cluster # 12002

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Oryza sativa
cluster # 12002 cluster # 12002 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12002#0 length = 733 sequences # 2
consensus_12002#1 length = 363 sequences # 4

consensus_12002#2 length = 304 sequences # 2
consensus_12002#3 length = 82 sequences # 1

consensusID : consensus_12002#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 733
fasta sequence

                              [GCACGAGGCCGACATGTTTTTTTTGTGTATGAAGATAGACAAACCTAAGCTCTCGTTGCCTTAATGGAGTAGTAGCTTTTATTGAGGGATGAATTTGCTTGCTAGATCTGCCAACCAATTATACCCTAGTTCAAGTTTACTCTTGTTTCTTCTTACTACCTTGTTTCAAACGAACAATTGTGGCTAATTAATCACTCCTACTTGGGCTTGCAAAATGTGCCTCTTGGGGATTTTGATTGCTACAGTGTTACTACATCTTTTGTTCTTCAGATGCTTCTCGATTCTACTCTTGCTACCTCATCTATTGCTACTAGTACATTACTGCATCTGTATGCTAAATTGCATTATTTAATTGGGTCTTGCTGTCTACTTTTTAGCTTCATATTAATTCTAGCTCAGGCTTTGCTCCAGTACTACTAGCGATTGTTTACCTCTTTTTTAAATGGGTTTTGTGATGATTTACAACTTGTAGCTAGGCTGGTGCTCTTTCATCTAGTAACTGCATCCTCGATAATATCATGGTTTAAAACTGCACGTTAAAACCAAGCTGACTAGGTATTCCTCCTCACATGACTTAAACCTGAGGTAATAAGGATTTGTGCTCCACGTATTTTTGGTTGACCATTCACAATGCTTTGTTTAGGACCTATTCTTAGCTTAATCTGTGATGCAATAATTGTCTGCACTGTTTTGCCTTAGAATATAGTTGATCTACAAGCATCATGGTAACTGA]

[+] EMBL CF303190             [GCACGAGGCCGACATGTTTTTTTTGTGTATGAAGATAGACAAACCTAAGCTCTCGTTGCCTTAATGGAGTAGTAGCTTTTATTGAGGGATGAATTTGCTTGCTAGATCTGCCAACCAATTATACCCTAGTTCAAGTTTACTCTTGTTTCTTCTTACTACCTTGTTTCAAACGAACAATTGTGGCTAATTAATCACTCCTACTTGGGCTTGCAAAATGTGCCTCTTGGGGATTTTGATTGCTACAGTGTTACTACATCTTTTGTTCTTCAGATGCTTCTCGATTCTACTCTTGCTACCTCATCTATTGCTACTAGTACATTACTGCATCTGTATGCTAAATTGCATTATTTAATTGGGTCTTGCTGTCTACTTTTTAGCTTCATATTAATTCTAGCTCAGGCTTTGCTCCAGTACTACTAGCGATTGTTTACCTCTTTTTTAAATGGGTTTTGTGATGATTTACAACTTGTAGCTAGGCTGGTGCTCTTTCATCTAGTAACTGCATCCTCGATAATATCATGGTTTAAAACTGCACGTTAAAACCAAGCTGACTAGGTATTCCTCCTCACATGACTTAAACCTGAGGTAATAAGGATTTGTGCTCCACGTATTTTTGGTTGACCATTCACAATGCTTTGTTTAGGACCTATTCTTAGCTTAATCTGTGATGCAATAATTGTCTGCACTGTTTTGCCTTAGAATATAGTTGATCTACAAGCATCATGGTAACTGA]
[+] EMBL CF303169             [   CGAGGCCGACATGTTTTTTTTGTGTATGAAGATAGACAAACCTAAGCTCTCGTTGCCTTAATGGAGTAGTAGCTTTTATTGAGGGATGAATTTGCTTGCTAGATCTGCCAACCAATTATACCCTAGTTCAAGTTTACTCTTGTTTCTTCTTACTACCTTGTTTCAAACGAACAATTGTGGCTAATTAATCACTCCTACTTGGGCTTGCAAAATGTGCCTCTTGGGGATTTTGATTGCTACAGTGTTACTACATCTTTTGTTCTTCAGATGCTTCTCGATTCTACTCTTGCTACCTCATCTATTGCTACTAGTACATTACTGCATCTGTATGCTAAATTGCATTATTTAATTGGGTCTTGCTGTCTACTTTTTAGCTTCATATTAATTCTAGCTCAGGCTTTGCTCCAGTACTACTAGCGATTGTTTACCTCTTTTTTAAATGGGTTTTGTGATGATTTACAACTTGTAGCTAGGCTGGTGCTCTTTCATCTAGTAACTGCATCCTCGATAATATCATGGTTTAAAACT                                                                                                                                                                                                          ]




