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Oryza sativa
cluster # 12011 cluster # 12011       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12011#0 length = 1389 sequences # 4  
consensus_12011#1 length = 575 sequences # 1  
consensus_12011#2 length = 401 sequences # 3  
consensus_12011#3 length = 295 sequences # 1  

consensusID : consensus_12011#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1389
fasta sequence
                              [CAAAAGCCTATTCTGCGGCGTTTGCAGCCGCCTCCACCAGTGAATGATACAAACCCTTATAATGTATTCAGACCAAGAGAGAAGGCACATCGACTTCATACAAGAAGGATGCAAAGGCGAGAAAATAATATTCAATCATTCGAAAAACTTCGCATGGTACGGCGCAACTTGGACCAGGCAAAGGCACTTATGGATGCTTTGGTTAAGAGGGAAGAGACAAAACGGGAGGCCATGGAATGCGAGGTCAACCTTCGACGCATTCAGATGAAATATAAGCATGAAGCCCAGCTTGTTGATGAAGGGACTGCACTGTCAGGCTTCCAGCAAGTTTCTAGTAGATTTGGATCGAGTGAAGATGATTACGCAGATTCAGATGACACGACAACTGAACAACCATATATCCGGCCACCTGTTTTCCGTCCTCGATTCGCTGATCATAAGCTATCCGTAATCCCTACATTGCGTATAAAGCGTGAGCGCGAACTAAAAAGGAGGCCACAGCAGAATGGCTGGGTGTTTAAAAGGGATCCTGAGGAGCCAGTATTGTTATTCACAAGACCATTGGATCCTGAGAAGTTGCTAGCAGCAGGTATAAAGCCACCACCAGATCCTCCCATTGAGAATGGTGCAACCATGCCACCATTTAGGTGCCGGGGTAGGATTGGGCGAGGTGGTCGCATCATCTTTGATCGATGGAACCCTCTTCTCCAAACACCAATTGGGCAGGAAACCTCCTATTATGTACCGTACAGCCGTAGGCCTCCCTCACCTGAAAGTTGAAGCAATTAGCCATCTGCACGTCCTACTTATGTGACCTATACAGCTAGTGAGAAGTGAAGCACTCGAGCAATTGATCCTGCTAAGGCGCCAAATTGGTCGATGGAATACTTTTTTGGCCGCCCGGGTTGTGAGCTGTACAGCAGGCTCAGACCCCCTCAGTGAATACTGGGTGTGGCCAGGCTATATCTGCTAACGTTTCTCTTCCGATCTGGGCTTAATCATCTTTTCACAGCTGTTGTAAAATTATTAATATGTAGGTGAAAGAGTAGAGCATTTTTTTGTCTAGGCTTGTAGGGTCAGTATCTAACACCGTGCTCTCTCATTGATTATTCATTTGGAGAAGGGGGAATCCTTCTCATTGATAAATCAACCTTTCTGTATAATGTTTCAACACTTGGTGCATTTGTGTTCAATCAATGTGCACGTATGTATATACTGTAATCCAATGACATGTGATATCAGATGTGACTAGGTTAGGTAGTGGTAGGGCACTAGGTGCGTGGAAATGGGATATGTGAAACAATGTTGCATGATGTTTTGTTGAAATGTTGTATTAGTTTATGTTGTTGTAACCTCAACAGTCCTTTTATTTTTTTCAATGAGTAGAAT]

