCTGAAAGCATTGACATGGAATCAACAATAACCAGTAATAGTTTTAGAGATAAGCTAGTGAAAAATGATGGAAGTGAAGAAACAGTAACCGATCATTCTTTCTCCAAGAGAAACGGTGTGCATGCTGAAACTTCTATAGAAGAACGAACTGTTGGAGAACATCATATATCAGTCAGCAAGGATGGAAACACCACATTTTTCCAAGAATCAATAAATAATGAAATTGATAAGGCGCAGTCTTCAGACCTTATAAGTGTTAGCAGCAAACATTTGATTGCAGAAACTCCTCATGTTGACAATATTGTGTGTCCAGAACTGCGAGCATCTCCTGATGGAGCATCAAGTCCTCAAGAGACCTTGATAGGCAATTGTGACAAAATGGTTTGTATTGCAGCTGAGACACTCGTTTCCATTTTCTCAAGTTCTGCATGTACTACAGATTGCCCAGGAACTGACAGTCAGACAGCAGCTGAGGATGTAAACGATGAACCGCAGCACTCTTTGGATTCCTATGAGG AAATTGTATTGAATGTAGAAGAGATCAGAGATGACGGGGAATCCATCCCTGTGATTCCACCTGATAAGGATGGACCGTCTTGTGGGATCAAGCTAAGAAGAGGAAGAGGACTGAGAAATTTTCTGAGGGAGATAATGCCTAGACTTGTTTCTCTTTCACGGCATGAGATATGCGATGATTTGCATGCTATAGGTTA CGAG  CCCCGGAAAACT CGATCTAGG AAAACTTTT GGGGCTC  AAGGTT CATCTTC AACT  AGAGG AAGGCCG CCCAAAC ATCGT CCCACTGCCAGG AAATGATCAACAGCATTT CAA GTTCATACTAGGATGCCACGAGACGAGCAATTCAGAAGATGAAATATAATTTTAACCTTGTGAATATTCATGTGTGTTGTGCGCATCTTCAAACTCGGTTTGTTACTAGTCACTAAATTGAGGATATTTTCTTTATTCCTTTTACCTCTTGGGAGTGCTGTGGGCCGTTAGCTTCAAATTTGAGTTCAGCATTGGCAATGAAGGCATAGTCATACCATTATAAAATCTCAGAATTTTGA                      ]
[+] EMBL CB664323             [                         AAATCTCCCGGTCTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCCGCCGATCTCCATCGGGCGAGCAGAGCAGAGCAGGGGATCCTGATCTGGAAGAAGCTCCTTCTCTTAATTTCAGAGCCTTAAAACCTTAATACGAGTAACAGTTTGTTGTTTGTTCATCCAAAAGTTTGGGGTTGAACTGAATCCCCATGCCCTCACCTGGTACTAATAGCAGCAGCAGCTTCTGTTTAGGAGGAGGCTAGGAAAAAAAAAAGGAGGA TTTTTTTTTTGTTTTTTTGCGGGGGTTCAGCTGAACAACCCCCATGCATCACGTTAGGTCCGGGCTGGGAAGCCCAGATGCTTCCAGCAATTCTAGTAAGCGGAAGAGGGGCTCCTGCTTCGTGGAGCGGAATATGGATGGTAGGAATTCGATCCGGATAAAGCCCGACGTCAGCGTCAGAGCGCGGGAGAAATGCGGCGGGGGTGGCGGGCATCGCTACGTGATCGATTTGGAGAAGCCGGCGACGTCCGACGATGATGTGGAGTTTGTTTCTTATGCCGGGTTTGGCAACCGGTCTCAGGACCGCTGCTATGCTTCGGCGGAGAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OSS14952A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATGGTAATATACATGCAAGAGAAAACAGCCAGCATGAACATGCAGTGGATAAGTTATGTGGATCAAGCAGTCAATATTTCTTGCCACAGCA   