>consensus_12002#0
GCACGAGGCCGACATGTTTTTTTTGTGTATGAAGATAGACAAACCTAAGCTCTCGTTGCC
TTAATGGAGTAGTAGCTTTTATTGAGGGATGAATTTGCTTGCTAGATCTGCCAACCAATT
ATACCCTAGTTCAAGTTTACTCTTGTTTCTTCTTACTACCTTGTTTCAAACGAACAATTG
TGGCTAATTAATCACTCCTACTTGGGCTTGCAAAATGTGCCTCTTGGGGATTTTGATTGC
TACAGTGTTACTACATCTTTTGTTCTTCAGATGCTTCTCGATTCTACTCTTGCTACCTCA
TCTATTGCTACTAGTACATTACTGCATCTGTATGCTAAATTGCATTATTTAATTGGGTCT
TGCTGTCTACTTTTTAGCTTCATATTAATTCTAGCTCAGGCTTTGCTCCAGTACTACTAG
CGATTGTTTACCTCTTTTTTAAATGGGTTTTGTGATGATTTACAACTTGTAGCTAGGCTG
GTGCTCTTTCATCTAGTAACTGCATCCTCGATAATATCATGGTTTAAAACTGCACGTTAA
AACCAAGCTGACTAGGTATTCCTCCTCACATGACTTAAACCTGAGGTAATAAGGATTTGT
GCTCCACGTATTTTTGGTTGACCATTCACAATGCTTTGTTTAGGACCTATTCTTAGCTTA
ATCTGTGATGCAATAATTGTCTGCACTGTTTTGCCTTAGAATATAGTTGATCTACAAGCA
TCATGGTAACTGA

consensusID : consensus_12002#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 363
fasta sequence