[+] EMBL CB650636             [CAAAAGCCTATTCTGCGGCGTTTGCAGCCGCCTCCACCAGTGAATGATACAAACCCTTATAATGTATTCAGACCAAGAGAGAAGGCACATCGACTTCATACAAGAAGGATGCAAAGGCGAGAAAATAATATTCAATCATTCGAAAAACTTCGCATGGTACGGCGCAACTTGGACCAGGCAAAGGCACTTATGGATGCTTTGGTTAAGAGGGAAGAGACAAAACGGGAGGCCATGGAATGCGAGGTCAACCTTCGACGCATTCAGATGAAATATAAGCATGAAGCCCAGCTTGTTGATGAAGGGACTGCACTGTCAGGCTTCCAGCAAGTTTCTAGTAGATTTGGATCGAGTGAAGATGATTACGCAGATTCAGATGACACGACAACTGAACAACCATATATCCGGCCACCTGTTTTCCGTCCTCGATTCGCTGATCATAAGCTATCCGTAATCCCTACATTGCGTATAAAGCGTGAGCGCGAACTAAAAAGGAGGCCACAGCAGAATGGCTGGGTGTTTAAAAGGGATCCTGAGGAGCCAGTATTGTTATTCACAAGACCATTGGATCCTGAGAAGTTGCTAGCAGCAGGTATAAAGCCACCACCAGATCCTCCCATTGAGAATGGTGCAACCATGCCACCATTTAGGTGCCGGGGTAGGATTGGGCGAGGTGGTCGCATCATCTTTGATCGATGGAACCCTCTTCTCCAAACACCAATTGGGCAGGAAACCTCCTATTATGTACCGTACAGCCGTAGGCCTCCCTCACCTGAAAGTTGAAGCAATTAGCCATCTGCACGTCCTACTTATGTGACCTATACAGCTAGTGAGAAGTGAAGCACTCGAGCAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB666253             [                                                                                                                                                                                                                                                                                                                                                        ATCGAGTGAAGATGATTACGCAGATTCAGATGACACGACAACTGAACAACCATATATCCGGCCACCTGTTTTCCGTCCTCGATTCGCTGATCATAAGCTATCCGTAATCCCTACATTGCGTATAAAGCGTGAGCGCGAACTAAAAAGGAGGCCACAGCAGAATGGCTGGGTGTTTAAAAGGGATCCTGAGGAGCCAGTATTGTTATTCACAAGACCATTGGATCCTGAGAAGTTGCTAGCAGCAGGTATAAAGCCACCACCAGATCCTCCCATTGAGAATGGTGCAACCATGCCACCATTTAGGTGCCGGGGTAGGATTGGGCGAGGTGGTCGCATCATCTTTGATCGATGGAACCCTCTTCTCCAAACACCAATTGGGCAGGAAACCTCCTATTATGTACCGTACAGCCGTAGGCCTCCCTCACCTGAAAGTTGAAGCAATTAGCCATCTGCACGTCCTACTTATGTGACCTATACAGCTAGTGAGAAGTGAAGCACTCGAGCAATTGATCCTGCTAAGGCGCCAAATTGGTCGATGGAATACTTTTTTGGCCGCCCGGGTTGTGAGCTGTACAGCAGGCTCAGACCCCCTCAGTGAATACTGGGTGTGGCCAGGCTATATCTGCTAACGTTTCTCTTCCGATCTGGGCTTAATCATCTTTTCACAGCTGTTGTAAAATTATTAATATGTAGGTGAAAGAGTAGAGCATTTTTTTGTCTAGGCTTGTAGGGTCAGTATCTAACACCGTGCTCTCTCATTGATTATTCATTTGGAGAAGGGGGAATCCTTCTCATTGATAAATCAACCTTTGTGTATAATGTTTCAACACTTGGTGCATTTGTGT                                                                                                                                                                                                        ]
[-] EMBL CB636049             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCCACCACCAGATCCTCCCATTGAGAATGGTGCAACCATGCCACCATTTAGGTGCCGGGGTAGGATTGGGCGAGGTGGTCGCATCATCTTTGATCGATGGAACCCTCTTCTCCAAACACCAATTGGGCAGGAAACCTCCTATTATGTACCGTACAGCCGTAGGCCTCCCTCACCTGAAAGTTGAAGCAATTAGCCATCTGCACGTCCTACTTATGTGACCTATACAGCTAGTGAGAAGTGAAGCACTCGAGCAATTGATCCTGCTAAGGCGCCAAATTGGTCGATGGAATACTTTTTTGGCCGCCCGGGTTGTGAGCTGTACAGCAGGCTCAGACCCCCTCAGTGAATACTGGGTGTGGCCAGGCTATATCTGCTAACGTTTCTCTTCCGATCTGGGCTTAATCATCTTTTCACAGCTGTTGTAAAATTATTAATATGTAGGTGAAAGAGTAGAGCATTTTTTTGTCTAGGCTTGTAGGGTCAGTATCTAACACCGTGCTCTCTCATTGATTATTCATTTGGAGAAGGGGGAATCCTTCTCATTGATAAATCAACCTTTCTGTATAATGTTTCAACACTTGGTGCATTTG                                                                                                                                                                                                           ]
[-] EMBL CB636825             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCCATCTGCACGTCCTACTTATGTGACCTATACAGCTAGTGAGAAGTGAAGCACTCGAGCAATTGATCCTGCTAAGGCGCCAAATTGGTCGATGGAATACTTTTTTGGCCGCCCGGGTTGTGAGCTGTACAGCAGGCTCAGACCCCCTCAGTGAATACTGGGTGTGGCCAGGCTATATCTGCTAACGTTTCTCTTCCGATCTGGGCTTAATCATCTTTTCACAGCTGTTGTAAAATTATTAATATGTAGGTGAAAGAGTAGAGCATTTTTTTGTCTAGGCTTGTAGGGTCAGTATCTAACACCGTGCTCTCTCATTGATTATTCATTTGGAGAAGGGGGAATCCTTCTCATTGATAAATCAACCTTTCTGTATAATGTTTCAACACTTGGTGCATTTGTGTTCAATCAATGTGCACGTATGTATATACTGTAATCCAATGACATGTGATATCAGATGTGACTAGGTTAGGTAGTGGTAGGGCACTAGGTGCGTGGAAATGGGATATGTGAAACAATGTTGCATGATGTTTTGTTGAAATGTTGTATTAGTTTATGTTGTTGTAACCTCAACAGTCCTTTTATTTTTTTCAATGAGTAGAAT]