ATTTTCTGTCAGTTCCTGTGGCAGAAATGACTCATCTTTGGCCTTACAAAAATCAGGTGACAACCATGTTGCCTGCCAATCAGGACAACCACCTCTGGCTGTGCATACTGAGCTCCAACATGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK060446             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GAAGAGAAGGTCCTTTTTGACCTTAATGTGCCAGCTGAAAGCATTGACATGGAATCAACAATAACCAGTAATAGTTTTAGAGATAAGCTAGTGAAAAATGATGGAAGTGAAGAAACAGTAACCGATCATTCTTTCTCCAAGAGAAACGGTGTGCATGCTGAAACTTCTATAGAAGAACGAACTGTTGGAGAACATCATATATCAGTCAGCAAGGATGGAAACACCACATTTTTCCAAGAATCAATAAATAATGAAATTGATAAGGCGCAGTCCTCAGACCTTATAAGTGTTAGCAGCAAACATTTGATTGCAGAAACTCCTCATGTTGACAATATTGTGTGTCCAGAACTGCGAGCATCTCCTGATGGAGCATCAAGTCCTCAAGAGACCTTGATAGGCAATTGTGACAAAATGGTTTGTATTGCAGCTGAGACACTCGTTTCCATTTTCTCAAGTTCTGCATGTACTACAGATTGCCCAGGAACTGACAGTCAGACAGCAGCTGAGGATGTAAACGATGAACCGCAGCACTCTTTGGATTCCTATGAGG AAATTGTATTGAATGTAGAAGAGATCAGAGATGACGGGGAATCCATCCCTGTGATTCCACCTGATAAGGATGGACCGTCTTGTGGGATCAAGCTAAGAAGAGGAAGAGGACTGAGAAATTTTCTGAGGGAGATAATGCCTAGACTTGTTTCTCTTTCACGGCATGAGATATGCGATGATTTGCATGCTATAGGTTA CGAG  CCCCGGAAAACT CGATCTAGG AAAACTTTT GGGGCTC  AAGGTT CATCTTC AACT  AGAGG AAGGCCG CCCAAAC ATCGT CCCACTGCCAGG AAATGATCAACAGCATTT CAA GTTCATACTAGGATGCCACGAGACGAGCAATTCAGAAGATGAAATATAATTTTAACCTTGTGAATATTCATGTGTGTTGTGCGCATCTTCAAACTCGGTTTGTTACTAGTCACTAAATTGAGGATATTTTCTTTATTCCTTTTACCTCTTGGGAGTGCTGTGGGCCGTTAGCTTCAAATTTGAGTTCAGCATTGGCAATGAAGGCATAGTCATACCATTATAAAATCTCAGAATTTTGATCTTTTAAGTATTAACC     ]
[-] EMBL CB664324             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTCAAGAGACCTTGATAGGCAATTGTGACAAAATGGTTTGTATTGCAGCTGAGACACTCGTTTCCATTTTCTCAAGTTCTGCATGTACTACAGATTGCCCAGGAACTGACAGTCAGACAGCAGCTGAGGATGTAAACGATGAACCGCAGCACTCTTTGGATTCCTATGAGG AAATTGTATTGAATGTAGAAGAGATCAGAGATGACGGGGAATCCATCCCTGTGATTCCACCTGATAAGGATGGACCGTCTTGTGGGATCAAGCTAAGAAGAGGAAGAGGACTGAGAAATTTTCTGAGGGAGATAATGCCTAGACTTGTTTCTCTTTCACGGCATGAGATATGCGATGATTTGCATGCTATAGGTTA CGAG  CCCCGGAAAACT CGATCTAGG AAAACTTTT GGGGCTC  AAGGTT CATCTTC AACT  AGAGG AAGGCCG CCCAAAC ATCGT CCCACTGCCAGG AAATGATCAACAGCATTT CAA GTTCATACTAGGATGCCACGAGACGAGCAATTCAGAAGATGAAATATAATTTTAACCTTGTGAATATTCATGTGTGTTGTGCGCATCTTCAAACTCGGTTTGTTACTAGTCACTAAATTGAGGATATTTTCTTTATTCCTTTTACCTCTTGGGAGTGCTGTGGGCCGTTAGCTTCAAATTTGAGTTCAGCATTGGCAATGAAGGCATAGT                                                   ]
