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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12014#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2464 fasta sequence
[AGTGGGAGGCATACGTCCTCGCCAACAAGCTCTTCTCCCAGCGCGTCATCGAGGTCCTCAACCCCGAGGATGACTACATCTGGATCCACGATTACCACCTCCTCGCCCTCCCGTCCTTCCTTCGCCGTCGGTTCAACAGGCTCCGCATCGGTTTCTTCCTGCACAGCCCGTTCCCTTCGTCGGAACTCTACCGTTCCCTCCCTGTTCGCGACGAGATCCTCAAATCACTGCTAAACTGCGATCTGATTGGGTTCCACACCTTTGATTACGCGCGGCATTTCCTGTCCTGCTGCAGCCGGATGCTGGGGATCGAGTACCAGTCGAAGAGGGGATATATCGGTCTCGATTACTTTGGCCGCACTGTTGGGATAAAGATCATGCCTGTTGGGATTAACATGACGCAGCTGCAGACGCAGATCCGGCTGCCTGATCTTGAGTGGCGTGTCGCCGAACTCCGGAAGCAGTTTGATGGGAAGACTGTCATGCTCGGTGTGGATGATATGGACATATTTAAGGGGATTAATCTGAAAGTTCTTGCG-TTTGAGCAGATGCTGAGGACACACCCAAAATGGCAGCGCAAGGCAGTGTTGGTGCAGATTGCAAACCCAAGGGGTGGTGGTGGGAAGGACCTTGAAGAGATACAGGCTGAGATTGATGAGAGTTGCAGGAGGATAAATGCACAATTTTCACGGCCAGGATATGTTCCTGTGGTGATTATCAATAGAGCCCTTTCAAGTGTGGAGAGGATGGCTTATTATACCGTGGCAGAGTGTGTCGTTGTAACTGCAGTGAGGGATGGGATGAACCTCACACCATATGAGTATATTGTCTGTAGACAGGGATTTCCAGATTTGGATGGTTCTGGGGATGATGGGCCAAGGAGAAAGAGTATGTTAGTTGTGTCCGAATTCATTGGTTGCTCACCATCACTTAGTGGAGCAATTCGGGTAAACCCTTGGAACATTGATACAACAGCAGAGGCAATGAACGAGTCGATTGCTTTATCAGAGAACGAGAAGCAACTGCGGCATGAGAAGCATTACAGATATGTCAGCTCACATGATGTTGCCTATTGGTCCAAGAGCTATATTCATGATTTGGAGAGAAGCTGCAGGGACCATTTTAGGAGGAGGTGCTGGGGTATTGGACTAGGATTTGGATTTAGAGTAGTTGCTCTTGACCGCAACTTCAAAAAGCTTACTGTGGATTCTATCGTTACTGATTACAAGAATTCTAAGAGCAGGGTTATACTGCTAGACTACGATGGAACGCTAGTACCACAAACTACAATCAACAGGACTCCAAATGAAAGTGTTGTTAAAATCATGAATGCTCTTTGTGACGATAAGAAGAATGTTGTTTTTATTGTTAGTGGACGAGGAAGGGATAGCCTTGAGAAATGGTTTTCCCCTTGCCAGGATCTTGGCATTGCTGCCGAACATGGCTACTTTATGAG-GTGGACCAGAGATGAGCAATGGCAATTGAATAACCAGTGCTCAGAATTTGGATGGATGCAGATGGCCAAGCCAGTTATGAACCTGTATACAGAAGCAACCGATGGATCATATATTGAAACCAAAGAGAGTGCTTTGGTCTGGCACCACCAAGATGCTGACCCTGGTTTTGGATCTTCACAAGCTAAAGAGATGCTAGATCATTTGGAAAGTGTTCTTGCTAATGAGCCTGTCTGTGTAAAGAGTGGCCAACAGATTGTGGAAGTGAAACCGCAGGGTGTCAGCAAAGGATTTGTTGCTGAGAAGATCCTATCAACGCTGACAGAGAACAAGAGACAGGCAGATTTTGTTCTCTGCATAGGCGATGATAGATCAGACGAGGATATGTTTGAAGGAATTGCTGATATCATGAGAAGGAGCATAGTTGATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGAAGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGGCGCTTGCAGATGCATCAGAGGAGACTGATTCACAGGAAGATGCAGAAGAGATAACATCTATCCCGGACCCGGAATAGGCGTGATGATGTTTTAAATCTCCTGGTGATGTCAATGCGTCAATTGCCACCAGCAGTCTTCCTGACTAAAATTGAAGCTGATTGCCATCAGCAGGAAGTGCAACTTTAGTAATACTCAGTTAGACAAATCAATGTCAATAATCTTAGCGCTGCTCGATTTTCTGCCATTTTTCTGATTTCTCTTATGATAGTTTTGGAGTAATTCTCATAATATTGGTAGATAGAAAGGAGCCTGGGGGGAAAGAATCCATGGCGTAGTACATCATTTTTCTTTTACCTTGCTTGTTAGGTACAGTATGGAAGATTGGAGTATTTGCGGGAGTACAAGTCGGAAATTTGGTGAGCAATTTTGTATTAGATCCTTTTAAGTTTAAAGCGATAAAACACTATTGCCATTTAAACTAGAG]
[+] EMBL AK101207 [AGTGGGAGGCATACGTCCTCGCCAACAAGCTCTTCTCCCAGCGCGTCATCGAGGTCCTCAACCCCGAGGATGACTACATCTGGATCCACGATTACCACCTCCTCGCCCTCCCGTCCTTCCTTCGCCGTCGGTTCAACAGGCTCCGCATCGGTTTCTTCCTGCACAGCCCGTTCCCTTCGTCGGAACTCTACCGTTCCCTCCCTGTTCGCGACGAGATCCTCAAATCACTGCTAAACTGCGATCTGATTGGGTTCCACACCTTTGATTACGCGCGGCATTTCCTGTCCTGCTGCAGCCGGATGCTGGGGATCGAGTACCAGTCGAAGAGGGGATATATCGGTCTCGATTACTTTGGCCGCACTGTTGGGATAAAGATCATGCCTGTTGGGATTAACATGACGCAGCTGCAGACGCAGATCCGGCTGCCTGATCTTGAGTGGCGTGTCGCCGAACTCCGGAAGCAGTTTGATGGGAAGACTGTCATGCTCGGTGTGGATGATATGGACATATTTAAGGGGATTAATCTGAAAGTTCTTGCG TTTGAGCAGATGCTGAGGACACACCCAAAATGGCAGCGCAAGGCAGTGTTGGTGCAGATTGCAAACCCAAGGGGTGGTGGTGGGAAGGACCTTGAAGAGATACAGGCTGAGATTGATGAGAGTTGCAGGAGGATAAATGCACAATTTTCACGGCCAGGATATGTTCCTGTGGTGATTATCAATAGAGCCCTTTCAAGTGTGGGGAGGATGGCTTATTATACCGTGGCAGAGTGTGTCGTTGTAACTGCAGTGAGGGATGGGATGAACCTCACACCATATGAGTATATTGTCTGTAGACAGGGATTTCCAGATTTGGATGGTTCTGGGGATGATGGGCCAAGGAGAAAGAGTATGTTAGTTGTGTCCGAATTCATTGGTTGCTCACCATCACTTAGTGGAGCAATTCGGGTAAACCCTTGGAACATTGATACAACAGCAGAGGCAATGAACGAGTCGATTGCTTTATCAGAGAACGAGAAGCAACTGCGGCATGAGAAGCATTACAGATATGTCAGCTCACATGATGTTGCCTATTGGTCCAAGAGCTATATTCATGATTTGGAGAGAAGCTGCAGGGACCATTTTAGGAGGAGGTGCTGGGGTATTGGACTAGGATTTGGATTTAGAGTAGTTGCTCTTGACCGCAACTTCAAAAAGCTTACTGTGGATTCTATCGTTACTGATTACAAGAATTCTAAGAGCAGGGTTATACTGCTAGACTACGATGGAACGCTAGTACCACAAACTACAATCAACAGGACTCCAAATGAAAGTGTTGTTAAAATCATGAATGCTCTTTGTGACGATAAGAAGAATGTTGTTTTTATTGTTAGTGGACGAGGAAGGGATAGCCTTGAGAAATGGTTTTCCCCTTGCCAGGATCTTGGCATTGCTGCCGAACATGGCTACTTTATGAG GTGGACCAGAGATGAGCAATGGCAATTGAATAACCAGTGCTCAGAATTTGGATGGATGCAGATGGCCAAGCCAGTTATGAACCTGTATACAGAAGCAACCGATGGATCATATATTGAAACCAAAGAGAGTGCTTTGGTCTGGCACCACCAAGATGCTGACCCTGGTTTTGGATCTTCACAAGCTAAAGAGATGCTAGATCATTTGGAAAGTGTTCTTGCTAATGAGCCTGTCTGTGTAAAGAGTGGCCAACAGATTGTGGAAGTGAAACCGCAGGGTGTCAGCAAAGGATTTGTTGCTGAGAAGATCCTATCAACGCTGACAGAGAACAAGAGACAGGCAGATTTTGTTCTCTGCATAGGCGATGATAGATCAGACGAGGATATGTTTGAAGGAATTGCTGATATCATGAGAAGGAGCATAGTTGATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGAAGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGGCGCTTGCAGATGCATCAGAGGAGACTGATTCACAGGAAGATGCAGAAGAGATAACATCTATCCCGGACCCGGAATAGGCGTGATGATGTTTTAAATCTCCTGGTGATGTCAATGCGTCAATTGCCACCAGCAGTCTTCCTGACTAAAATTGAAGCTGATTGCCATCAGCAGGAAGTGCAACTTTAGTAATACTCAGTTAGACAAATCAATGTCAATAATCTTAGCGCTGCTCGATTTTCTGCCATTTTTCTGATTTCTCTTATGATAGTTTTGGAGTAATTCTCATAATATTGGTAGATAGAAAGGAGCCTGGGGGGAAAGAATCCATGGCGTAGTACATCATTTTTCTTTTACCTTGCTTGTTAGGTACAGTATGGAAGATTGGAGTATTTGCGGGAGTACAAGTCGG ]
[+] EMBL AK109542 [AGTGGGAGGCATACGTCCTCGCCAACAAGCTCTTCTCCCAGCGCGTCATCGAGGTCCTCAACCCCGAGGATGACTACATCTGGATCCACGATTACCACCTCCTCGCCCTCCCGTCCTTCCTTCGCCGTCGGTTCAACAGGCTCCGCATCGGTTTCTTCCTGCACAGCCCGTTCCCTTCGTCGGAACTCTACCGTTCCCTCCCTGTTCGCGACGAGATCCTCAAATCACTGCTAAACTGCGATCTGATTGGGTTCCACACCTTTGATTACGCGCGGCATTTCCTGTCCTGCTGCAGCCGGATGCTGGGGATCGAGTACCAGTCGAAGAGGGGATATATCGGTCTCGATTACTTTGGCCGCACTGTTGGGATAAAGATCATGCCTGTTGGGATTAACATGACGCAGCTGCAGACGCAGATCCGGCTGCCTGATCTTGAGTGGCGTGTCGCCGAACTCCGGAAGCAGTTTGATGGGAAGACTGTCATGCTCGGTGTGGATGATATGGACATATTTAAGGGGATTAATCTGAAAGTTCTTGCG TTTGAGCAGATGCTGAGGACACACCCAAAATGGCAGCGCAAGGCAGTGTTGGTGCAGATTGCAAACCCAAGGGGTGGTGGTGGGAAGGACCTTGAAGAGATACAGGCTGAGATTGATGAGAGTTGCAGGAGGATAAATGCACAATTTTCACGGCCAGGATATGTTCCTGTGGTGATTATCAATAGAGCCCTTTCAAGTGTGGAGAGGATGGCTTATTATACCGTGGCAGAGTGTGTCGTTGTAACTGCAGTGAGGGATGGGATGAACCTCACACCATATGAGTATATTGTCTGTAGACAGGGATTTCCAGATTTGGAT ]
[+] EMBL AK105417 [ GCTCTTCTCCCAGCGCGTCATCGAGGTCCTCAACCCCGAGGATGACTACATCTGGATCCACGATTACCACCTCCTCGCCCTCCCGTCCTTCCTTCGCCGTCGGTTCAACAGGCTCCGCATCGGTTTCTTCCTGCACAGCCCGTTCCCTTCGTCGGAACTCTACCGTTCCCTCCCTGTTCGCGACGAGATCCTCAAATCACTGCTAAACTGCGATCTGATTGGGTTCCACACCTTTGATTACGCGCGGCATTTCCTGTCCTGCTGCAGCCGGATGCTGGGGATCGAGTACCAGTCGAAGAGGGGATATATCGGTCTCGATTACTTTGGCCGCACTGTTGGGATAAAGATCATGCCTGTTGGGATTAACATGACGCAGCTGCAGACGCAGATCCGGCTGCCTGATCTTGAGTGGCGTGTCGCCGAACTCCGGAAGCAGTTTGATGGGAAGACTGTCATGCTCGGTGTGGATGATATGGACATATTTAAGGGGATTAATCTGAAAGTTCTTGCG