>consensus_12011#0 CAAAAGCCTATTCTGCGGCGTTTGCAGCCGCCTCCACCAGTGAATGATACAAACCCTTAT AATGTATTCAGACCAAGAGAGAAGGCACATCGACTTCATACAAGAAGGATGCAAAGGCGA GAAAATAATATTCAATCATTCGAAAAACTTCGCATGGTACGGCGCAACTTGGACCAGGCA AAGGCACTTATGGATGCTTTGGTTAAGAGGGAAGAGACAAAACGGGAGGCCATGGAATGC GAGGTCAACCTTCGACGCATTCAGATGAAATATAAGCATGAAGCCCAGCTTGTTGATGAA GGGACTGCACTGTCAGGCTTCCAGCAAGTTTCTAGTAGATTTGGATCGAGTGAAGATGAT TACGCAGATTCAGATGACACGACAACTGAACAACCATATATCCGGCCACCTGTTTTCCGT CCTCGATTCGCTGATCATAAGCTATCCGTAATCCCTACATTGCGTATAAAGCGTGAGCGC GAACTAAAAAGGAGGCCACAGCAGAATGGCTGGGTGTTTAAAAGGGATCCTGAGGAGCCA GTATTGTTATTCACAAGACCATTGGATCCTGAGAAGTTGCTAGCAGCAGGTATAAAGCCA CCACCAGATCCTCCCATTGAGAATGGTGCAACCATGCCACCATTTAGGTGCCGGGGTAGG ATTGGGCGAGGTGGTCGCATCATCTTTGATCGATGGAACCCTCTTCTCCAAACACCAATT GGGCAGGAAACCTCCTATTATGTACCGTACAGCCGTAGGCCTCCCTCACCTGAAAGTTGA AGCAATTAGCCATCTGCACGTCCTACTTATGTGACCTATACAGCTAGTGAGAAGTGAAGC ACTCGAGCAATTGATCCTGCTAAGGCGCCAAATTGGTCGATGGAATACTTTTTTGGCCGC CCGGGTTGTGAGCTGTACAGCAGGCTCAGACCCCCTCAGTGAATACTGGGTGTGGCCAGG CTATATCTGCTAACGTTTCTCTTCCGATCTGGGCTTAATCATCTTTTCACAGCTGTTGTA AAATTATTAATATGTAGGTGAAAGAGTAGAGCATTTTTTTGTCTAGGCTTGTAGGGTCAG TATCTAACACCGTGCTCTCTCATTGATTATTCATTTGGAGAAGGGGGAATCCTTCTCATT GATAAATCAACCTTTCTGTATAATGTTTCAACACTTGGTGCATTTGTGTTCAATCAATGT GCACGTATGTATATACTGTAATCCAATGACATGTGATATCAGATGTGACTAGGTTAGGTA GTGGTAGGGCACTAGGTGCGTGGAAATGGGATATGTGAAACAATGTTGCATGATGTTTTG TTGAAATGTTGTATTAGTTTATGTTGTTGTAACCTCAACAGTCCTTTTATTTTTTTCAAT GAGTAGAAT