[+] EMBL BI813689             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCAGCACTC GTGGATTTCTATGAGGAAAATTGTATTGAATGTAGAAGAGATCAGAGATGACGGGGAATCCATCCCTGTGATTCCACCTGATAAGGATGGACCGTCTTGTGGGATCAAGCTAAGAAGAGGAAGAGGACTGAGAAATTTTCTGAGGGAGATAATGCCTGGACTTGTTTCTCTTTCACGGCATGAGATATGCGATGATTTGCATGCTATAGGTTA CGAG  CCCCGGAAAACT CGATCTAGG AAAACTTTT GGGGCTC  AAGGTT CATCTTC AACT  AGAGG AAGGCCG CCC AAC ATCGT CCCACTGCCAGG AAATGATCGACAGCATTT CAA GTTCATACTAGGATGCCACGAGACGAGC ATTCAGAAGATGAAATATAATTTTAACCTTGTGAATATTCATGTGTGTTGTGCGCATCTTCAAACTCGGTTTGTTACTAGTCACTAAATTGAGGATATTTTCTTTATTCCTTTTACCTCTTGGGAGTGCTGTGGGCCGTTAGCTTCAAATTTGAGTTCAGCATTGGCAATGAAGGCATAGTCATACCA  AAAAAA                                    ]
[+] EMBL BM421132             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATCAAGCTAAGAAGAGGAAGAGGACTGAGAAATTTTCTGAGGGAGATAATGCCTGGACTTGTTTCTCTTTCACGGCATGAGATATGCGATGATTTGCATGCTATAGGTTA CGAG  CCCCGGAAAACT CGATCTAGG AAAACTTTT GGGGCTC  AAGGTT CATCTTC AACT  AGAGG AAGGCCG CCCAAAC ATCGT CCCACTGCCAGG AAATGATCGACAGCATTT CAA GTTCATACTAGGATGCCACGAGACGAGCAATTCAGAAGATGAAATATAATTTTAACCTTGTGAATATTCATGTGTGTTGTGCGCATCTTCAAACTCGGTTTGTTACTAGTCACTAAATTGAGGATATTTTCTTTATTCCTTTTAaaaaaaa                                                                                                              ]
[+] EMBL AU075516             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             atTAGGTTACCGAGNCCCCCGGAAAACTCCGATCTAGGNAAACCTTTTNGGGGCTCCAAAGGTTCCATCTTCAAACTTAAGAGGAAANGCCGCCCCAAACAATCGTCCCCACTGCCAGGAAAATGATCAACAGCATTTNCAAGGTTCATACTAGGATGCCACGAGACGAGCAATTCAGAAGATGAAATATAATTTTAACCTTGTGAATATTCATGTGTGTTGTGCGCATCTTCAAACTCGGTTTGTTACTAGTCACTAAATTGAGGATATTTTCTTTATTCCTTTTACCTCTTGGGAGTGCTGTGGGCCGTTAGCTTCAAATTTGAGTTCAGCATTGGCAATGAAGGCATAGTCATACCATTATAAAATCTCAGAATTTTGATCTTTTAAGTATTAAAAAAAAA]