TTTGAGCAGATGCTGAGGACACACCCAAAATGGCAGCGCAAGGCAGTGTTGGTGCAGATTGCAAACCCAAGGGGTGGTGGTGGGAAGGACCTTGAAAAGATACAGGCTGAGATTGATGAGAGTTGCAGGAGGATAAATGCACAATTTTCACGGCCAGGATATGTTCCTGTGGTGATTATCAATAGAGCCCTTTCAAGTGTGGAGAGGATGGCTTATTATACCGTGGCAGAGTGTGTCGTTGTAACTGCAGTGAGGGATGGGATGAACCTCACACCATATGAGTATATTGTCTGTAGACAGGGATTTCCAGATTTGGATGGTTCTGGGGATGATGGGCCAAGGAGAAAGAGTATGTTAGTTGTGTCCGAATTCATTGGTTGCTCACCATCACTTAGTGGAGCAATTCGGGTAAACCCTTGGAACATTGATACAACAGCAGAGGCAATGAACGAGTCGATTGCTTTATCAGAGAACGAGAAGCAACTGCGGCATGAGAAGCATTACAGATATGTCAGCTCACATGATGTTGCCTATTGGTCCAAGAGCTATATTCATGATTTGGAGAGAAGCTGCAGGGACCATTTTAGGAGGAGGTGCTGGGGTATTGGACTAGGATTTGGATTTAGAGTAGTTGCTCTTGACCGCAACTTCAAAAAGCTTACTGTGGATTCTATCGTTACTGATTACAAGAATTCTAAGAGCAGGGTTATACTGCTAGACTACGATGGAACGCTAGTACCACAAACTACAATCAACAGGACTCCAAATGAAAGTGTTGTTAAAATCATGAATGCTCTTTGTGACGATAAGAAGAATGTTGTTTTTATTGTTAGTGGACGAGGAAGGGATAGCCTTGAGAAATGGTTTTCCCCTTGCCAGGATCTTGGCATTGCTGCCGAACATGGCTACTTTATGAG GTGGACCAGAGATGAGCAATGGCAATTGAATAACCAGTGCTCAGAATTTGGATGGATGCAGATGGCCAAGCCAGTTATGAACCTGTATACAGAAGCAACCGATGGATCATATATTGAAACCAAAGAGAGTGCTTTGGTCTGGCACCACCAAGATGCTGACCCTGGTTTTGGATCTTCACAAGCTAAAGAGATGCTAGATCATTTGGAAAGTGTTCTTGCTAATGAGCCTGTCTGTGTAAAGAGTGGCCAACAGATTGTGGAAGTGAAACCGCAGGGTGTCAGCAAAGGATTTGTTGCTGAGAAGATCCTATCAACGCTGACAGAGAACAAGAGACAGGCAGATTTTGTTCTCTGCATAGGCGATGATAGATCAGACGAGGATATGTTTGAAGGAATTGCTGATATCATGAGAAGGAGCATAGTTGATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGAAGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGGCGCTTGCAGATGCATCAGAGGAGACTGATTCACAGGAAGATGCAGAAGAGATAACATCTATCCCGGACCCGGAATAGGCGTGATGATGTTTTAAATCTCCTGGTGATGTCAATGCGTCAATTGCCACCAGCAGTCTTCCTGACTAAAATTGAAGCTGATTGCCATCAGCAGGAAGTGCAACTTTAGTAATACTCAGTTAGACAAATCAATGTCAATAATCTTAGCGCTGCTCGATTTTCTGCCATTTTTCTGATTTCTCTTATGATAGTTTTGGAGTAATTCTCATAATATTGGTAGATAGAAAGGAGCCTGGGGGGAAAGAATCCATGGCGTAGTACATCATTTTTCTTTTACCTTGCTTGTTAGGTACAGTATGGAAGATTGGAGTATTTGCGGGAGTACAAGTCGGAAATTTGGTGAGCAATTTTGTATTAGATCCTTTTAAGTTTAAAGCGATAAAACACTATTGCCATTTAAACTAGAG]
[+] EMBL OSS1776A [ CCTCCCTGTTCGCGACGAGATCCTCAAATCACTGCTAAACTGCGATCTGATTGGGTTCCACACCTTTGATTACGCGCGGCATTTCCTGTCCTGCTGCAGCCGGATGCTGGGGATCGAGTACCAGTCGAAGAGGGGATATATCGGTCTCGATTACTTTGGCCGCACTGTTGGGATAAAGATCATGCCTGTTGGGATTAACATGACGCAGCTGCAGACGCAGATCCGGCTGCCTGATCTTGAGTGGCGTGTCG CGAACTCCGGAAGCAGTTTGATGGGAAGACTGTCATGCTCGGTGTGGATGATATGGACATATTTAAGGGGATTAATCTGAAAGTTCTTGCGTTTTGAGCAGATGCTGAGGACACACCCAAAATGGCAGC CAAGGCAGTTTTGGTGCAGATT CAAA CCAA GGGTGGTTGTTGGGAGGACNTT AGNG TACA GCTNAGA TNATGA NGTT CAGGNGG T AATG ACA TTTCA GGCnggt ]