consensusID : consensus_12011#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence
                              [ACCCATCTGCACGTCCTACTTATGTGACCTATACAGCTAGTGAGAAGTGAACACTCGAGCAATTGANCCTGCTAAGGCNCCAAATTGGTCGATGGAATACTTTTTTGGCCNCCCGGGTTGTGAGCTGTACAGCAGGCTCAGACCCCCTCAGTGAATACTGGGTGTGGCCAGGCTATATCTGCTAACGTTTCTCTTCCGATCTGGGCTTAATCATCTTTTCACAGCTGTTGTAAAATTATTAATATGTAGGTGAAAGAGTAGAGCATTTTTTTGTCTAGGCTTGTAGGGTCAGTATCTAACACCGTGCTCTCTCATTGATTATTCATTTGGAGAAGGGGGAATCCTTCTCATTGATAAATCAACCTTTCTGTATAATGTTTCAACACTTGGTGCATTTGTGTTCAATCAATGTGCACGTATGTATATACTGTAATCCAATGACATGTGATATCAGATGTGACTAGGTTAGGTAGTGGTAGGGCACTAGGTGCGTGGAAATGGGATATGTGAAACAATGTTGCATGATGTTTTGTTGAAATGTTGTATTAGTTTAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU058096             [ACCCATCTGCACGTCCTACTTATGTGACCTATACAGCTAGTGAGAAGTGAACACTCGAGCAATTGANCCTGCTAAGGCNCCAAATTGGTCGATGGAATACTTTTTTGGCCNCCCGGGTTGTGAGCTGTACAGCAGGCTCAGACCCCCTCAGTGAATACTGGGTGTGGCCAGGCTATATCTGCTAACGTTTCTCTTCCGATCTGGGCTTAATCATCTTTTCACAGCTGTTGTAAAATTATTAATATGTAGGTGAAAGAGTAGAGCATTTTTTTGTCTAGGCTTGTAGGGTCAGTATCTAACACCGTGCTCTCTCATTGATTATTCATTTGGAGAAGGGGGAATCCTTCTCATTGATAAATCAACCTTTCTGTATAATGTTTCAACACTTGGTGCATTTGTGTTCAATCAATGTGCACGTATGTATATACTGTAATCCAATGACATGTGATATCAGATGTGACTAGGTTAGGTAGTGGTAGGGCACTAGGTGCGTGGAAATGGGATATGTGAAACAATGTTGCATGATGTTTTGTTGAAATGTTGTATTAGTTTAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12011#1 ACCCATCTGCACGTCCTACTTATGTGACCTATACAGCTAGTGAGAAGTGAACACTCGAGC AATTGANCCTGCTAAGGCNCCAAATTGGTCGATGGAATACTTTTTTGGCCNCCCGGGTTG TGAGCTGTACAGCAGGCTCAGACCCCCTCAGTGAATACTGGGTGTGGCCAGGCTATATCT GCTAACGTTTCTCTTCCGATCTGGGCTTAATCATCTTTTCACAGCTGTTGTAAAATTATT AATATGTAGGTGAAAGAGTAGAGCATTTTTTTGTCTAGGCTTGTAGGGTCAGTATCTAAC ACCGTGCTCTCTCATTGATTATTCATTTGGAGAAGGGGGAATCCTTCTCATTGATAAATC AACCTTTCTGTATAATGTTTCAACACTTGGTGCATTTGTGTTCAATCAATGTGCACGTAT GTATATACTGTAATCCAATGACATGTGATATCAGATGTGACTAGGTTAGGTAGTGGTAGG GCACTAGGTGCGTGGAAATGGGATATGTGAAACAATGTTGCATGATGTTTTGTTGAAATG TTGTATTAGTTTAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12011#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 401
fasta sequence
                              [GCAGTCTGATTAAAATGTATATGCTAATTCACTCAGTTGGTGCATAAAAACATCCATACAGTTGTACCAAACTACAACATTTGTTGAAGCAGTCTGATTAAAACGAAGGATGCACCAAACTGACAATGAATAGTTGGGTTTGTAAGCCATCAGCCATAGAATATAAGTTTTTGTCAGGTTGGTTTTGTCCAAGTTATGCTCAAGTCTGGAGGACTGGAGGAACTGTTACTCTGTTATTTCATGATTCTTGTTTCTCGGTTGCATTACTGTTGACTATTGCTTTTGTTTTCGTGAAGCCGCCTCCACCAGTGAATGATACAAACCCTTATAATGTATTCAGACCAAGAGAGAAGGCACATCGACTTCATACAAGAAGGATGCAAAGGCGAGAAAATAATATT]