>consensus_11996#0
CCCCCCTTTCCCTCGGCGTAAAAGAAAATCTCCCGGTCTCTCGTCTCCTCCGCTCCTTGC
GCCATCTCGCCGCCGATCTCCATCGGGCGAGCAGAGCAGAGCAGGGGATCCTGATCTGGA
AGAAGCTCCTTCTCTTAATTTCAGAGCCTTAAAACCTTAATACGAGTAACAGTTTGTTGT
TTGTTCATCCAAAAGTTTGGGGTTGAACTGAATCCCCATGCCCTCACCTGGTACTAATAG
CAGCAGCAGCTTCTGTTTAGGAGGAGGCTAGGAAAAAAAAAAGGAGGATTTTTTTTTTTG
TTTTTTTGCGGGGGTTCAGCTGAACAACCCCCATGCATCACGTTAGGTCCGGGCTGGGAA
GCCCAGATGCTTCCAGCAATTCTAGTAAGCGGAAGAGGGGCTCCTGCTTCGCGGAGCGGA
ATATGGATGGTAGGAATTCGATCCGGATAAAGCCCGACGTCAGCGTCAGAGCGCGGGAGA
AATGCGGCGGGGGTGGCGGGCATCGCTACGTGATCGATTTGGAGAAGCCGGCGACGTCCG
ACGATGATGTGGAGTTTGTTTCTTATGCCGGGTTTGGCAACCGGTCTCAGGACCGCTGCT
ATGCTTCGGCGGAGAATTGCTCGACCGCGGTATCCAGTCAGCTCTGTGTGGAGCGGAATG
CTTCGCGTGTAAGCCCTGGTTCAGTTGGTTCGAGTGATACTCTGGACTGCCAGTCACCTA
TCAAGCCTGATAATTCAGAATCCAGGCATTTGCTGATCGACCTGAATGTACCTCAAGAAG
AAAGTCTACATGTTTTCTATGCTCCATCTCAAATAACTTGTCCAACTTTAGTTAATTCTT
CGTCATCACACCCTGGAGAATTTTGGAATGGCTCCAGCAATGTTTACAAAAAGGAATGTG
GTTCTGGTGTTGGATCATCAAAAGGATCTTCCATTACGGTGGTTGCACCCAGCTCTGCTC
CTGATAGTTCGAGGGAAGTTGTGGCTGCATACCAATTTCATGATCCTAAGAATTTGCATG
GTAATATACATGCAAGAGAAAACAGCCAGCATGAACATGCAGTGGATAAGTTATGTGGAT
CAAGCAGTCAATATTTCTTGCCACAGCAAAGATTTTCTGTCAGTTCCTGTGGCAGAAATG
ACTCATCTTTGGCCTTACAAAAATCAGGTGACAACCATGTTGCCTGCCAATCAGGACAAC
CACCTCTGGCTGTGCATACTGAGCTCCAACATGACACTTCTATTGTAATATCCAGTGGTG
AAGAGAAGGTCCTTTTTGACCTTAATGTGCCAGCTGAAAGCATTGACATGGAATCAACAA
TAACCAGTAATAGTTTTAGAGATAAGCTAGTGAAAAATGATGGAAGTGAAGAAACAGTAA
CCGATCATTCTTTCTCCAAGAGAAACGGTGTGCATGCTGAAACTTCTATAGAAGAACGAA
CTGTTGGAGAACATCATATATCAGTCAGCAAGGATGGAAACACCACATTTTTCCAAGAAT
CAATAAATAATGAAATTGATAAGGCGCAGTCTTCAGACCTTATAAGTGTTAGCAGCAAAC
ATTTGATTGCAGAAACTCCTCATGTTGACAATATTGTGTGTCCAGAACTGCGAGCATCTC
CTGATGGAGCATCAAGTCCTCAAGAGACCTTGATAGGCAATTGTGACAAAATGGTTTGTA
TTGCAGCTGAGACACTCGTTTCCATTTTCTCAAGTTCTGCATGTACTACAGATTGCCCAG
GAACTGACAGTCAGACAGCAGCTGAGGATGTAAACGATGAACCGCAGCACTCTTTGGATT
CCTATGAGGAAATTGTATTGAATGTAGAAGAGATCAGAGATGACGGGGAATCCATCCCTG
TGATTCCACCTGATAAGGATGGACCGTCTTGTGGGATCAAGCTAAGAAGAGGAAGAGGAC
TGAGAAATTTTCTGAGGGAGATAATGCCTAGACTTGTTTCTCTTTCACGGCATGAGATAT
GCGATGATTTGCATGCTATAGGTTACGAGCCCCGGAAAACTCGATCTAGGAAAACTTTTG
GGGCTCAAGGTTCATCTTCAACTAGAGGAAGGCCGCCCAAACATCGTCCCACTGCCAGGA
AATGATCAACAGCATTTCAAGTTCATACTAGGATGCCACGAGACGAGCAATTCAGAAGAT
GAAATATAATTTTAACCTTGTGAATATTCATGTGTGTTGTGCGCATCTTCAAACTCGGTT
TGTTACTAGTCACTAAATTGAGGATATTTTCTTTATTCCTTTTACCTCTTGGGAGTGCTG
TGGGCCGTTAGCTTCAAATTTGAGTTCAGCATTGGCAATGAAGGCATAGTCATACCATTA
TAAAATCTCAGAATTTTGATCTTTTAAGTATTAACCAAAAA