[+] EMBL BP184693 [ TTGAGAAATGGTTTTCCCCTTGCCAGGATCTTGGCATTGCTGCCGAACATGGCTACTTTATGAGAGTGGACCAGAGATGAGCAATGGCAATTGAATAACCAGTGCTCAGAATTTGGATGGATGCAGATGGCCAAGCCAGTTATGAACCTGTATACAGAAGCAACCGATGGATCATATATTGAAACCAAAGAGAGTGCTTTGGTCTGGCACCACCAAGATGCTGACCCTGGTTTTGGATCTTCACAAGCTAAAGAGATGCTAGATCATTTGGAAAGTGTTCTTGCTAATGAGCCTGTCTGTGTAAAGAGTGGCCAACAGATTGTGGAAGTGAAACCGCAGGGTGTCAGCAAAGGATTTGTTGCTGAGAAGATCCTATCAACGCTGACAGAGAACAAGAGACAGGCAGATTTTGTTCTCTGCATAGGCGATGATAGATCAGACGAGGATATGTTTGAAGGAATTGCTGATATCATGAGAAGGAGCATAGTTGATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGAAGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGGCGCTTGCAGATGCATCAGAGGAGACTGATTCACAGGAAGATGC ]
[+] EMBL AA749719 [ TGTCTGTGTAAAGAGTGGCCAACAGATTGTGGAAGTGAAACCGCA GGTGTCAGCAAAGGATTTGTTGCTGAGAAGATCCTATCAACGCTGACAGAGAATAAGAGACAGGCAGATTTTGTTCTCTGCATAGGCGATGATAGATCAGACGAGGATATGTTTGAAGGAATTGCTGATATCATGAGAAGGAGCATAGTTGATCCCCAAACATCATTATATGCGTGCAC ]
[-] EMBL CB638778 [ GCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGGCGCTTGCAGATGCATCAGAGGAGACTGATTCACAGGAAGATGCAGAAGAGATAACATCTATCCCGGACCCGGAATAGGCGTGATGATGTTTTAAATCTCCTGGTGATGTCAATGCGTCAATTGCCACCAGCAGTCTTCTTGACTAAAATTGAAGCTGATTGCCATCAGCAGGAAGTGCAACTTTAGTAATACTCAGTTAGACAAATCAATGTCAATAATCTTAGCGCTGCTCGATTTTCTGCCATTTTTCTGATTTCTCTTATGATAGTTTTGGAGTAATTCTCATAATATTGGTAGATAGAAAGGAGCCTGGGGGGAAAGAATCCATGGCGTAGTACATCATTTTTCTTTTACCTTGCTTGTTAGGTACAGTATGGAAGATTGGAGTATTTGCGGGAGTACAAGTCGAAAAT ]
consensusID : consensus_12014#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[ACAGAAGCAACCGATGGNTCATATATTGAAACCAAAGAGAGTGCTTTGGTCTGGCACCACCAAGATGCTGACCCTGGTTTTGGATCTTCACAAGCTAAAGAGATGCTNGATCATTTGGAAAGTGTTCTTGCTNATGAGCCTGTCTGTGTAAAGNGTGGCCAACAGATTGTGGAAGTGAAACCGCNGGGTGTCAGCAAAGGATTTGTTGCTGAGAAGATCCTATCAACGCTGACAGAGAACAAGAGACAGGCAGATTTTGTTCTCTGCATAGGCGATGATAGATCAGACGAGGATATGTTTGAAGGAATTGCTGATATCATGAGAAGGAGNATAGTTGATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGAAGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGGCGCTTGCAGATGCATCAGAGGAGACTGATTCACAGGAAGATGCAGAAGAGATAACATCTATCCCGGACCCGGAATAGGCGTGATGATGTTTTAAATCTCCTGGTGATGTCAATGCGTCAATTGCCACCAGNNGTCTTCCTGACTAAAATTGAAGCTGATTGCCATCAGCAGGNAGTGCAACTTTAGTNATACTCAGTTAGANAAATCAATGTCAATAATCTTAGCGCTGCTCGATTTTCTGCCAAAAAAAAAAAA]