[+] EMBL CF322853             [GCAGTCTGATTAAAATGTATATGCTAATTCACTCAGTTGGTGCATAAAAACATCCATACAGTTGTACCAAACTACAACATTTGTTGAAGCAGTCTGATTAAAACGAAGGATGCACCAAACTGACAATGAATAGTTGGGTTTGTAAGCCATCAGCCATAGAATATAAGTTTTTGTCAGGTTGGTTTTGTCCAAGTTATGCTCAAGTCTGGAGGACTGGAGGAACTGTTACTCTGTTATTTCATGATTCTTGTTTCTCGGTTGCATTACTGTTGACTATTGCTTTTGTTTTCGTGAAGCCGCCTCCACCAGTGAATGATACAAACCCTTATAATGTATTCAGACCAAGAGAGAAGGCACATCGACTTCATACAAGAAGGATGCAAAGGCGAGAAAATAATATT]
[+] EMBL CF322899             [GCAGTCTGATTAAAATGTATATGCTAATTCACTCAGTTGGTGCATAAAAACATCCATACAGTTGTACCAAACTACAACATTTGTTGAAGCAGTCTGATTAAAACGAAGGATGCACCAAACTGACAATGAATAGTTGGGTTTGTAAGCCATCAGCCATAGAATATAAGTTTTTGTCAGGTTGGTTTTGTCCAAGTTATGCTCAAGTCTGGAGGACTGGAGGAACTGTTACTCTGTTATTTCATGATTCTTGGTTCTCGGTTGCATTACTGTTG                                                                                                                                 ]
[+] EMBL CF322613             [GCAGTCTGATTAAAATGTATATGCTAATTCACTCAGTTGGTGCATAAAAACATCCATACAGTTGTACCAAACTACAACATTTGTTGAAGCAGTCTGATTAAAACGAAGGATGCACCAAACTGACAATGAATAGTTGGGTTTGTAAGCCATCAGCCATAGAATATAAGTTTTTGTCAG                                                                                                                                                                                                                                ]