consensusID : consensus_11996#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [CTACAGATTGCCCCAGGAACCTGACAGTCAGACAGCAGCTGGGCCTACCCATCCCAACCTGGGGTATGCTGGGATTCGCGTAAACGATGAACCGCAGCACTCGTTGGATTCCTATGAGGAAATTGTATTGAATGTAGAAGAGATCAGAGATGACGGGGAATCCATCCCTGTGATTCCACCTGATAAGGATGGACCGTCTTGTGGGATCAAGCTAAGAAGAGGAAGAGGACTGAGAAATTTTCTGAGGGAGATAATGCCTGGACTTGTTTCTCTTTCACGGCATGAGATATGCGATGATTTGCATGCTATAGGTTACGAGCCCCGGAAAACTCGATCTAGGAAAACTTTTGGGGCTCAAGGTTCATCTTCAACTAGAGGAAGGCCGCCCAACATCGTCCCACTGCCAGGAAATGATCGACAGCATTTCAAGTTCATACTAGGATGCCACGAGACGAGCATTCAGAAGATGAAATATAATTTTAACCTTGTGAATATTCATGTGTGTTGTGCGCATCTTCAAACTCGGTTTGTTACTAGTCACTAAATTGAGGATATTTTCTTTATTCAAAAA]

[+] EMBL BM418747             [CTACAGATTGCCCCAGGAACCTGACAGTCAGACAGCAGCTGGGCCTACCCATCCCAACCTGGGGTATGCTGGGATTCGCGTAAACGATGAACCGCAGCACTCGTTGGATTCCTATGAGGAAATTGTATTGAATGTAGAAGAGATCAGAGATGACGGGGAATCCATCCCTGTGATTCCACCTGATAAGGATGGACCGTCTTGTGGGATCAAGCTAAGAAGAGGAAGAGGACTGAGAAATTTTCTGAGGGAGATAATGCCTGGACTTGTTTCTCTTTCACGGCATGAGATATGCGATGATTTGCATGCTATAGGTTACGAGCCCCGGAAAACTCGATCTAGGAAAACTTTTGGGGCTCAAGGTTCATCTTCAACTAGAGGAAGGCCGCCCAACATCGTCCCACTGCCAGGAAATGATCGACAGCATTTCAAGTTCATACTAGGATGCCACGAGACGAGCATTCAGAAGATGAAATATAATTTTAACCTTGTGAATATTCATGTGTGTTGTGCGCATCTTCAAACTCGGTTTGTTACTAGTCACTAAATTGAGGATATTTTCTTTATTCAAAAA]