                              [GTCACTGCCCTCCACGTCTTCGGCAAGCTCCTACCGGTCCCGCACCGCCCGCCT-CCGCCTCCGCCTGATCCATCCCCCTTTCTCTTGTTCCCCTACTTTCTCTCTCATCAGATCAGATCGGATCGGATCGGATCGGATCAGATGACATGTTTTTTTTTGTGTATGAAGAAAGACAAACCTAAGCTTAGTGGAGTAGTAGGGATATGGATCTGCTTGCTGAGTTCTTGCTAGATCTGCCAACCAATTGTACCCTACCCTAGTTCAACTTTACTCTTGTTTACCTTGTTTCAGACGAACAATTGTGGCTAATTACTCCTACTTGTGCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL C29101               [GTCACTGCCCTCCACGTCTTCGGCAAGCTCCTACCCGTCCCGCACCGCCCGCCTCCCGCCTCCGCCTGATCCATCCCCCTTTCTCTTGTTCCCCTACTTTCTCTCTCATCAGATCAGATCGGATCGGATCGGATCGGATCAGATGACATGTTTTTTTTTGTGTATGAAGAAAGACAAACCTAAGCTTAGTGGAGTAGTAGGGATATGGATCTGCTTGCTGAGTTCTTGCTAGATCTGCCAACCAATTGTACCCTACCCTAGTTCAACTTTACTCTTGTTTACCTTGTTTCAGACGAACAATTGTGGCTAATTACTCCTACTT                                          ]
[+] EMBL BI795691             [             ACGTCTTCGGCAAGCT CTACCGCTCCCGCAC  CCCGCCT CCGCCTCCGCCTGATCCATCCCCCTTTCTCTTGTTCCCCTACTTTCTCTCTCATCAGATCA     GATCGGATCGGATCGGATCAGATGACATGTTTTTTTTTGTGTATGAAGAAAGACAAACCTAAGCTTAGTGGAGTAGTAGGGATATGGATCTGCTTGCTGAGTTCTTGCTAGATCTGCCAACCAATTGTACCCTACCCTAGTTCAACTTTACTCTTGTTTACCTTGTTTCAGACGAAC ATTGTGGCTAATTACTCCTACTTGTGCTTGCAAAAA                             ]
[+] EMBL C99596               [                                  CGGTCCCGAACCG CCGCNT CCGCCTCCGCCTGATCCATCCCCCTTTCTCTTGTTCCCCNACTTTCTCTCTCATCAGATCAGATCGGATCGGATCGGATCGGATCAGATGACATGTTTTTTTTTGTGTATGAAGAAAGACAAACCTAAGCTTAGTGGAGTAGTAGGGATATGGATCTGCTTGCTGAGTTCTTGCTAGATCTGCCAACCAATTGTACCCTACCCTAGTTCAACTTTACTCTTGTTTACCTTNTTTCAGACGAACAATTGTGGCTAATNACTCCTACTTGNGCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU222596             [                                                                          CCCCCTTTCTCTTGTTCCCCTACTTTCTCTCTCATCAGATCAGATCGGATCGGATCGGATCGGATCAGATGACATGTTTTTTTTTGTGTATGAAGAAAGACAAACCTAAGCTTAGTGGAGTAGTAGGGATATGGATCTGCTTGCTGAGTTCTTGCTAGATCTGCCAACCAATTGTACCCTACCCTAGTTCAACTTTACTCTTGTTTACCTTGTTTCAGACGAACAATTGTGGCTAATTACTCCTACTTGTGCTTGCA                                 ]




>consensus_12002#1
GTCACTGCCCTCCACGTCTTCGGCAAGCTCCTACCGGTCCCGCACCGCCCGCCTCCGCCT
CCGCCTGATCCATCCCCCTTTCTCTTGTTCCCCTACTTTCTCTCTCATCAGATCAGATCG
GATCGGATCGGATCGGATCAGATGACATGTTTTTTTTTGTGTATGAAGAAAGACAAACCT
AAGCTTAGTGGAGTAGTAGGGATATGGATCTGCTTGCTGAGTTCTTGCTAGATCTGCCAA
CCAATTGTACCCTACCCTAGTTCAACTTTACTCTTGTTTACCTTGTTTCAGACGAACAAT
TGTGGCTAATTACTCCTACTTGTGCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

consensusID : consensus_12002#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 304
fasta sequence