[+] EMBL AU101936 [ACAGAAGCAACCGATGGNTCATATATTGAAACCAAAGAGAGTGCTTTGGTCTGGCACCACCAAGATGCTGACCCTGGTTTTGGATCTTCACAAGCTAAAGAGATGCTNGATCATTTGGAAAGTGTTCTTGCTNATGAGCCTGTCTGTGTAAAGNGTGGCCAACAGATTGTGGAAGTGAAACCGCNGGGTGTCAGCAAAGGATTTGTTGCTGAGAAGATCCTATCAACGCTGACAGAGAACAAGAGACAGGCAGATTTTGTTCTCTGCATAGGCGATGATAGATCAGACGAGGATATGTTTGAAGGAATTGCTGATATCATGAGAAGGAGNATAGTTGATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGAAGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGGCGCTTGCAGATGCATCAGAGGAGACTGATTCACAGGAAGATGCAGAAGAGATAACATCTATCCCGGACCCGGAATAGGCGTGATGATGTTTTAAATCTCCTGGTGATGTCAATGCGTCAATTGCCACCAGNNGTCTTCCTGACTAAAATTGAAGCTGATTGCCATCAGCAGGNAGTGCAACTTTAGTNATACTCAGTTAGANAAATCAATGTCAATAATCTTAGCGCTGCTCGATTTTCTGCCAAAAAAAAAAAA]
consensusID : consensus_12014#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence
[CACACGCACATTTTGTTCTCTGCATACGCGATGATACATCACACCACGATATGTTTGAACGAATTGCTGATATCATCACAAGGAGCATACTTGATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGAAGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGGCGCTTGCACATGCATCACAGGACACTGATTCACACGAACATCCACGACAGATAACATCTATCCCCGACCCCCGGATACGCGTCATCATGTTTTAAGTCTCCTGCTGATGTTCATGCGTCGATTGCCACCAGCAGTCTTCCTGACTTAGATTGANCTGNTT]
[+] EMBL AA754066 [CACACGCACATTTTGTTCTCTGCATACGCGATGATACATCACACCACGATATGTTTGAACGAATTGCTGATATCATCACAAGGAGCATACTTGATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGAAGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGGCGCTTGCACATGCATCACAGGACACTGATTCACACGAACATCCACGACAGATAACATCTATCCCCGACCCCCGGATACGCGTCATCATGTTTTAAGTCTCCTGCTGATGTTCATGCGTCGATTGCCACCAGCAGTCTTCCTGACTTAGATTGANCTGNTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12014#0 AGTGGGAGGCATACGTCCTCGCCAACAAGCTCTTCTCCCAGCGCGTCATCGAGGTCCTCA 60
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 ACCCCGAGGATGACTACATCTGGATCCACGATTACCACCTCCTCGCCCTCCCGTCCTTCC 120
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 TTCGCCGTCGGTTCAACAGGCTCCGCATCGGTTTCTTCCTGCACAGCCCGTTCCCTTCGT 180
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 CGGAACTCTACCGTTCCCTCCCTGTTCGCGACGAGATCCTCAAATCACTGCTAAACTGCG 240
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 ATCTGATTGGGTTCCACACCTTTGATTACGCGCGGCATTTCCTGTCCTGCTGCAGCCGGA 300
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 TGCTGGGGATCGAGTACCAGTCGAAGAGGGGATATATCGGTCTCGATTACTTTGGCCGCA 360
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 CTGTTGGGATAAAGATCATGCCTGTTGGGATTAACATGACGCAGCTGCAGACGCAGATCC 420