>consensus_11996#1
CTACAGATTGCCCCAGGAACCTGACAGTCAGACAGCAGCTGGGCCTACCCATCCCAACCT
GGGGTATGCTGGGATTCGCGTAAACGATGAACCGCAGCACTCGTTGGATTCCTATGAGGA
AATTGTATTGAATGTAGAAGAGATCAGAGATGACGGGGAATCCATCCCTGTGATTCCACC
TGATAAGGATGGACCGTCTTGTGGGATCAAGCTAAGAAGAGGAAGAGGACTGAGAAATTT
TCTGAGGGAGATAATGCCTGGACTTGTTTCTCTTTCACGGCATGAGATATGCGATGATTT
GCATGCTATAGGTTACGAGCCCCGGAAAACTCGATCTAGGAAAACTTTTGGGGCTCAAGG
TTCATCTTCAACTAGAGGAAGGCCGCCCAACATCGTCCCACTGCCAGGAAATGATCGACA
GCATTTCAAGTTCATACTAGGATGCCACGAGACGAGCATTCAGAAGATGAAATATAATTT
TAACCTTGTGAATATTCATGTGTGTTGTGCGCATCTTCAAACTCGGTTTGTTACTAGTCA
CTAAATTGAGGATATTTTCTTTATTCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11996#0      CCCCCCTTTCCCTCGGCGTAAAAGAAAATCTCCCGGTCTCTCGTCTCCTCCGCTCCTTGC 60
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      GCCATCTCGCCGCCGATCTCCATCGGGCGAGCAGAGCAGAGCAGGGGATCCTGATCTGGA 120
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      AGAAGCTCCTTCTCTTAATTTCAGAGCCTTAAAACCTTAATACGAGTAACAGTTTGTTGT 180
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      TTGTTCATCCAAAAGTTTGGGGTTGAACTGAATCCCCATGCCCTCACCTGGTACTAATAG 240
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      CAGCAGCAGCTTCTGTTTAGGAGGAGGCTAGGAAAAAAAAAAGGAGGATTTTTTTTTTTG 300
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      TTTTTTTGCGGGGGTTCAGCTGAACAACCCCCATGCATCACGTTAGGTCCGGGCTGGGAA 360
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      GCCCAGATGCTTCCAGCAATTCTAGTAAGCGGAAGAGGGGCTCCTGCTTCGCGGAGCGGA 420
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      ATATGGATGGTAGGAATTCGATCCGGATAAAGCCCGACGTCAGCGTCAGAGCGCGGGAGA 480
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      AATGCGGCGGGGGTGGCGGGCATCGCTACGTGATCGATTTGGAGAAGCCGGCGACGTCCG 540
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      ACGATGATGTGGAGTTTGTTTCTTATGCCGGGTTTGGCAACCGGTCTCAGGACCGCTGCT 600
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      ATGCTTCGGCGGAGAATTGCTCGACCGCGGTATCCAGTCAGCTCTGTGTGGAGCGGAATG 660
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      CTTCGCGTGTAAGCCCTGGTTCAGTTGGTTCGAGTGATACTCTGGACTGCCAGTCACCTA 720
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      TCAAGCCTGATAATTCAGAATCCAGGCATTTGCTGATCGACCTGAATGTACCTCAAGAAG 780
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      AAAGTCTACATGTTTTCTATGCTCCATCTCAAATAACTTGTCCAACTTTAGTTAATTCTT 840
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      CGTCATCACACCCTGGAGAATTTTGGAATGGCTCCAGCAATGTTTACAAAAAGGAATGTG 900
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      GTTCTGGTGTTGGATCATCAAAAGGATCTTCCATTACGGTGGTTGCACCCAGCTCTGCTC 960
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      CTGATAGTTCGAGGGAAGTTGTGGCTGCATACCAATTTCATGATCCTAAGAATTTGCATG 1020
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      GTAATATACATGCAAGAGAAAACAGCCAGCATGAACATGCAGTGGATAAGTTATGTGGAT 1080
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      CAAGCAGTCAATATTTCTTGCCACAGCAAAGATTTTCTGTCAGTTCCTGTGGCAGAAATG 1140
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      ACTCATCTTTGGCCTTACAAAAATCAGGTGACAACCATGTTGCCTGCCAATCAGGACAAC 1200
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      CACCTCTGGCTGTGCATACTGAGCTCCAACATGACACTTCTATTGTAATATCCAGTGGTG 1260
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      AAGAGAAGGTCCTTTTTGACCTTAATGTGCCAGCTGAAAGCATTGACATGGAATCAACAA 1320
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      TAACCAGTAATAGTTTTAGAGATAAGCTAGTGAAAAATGATGGAAGTGAAGAAACAGTAA 1380
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      CCGATCATTCTTTCTCCAAGAGAAACGGTGTGCATGCTGAAACTTCTATAGAAGAACGAA 1440
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      CTGTTGGAGAACATCATATATCAGTCAGCAAGGATGGAAACACCACATTTTTCCAAGAAT 1500
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      CAATAAATAATGAAATTGATAAGGCGCAGTCTTCAGACCTTATAAGTGTTAGCAGCAAAC 1560
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      ATTTGATTGCAGAAACTCCTCATGTTGACAATATTGTGTGTCCAGAACTGCGAGCATCTC 1620
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      CTGATGGAGCATCAAGTCCTCAAGAGACCTTGATAGGCAATTGTGACAAAATGGTTTGTA 1680
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      TTGCAGCTGAGACACTCGTTTCCATTTTCTCAAGTTCTGCATGTACTACAGATTGCCCAG 1740
consensus_11996#1      -------CTACAGA-TTGCCCCAGGAACCTGACAGTCAGACAGCAGCTGGGCCTACCCA- 51
                                * * * * *   *      ** *   ** *   * *     *  * **** 