                              [CCCCCTTTCTCTTGTTCCCCTACTTTCTCTCTCATCAGATCAGATCGGATCGGATCCGACATGTTTTTTTTGTGTATGAAGATAGACAAACCTAAGCTCTCGTTGCCTTAATGGAGTAGTAGCTTTTATTGAGGGATGAATTTGCTTGCTAGATCTGCCAACCAATTATACCCTAGTTCAAGTTTACTCTTGTTTCTTCTTACTACCTTGTTTCAAACGAACAATTGTGGCTAATTAATCACTCCTACTTGGGCTTGCNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BE039896             [CCCCCTTTCTCTTGTTCCCCTACTTTCTCTCTCATCAGATCAGATCGGATCGGATCCGACATGTTTTTTTTGTGTATGAAGATAGACAAACCTAAGCTCTCGTTGCCTTAATGGAGTAGTAGCTTTTATTGAGGGATGAATTTGCTTGCTAGATCTGCCAACCAATTATACCCTAGTTCAAGTTTACTCTTGTTTCTTCTTACTACCTTGTTTCAAACGAACAATTGTGGCTAATTAATCACTCCTACTTGGGCTTGCNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA753818             [CCCCCTTTCTCTTGTTCCCCTACTTTCTCTCTCATCAGATCAGATCGGATCGGATCCGACATGTTTTTTTTGTGTATGAAGATAGACAAACCTAAGCTCTCGTTGCCTTAATGGAGTAGTAGCTTTTATTGAGGGATGAATTTGCTTGCTAGATCTGCCAACCAATTATACCCTAGTTCAAGTTTACTCTTGTTTCTTCTTACTACCTTGTTTCAAACGAACAATTGTGGCTAATTAATCACTCCTACTTGGGCTTGGCAAAAAAAAAAAAAAA                              ]




>consensus_12002#2
CCCCCTTTCTCTTGTTCCCCTACTTTCTCTCTCATCAGATCAGATCGGATCGGATCCGAC
ATGTTTTTTTTGTGTATGAAGATAGACAAACCTAAGCTCTCGTTGCCTTAATGGAGTAGT
AGCTTTTATTGAGGGATGAATTTGCTTGCTAGATCTGCCAACCAATTATACCCTAGTTCA
AGTTTACTCTTGTTTCTTCTTACTACCTTGTTTCAAACGAACAATTGTGGCTAATTAATC
ACTCCTACTTGGGCTTGCNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

consensusID : consensus_12002#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 82
fasta sequence

                              [CCCTTTCTTGTTCCCCCTACTTTCTCTCTCATCAGATCAGATCGGATCGGATCCGACATGCCCCCCCCCCGTATGAAGATAG]

[+] EMBL AA749932             [CCCTTTCTTGTTCCCCCTACTTTCTCTCTCATCAGATCAGATCGGATCGGATCCGACATGCCCCCCCCCCGTATGAAGATAG]




>consensus_12002#3
CCCTTTCTTGTTCCCCCTACTTTCTCTCTCATCAGATCAGATCGGATCGGATCCGACATG
CCCCCCCCCCGTATGAAGATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12002#1      ------------------------------------------------------------
consensus_12002#3      ------------------------------------------------------------
consensus_12002#2      ------------------------------------------------------------
consensus_12002#0      GCACGAGGCCGACATGTTTTTTTTGTGTATGAAGATAGACAAACCTAAGCTCTCGTTGCC 60
                                                                                   

consensus_12002#1      ------------------------------------------------------------
consensus_12002#3      ------------------------------------------------------------
consensus_12002#2      ------------------------------------------------------------
consensus_12002#0      TTAATGGAGTAGTAGCTTTTATTGAGGGATGAATTTGCTTGCTAGATCTGCCAACCAATT 120
                                                                                   

consensus_12002#1      --------------------------------------GTCACTGCCCTCCACGTCTTCG 22
consensus_12002#3      ------------------------------------------------------------
consensus_12002#2      ------------------------------------------------------------
consensus_12002#0      ATACCCTAGTTCAAGTTTACTCTTGTTTCTTCTTACTACCTTGTTTCAAACGAACAATTG 180
                                                                                   

consensus_12002#1      GCAAGCTCCTACCGGTCCCGCACCGCCCGCCTCCGCCTCCGCCTGATCCATCCCCCTTTC 82
consensus_12002#3      -----------------------------------------------------CCCTTTC 7
consensus_12002#2      ---------------------------------------------------CCCCCTTTC 9
consensus_12002#0      TGGCTAATTAATCACTCCTACTTGGGCTTGCAAAATGTGCCTCTTGGGGATTTTGATTGC 240
                                                                               ** *