>consensus_12011#2 GCAGTCTGATTAAAATGTATATGCTAATTCACTCAGTTGGTGCATAAAAACATCCATACA GTTGTACCAAACTACAACATTTGTTGAAGCAGTCTGATTAAAACGAAGGATGCACCAAAC TGACAATGAATAGTTGGGTTTGTAAGCCATCAGCCATAGAATATAAGTTTTTGTCAGGTT GGTTTTGTCCAAGTTATGCTCAAGTCTGGAGGACTGGAGGAACTGTTACTCTGTTATTTC ATGATTCTTGTTTCTCGGTTGCATTACTGTTGACTATTGCTTTTGTTTTCGTGAAGCCGC CTCCACCAGTGAATGATACAAACCCTTATAATGTATTCAGACCAAGAGAGAAGGCACATC GACTTCATACAAGAAGGATGCAAAGGCGAGAAAATAATATT



consensusID : consensus_12011#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence
                              [TAAATCTGGTAGGAGGTCAAAATAGACAATCAGCTTTCCATGCAAATCCACCAACAAGGGCACAGGCATGATCTCCTTCTGTNCACTCCNNNTNCNNGNTTATTNNNACNGTAATCCNACGACNNGTNATANNAGATGTGACTAGGTTAGGTAATGGTANGGCNCNAGGTGCNTGGAAATGGGATATGTGAAACAATGTTGCATGATGTTTTGTTGAAATGTTGTATTAGTTTATGTTGTTGTAACCTCAACAGTCCTTTTATTTCTTCAATGAGTAGATTTTTTTTGTGAAATT]

[+] EMBL AA754506             [TAAATCTGGTAGGAGGTCAAAATAGACAATCAGCTTTCCATGCAAATCCACCAACAAGGGCACAGGCATGATCTCCTTCTGTNCACTCCNNNTNCNNGNTTATTNNNACNGTAATCCNACGACNNGTNATANNAGATGTGACTAGGTTAGGTAATGGTANGGCNCNAGGTGCNTGGAAATGGGATATGTGAAACAATGTTGCATGATGTTTTGTTGAAATGTTGTATTAGTTTATGTTGTTGTAACCTCAACAGTCCTTTTATTTCTTCAATGAGTAGATTTTTTTTGTGAAATT]