consensus_11996#0      GAACTGACAGTCAGACAGCAGCTGAGGAT---GTAAACGATGAACCGCAGCACTCTTTGG 1797
consensus_11996#1      ----TCCCAACCTGGGGTATGCTGGGATTCGCGTAAACGATGAACCGCAGCACTCGTTGG 107
                           *  **  * *      **** *  *   *********************** ****

consensus_11996#0      ATTCCTATGAGGAAATTGTATTGAATGTAGAAGAGATCAGAGATGACGGGGAATCCATCC 1857
consensus_11996#1      ATTCCTATGAGGAAATTGTATTGAATGTAGAAGAGATCAGAGATGACGGGGAATCCATCC 167
                       ************************************************************

consensus_11996#0      CTGTGATTCCACCTGATAAGGATGGACCGTCTTGTGGGATCAAGCTAAGAAGAGGAAGAG 1917
consensus_11996#1      CTGTGATTCCACCTGATAAGGATGGACCGTCTTGTGGGATCAAGCTAAGAAGAGGAAGAG 227
                       ************************************************************

consensus_11996#0      GACTGAGAAATTTTCTGAGGGAGATAATGCCTAGACTTGTTTCTCTTTCACGGCATGAGA 1977
consensus_11996#1      GACTGAGAAATTTTCTGAGGGAGATAATGCCTGGACTTGTTTCTCTTTCACGGCATGAGA 287
                       ******************************** ***************************

consensus_11996#0      TATGCGATGATTTGCATGCTATAGGTTACGAGCCCCGGAAAACTCGATCTAGGAAAACTT 2037
consensus_11996#1      TATGCGATGATTTGCATGCTATAGGTTACGAGCCCCGGAAAACTCGATCTAGGAAAACTT 347
                       ************************************************************

consensus_11996#0      TTGGGGCTCAAGGTTCATCTTCAACTAGAGGAAGGCCGCCCAAACATCGTCCCACTGCCA 2097
consensus_11996#1      TTGGGGCTCAAGGTTCATCTTCAACTAGAGGAAGGCCGCCCAA-CATCGTCCCACTGCCA 406
                       ******************************************* ****************

consensus_11996#0      GGAAATGATCAACAGCATTTCAAGTTCATACTAGGATGCCACGAGACGAGCAATTCAGAA 2157
consensus_11996#1      GGAAATGATCGACAGCATTTCAAGTTCATACTAGGATGCCACGAGACGAGCA-TTCAGAA 465
                       ********** ***************************************** *******

consensus_11996#0      GATGAAATATAATTTTAACCTTGTGAATATTCATGTGTGTTGTGCGCATCTTCAAACTCG 2217
consensus_11996#1      GATGAAATATAATTTTAACCTTGTGAATATTCATGTGTGTTGTGCGCATCTTCAAACTCG 525
                       ************************************************************

consensus_11996#0      GTTTGTTACTAGTCACTAAATTGAGGATATTTTCTTTATTCCTTTTACCTCTTGGGAGTG 2277
consensus_11996#1      GTTTGTTACTAGTCACTAAATTGAGGATATTTTCTTTATTCAAAAA-------------- 571
                       *****************************************                   

consensus_11996#0      CTGTGGGCCGTTAGCTTCAAATTTGAGTTCAGCATTGGCAATGAAGGCATAGTCATACCA 2337
consensus_11996#1      ------------------------------------------------------------
                                                                                   

consensus_11996#0      TTATAAAATCTCAGAATTTTGATCTTTTAAGTATTAACCAAAAA 2381
consensus_11996#1      --------------------------------------------