consensus_12002#1      TCTTGTTCCCCTACTTTCTCT-CTCATCAGAT-CAGATCGGATCGGATCGGATCGGATCA 140
consensus_12002#3      TTGT-TCCCCCTACTTTCTCT-CTCATCAGAT-CAGATCGGATCGGATC----------- 53
consensus_12002#2      TCTTGTTCCCCTACTTTCTCT-CTCATCAGAT-CAGATCGGATCGGATC----------- 56
consensus_12002#0      TACAGTGTTACTACATCTTTTGTTCTTCAGATGCTTCTCGATTCTACTCTTGCT-----A 295
                       *    *    **** *  * *  ** ****** *   ***  **   **           

consensus_12002#1      GATGACATGTTTTTTTTTGTGTATGAAGAAAGACAAACCTAAGCTT--AGTGGAGTAGTA 198
consensus_12002#3      --CGACATGCCCCCCCCC-CGTATGAAGATAG---------------------------- 82
consensus_12002#2      --CGACATGTTTTTTTTG-TGTATGAAGATAGACAAACCTAAGCTCTCGTTGCCTTAATG 113
consensus_12002#0      CCTCATCTATTGCTACTAGTACATTACTGCATCTGTATGCTAAATTGCATTATTTAATTG 355
                           *  *              ** *    *                             

consensus_12002#1      GGGATATGGATCTGCTTGCTGAGTT------CTTGCTAGATCTGCCAACCAATTGTACCC 252
consensus_12002#3      ------------------------------------------------------------
consensus_12002#2      GAGTAGTAGCTTTTATTGAGGGATGAATTTGCTTGCTAGATCTGCCAACCAATTATACCC 173
consensus_12002#0      GGTCTTGCTGTCTACTTTTTAGCTTCATATTAATTCTAGCTCAGGCTTTGCTCCAGTACT 415
                                                                                   

consensus_12002#1      TACCCTAGTTCAACT----TTACTCTTGTTTACCTTGTTTCAGACGAACAATTGTGGCTA 308
consensus_12002#3      ------------------------------------------------------------
consensus_12002#2      TAGTTCAAGTTTACTCTTGTTTCTTCTTACTACCTTGTTTCAAACGAACAATTGTGGCTA 233
consensus_12002#0      ACTAGCGATTGTTTACCTCTTTTTTAAATGGGTTTTGTGATGATTTACAACTTGTAGCTA 475
                                                                                   

consensus_12002#1      ATTA----CTCCTACTTGTGCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA- 363
consensus_12002#3      ------------------------------------------------------------
consensus_12002#2      ATTAATCACTCCTACTTGGGCTTGCNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 293
consensus_12002#0      GGCTGGTGCTCTTTCATCTAGTAACTGCATCCTCGATAATATCATGGTTTAAAACTGCAC 535
                                                                                   

consensus_12002#1      ------------------------------------------------------------
consensus_12002#3      ------------------------------------------------------------
consensus_12002#2      AAAAAAAAAAA------------------------------------------------- 304
consensus_12002#0      GTTAAAACCAAGCTGACTAGGTATTCCTCCTCACATGACTTAAACCTGAGGTAATAAGGA 595
                                                                                   

consensus_12002#1      ------------------------------------------------------------
consensus_12002#3      ------------------------------------------------------------
consensus_12002#2      ------------------------------------------------------------
consensus_12002#0      TTTGTGCTCCACGTATTTTTGGTTGACCATTCACAATGCTTTGTTTAGGACCTATTCTTA 655
                                                                                   

consensus_12002#1      ------------------------------------------------------------
consensus_12002#3      ------------------------------------------------------------
consensus_12002#2      ------------------------------------------------------------
consensus_12002#0      GCTTAATCTGTGATGCAATAATTGTCTGCACTGTTTTGCCTTAGAATATAGTTGATCTAC 715
                                                                                   

consensus_12002#1      ------------------
consensus_12002#3      ------------------
consensus_12002#2      ------------------
consensus_12002#0      AAGCATCATGGTAACTGA 733