>consensus_12011#3 TAAATCTGGTAGGAGGTCAAAATAGACAATCAGCTTTCCATGCAAATCCACCAACAAGGG CACAGGCATGATCTCCTTCTGTNCACTCCNNNTNCNNGNTTATTNNNACNGTAATCCNAC GACNNGTNATANNAGATGTGACTAGGTTAGGTAATGGTANGGCNCNAGGTGCNTGGAAAT GGGATATGTGAAACAATGTTGCATGATGTTTTGTTGAAATGTTGTATTAGTTTATGTTGT TGTAACCTCAACAGTCCTTTTATTTCTTCAATGAGTAGATTTTTTTTGTGAAATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12011#0      CAAAAGCCTATTCTGCGGCGTTTGCAGCCGCCTCCACCAGTGAATGATACAAACCCTTAT 60
consensus_12011#1      ------------------------------------------------------------
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      AATGTATTCAGACCAAGAGAGAAGGCACATCGACTTCATACAAGAAGGATGCAAAGGCGA 120
consensus_12011#1      ------------------------------------------------------------
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      GAAAATAATATTCAATCATTCGAAAAACTTCGCATGGTACGGCGCAACTTGGACCAGGCA 180
consensus_12011#1      ------------------------------------------------------------
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      AAGGCACTTATGGATGCTTTGGTTAAGAGGGAAGAGACAAAACGGGAGGCCATGGAATGC 240
consensus_12011#1      ------------------------------------------------------------
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      GAGGTCAACCTTCGACGCATTCAGATGAAATATAAGCATGAAGCCCAGCTTGTTGATGAA 300
consensus_12011#1      ------------------------------------------------------------
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      GGGACTGCACTGTCAGGCTTCCAGCAAGTTTCTAGTAGATTTGGATCGAGTGAAGATGAT 360
consensus_12011#1      ------------------------------------------------------------
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      TACGCAGATTCAGATGACACGACAACTGAACAACCATATATCCGGCCACCTGTTTTCCGT 420
consensus_12011#1      ------------------------------------------------------------
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      CCTCGATTCGCTGATCATAAGCTATCCGTAATCCCTACATTGCGTATAAAGCGTGAGCGC 480
consensus_12011#1      ------------------------------------------------------------
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      GAACTAAAAAGGAGGCCACAGCAGAATGGCTGGGTGTTTAAAAGGGATCCTGAGGAGCCA 540
consensus_12011#1      ------------------------------------------------------------
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      GTATTGTTATTCACAAGACCATTGGATCCTGAGAAGTTGCTAGCAGCAGGTATAAAGCCA 600
consensus_12011#1      ------------------------------------------------------------
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      CCACCAGATCCTCCCATTGAGAATGGTGCAACCATGCCACCATTTAGGTGCCGGGGTAGG 660
consensus_12011#1      ------------------------------------------------------------
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      ATTGGGCGAGGTGGTCGCATCATCTTTGATCGATGGAACCCTCTTCTCCAAACACCAATT 720
consensus_12011#1      ------------------------------------------------------------
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      GGGCAGGAAACCTCCTATTATGTACCGTACAGCCGTAGGCCTCCCTCACCTGAAAGTTGA 780
consensus_12011#1      ------------------------------------------------------------
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      AGCAATTAGCCATCTGCACGTCCTACTTATGTGACCTATACAGCTAGTGAGAAGTGAAGC 840
consensus_12011#1      -------ACCCATCTGCACGTCCTACTTATGTGACCTATACAGCTAGTGAGAAGTGAA-C 52
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      ACTCGAGCAATTGATCCTGCTAAGGCGCCAAATTGGTCGATGGAATACTTTTTTGGCCGC 900
consensus_12011#1      ACTCGAGCAATTGANCCTGCTAAGGCNCCAAATTGGTCGATGGAATACTTTTTTGGCCNC 112
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      CCGGGTTGTGAGCTGTACAGCAGGCTCAGACCCCCTCAGTGAATACTGGGTGTGGCCAGG 960
consensus_12011#1      CCGGGTTGTGAGCTGTACAGCAGGCTCAGACCCCCTCAGTGAATACTGGGTGTGGCCAGG 172
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      ------------------------------------------------------------
                                                                                   

consensus_12011#0      CTATATCTGCTAACGTTTCTCTTCCGATCTGGGCTTAATCATCTTTTCACAGCTGTTGTA 1020
consensus_12011#1      CTATATCTGCTAACGTTTCTCTTCCGATCTGGGCTTAATCATCTTTTCACAGCTGTTGTA 232
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      -------------------------------------GCAGTCTGATTAAAATGTATATG 23
                                                                                   

consensus_12011#0      AAATTATTAATATGTAGGTGAAAGAGTAGAGCATTTTTTTGTCTAGGCTTGTAGGGTCAG 1080
consensus_12011#1      AAATTATTAATATGTAGGTGAAAGAGTAGAGCATTTTTTTGTCTAGGCTTGTAGGGTCAG 292
consensus_12011#3      ------------------------------------------------------------
consensus_12011#2      CTAATTCACTCAGTTGGTGCATAAAAACATCCATACAGTTGTACCAAACTACAACATTTG 83
                                                                                   

consensus_12011#0      TATCTAACACCGTGCTCTCTCATTGATTATTCATTTGGAGAAGGGGGAATCCTTCTCATT 1140
consensus_12011#1      TATCTAACACCGTGCTCTCTCATTGATTATTCATTTGGAGAAGGGGGAATCCTTCTCATT 352
consensus_12011#3      ------------------TAAATCTGGTAGGAGGTCAAAATAGACAATCAGCTTTCCAT- 41
consensus_12011#2      T---TGAAGCAGTCTGATTAAAACGAAGGATGCACCAAACTGACAATGAATAGTTGGGTT 140
                                            *                *              *    * 

consensus_12011#0      GATAA---ATCAACCTTTCTGTATAATGTTTCAACACTTGGTGCATTTGTGTTCAATCAA 1197
consensus_12011#1      GATAA---ATCAACCTTTCTGTATAATGTTTCAACACTTGGTGCATTTGTGTTCAATCAA 409
consensus_12011#3      -GCAA---ATCCACCA------ACAAGGGCACAG-GCATGATCTCCTTCTGTNCACTCCN 90
consensus_12011#2      TGTAAGCCATCAGCCATAGAATATAAGTTTTTG----TCAGGTTGGTTTTGTCCAAGTTA 196
                          **   ***  **       * **                    ** *** **     

consensus_12011#0      TGTGCACGTATGTATATACTGTAATCCAATGACATGTGATATCAGATGTGACTAGGTTAG 1257
consensus_12011#1      TGTGCACGTATGTATATACTGTAATCCAATGACATGTGATATCAGATGTGACTAGGTTAG 469
consensus_12011#3      NNTNCNNGNTTATTNNNACNGTAATCCNACGACNNGTNATANNAGATGTGACTAGGTTAG 150
consensus_12011#2      TGCTCAAGTCTGGAGGACTGGAGGAACTGTTACTC-TGTTATTTCATGATTCTTG-TTTC 254
                           *  *  *         *     *    **   *  **    ***   ** * **  

consensus_12011#0      GTAGTGGTAGGGCACTAGGTGCGTGGAAATGGGATATGTGAAACAATGTTGCATGATGTT 1317
consensus_12011#1      GTAGTGGTAGGGCACTAGGTGCGTGGAAATGGGATATGTGAAACAATGTTGCATGATGTT 529
consensus_12011#3      GTAATGGTANGGCNCNAGGTGCNTGGAAATGGGATATGTGAAACAATGTTGCATGATGTT 210
consensus_12011#2      TCGGTTGCATTACTGTTGAC-TATTGCTTTTGTTTTCGTGAAGCCGCCTCCACCAGTGAA 313
                           * * *   *    *     * *   * *  *  ***** *    *       **  

consensus_12011#0      TTGTTGAAATGTTGTATTAGTTTATGTTGTTGTAACCTCAACAGTCCTTTTATTTTTTTC 1377
consensus_12011#1      TTGTTGAAATGTTGTATTAGTTTAAAAAAAAAAAAAAAAAAAAAAA-------------- 575
consensus_12011#3      TTGTTGAAATGTTGTATTAGTTTATGTTGTTGTAACCTCAACAGTCCTTTTATTTCTT-C 269
consensus_12011#2      TGATACAAACCCT-TAT-AATGTATTCAGAC-CAAGAGAGAAGGCACATCGACTTCATAC 370
                       *  *  ***   * *** * * **         **     *                   

consensus_12011#0      AATGAGTAGAAT------------------- 1389
consensus_12011#1      -------------------------------
consensus_12011#3      AATGAGTAGATTTTTTTTGTGAAATT----- 295
consensus_12011#2      AAGAAGGATGCAAAGGCGAGAAAATAATATT 401
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)