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 GGCTGCCTGATCTTGAGTGGCGTGTCGCCGAACTCCGGAAGCAGTTTGATGGGAAGACTG 480
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 TCATGCTCGGTGTGGATGATATGGACATATTTAAGGGGATTAATCTGAAAGTTCTTGCGT 540
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 TTGAGCAGATGCTGAGGACACACCCAAAATGGCAGCGCAAGGCAGTGTTGGTGCAGATTG 600
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 CAAACCCAAGGGGTGGTGGTGGGAAGGACCTTGAAGAGATACAGGCTGAGATTGATGAGA 660
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 GTTGCAGGAGGATAAATGCACAATTTTCACGGCCAGGATATGTTCCTGTGGTGATTATCA 720
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 ATAGAGCCCTTTCAAGTGTGGAGAGGATGGCTTATTATACCGTGGCAGAGTGTGTCGTTG 780
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 TAACTGCAGTGAGGGATGGGATGAACCTCACACCATATGAGTATATTGTCTGTAGACAGG 840
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 GATTTCCAGATTTGGATGGTTCTGGGGATGATGGGCCAAGGAGAAAGAGTATGTTAGTTG 900
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 TGTCCGAATTCATTGGTTGCTCACCATCACTTAGTGGAGCAATTCGGGTAAACCCTTGGA 960
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 ACATTGATACAACAGCAGAGGCAATGAACGAGTCGATTGCTTTATCAGAGAACGAGAAGC 1020
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 AACTGCGGCATGAGAAGCATTACAGATATGTCAGCTCACATGATGTTGCCTATTGGTCCA 1080
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 AGAGCTATATTCATGATTTGGAGAGAAGCTGCAGGGACCATTTTAGGAGGAGGTGCTGGG 1140
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 GTATTGGACTAGGATTTGGATTTAGAGTAGTTGCTCTTGACCGCAACTTCAAAAAGCTTA 1200
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 CTGTGGATTCTATCGTTACTGATTACAAGAATTCTAAGAGCAGGGTTATACTGCTAGACT 1260
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 ACGATGGAACGCTAGTACCACAAACTACAATCAACAGGACTCCAAATGAAAGTGTTGTTA 1320
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 AAATCATGAATGCTCTTTGTGACGATAAGAAGAATGTTGTTTTTATTGTTAGTGGACGAG 1380
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 GAAGGGATAGCCTTGAGAAATGGTTTTCCCCTTGCCAGGATCTTGGCATTGCTGCCGAAC 1440
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 ATGGCTACTTTATGAGGTGGACCAGAGATGAGCAATGGCAATTGAATAACCAGTGCTCAG 1500
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 AATTTGGATGGATGCAGATGGCCAAGCCAGTTATGAACCTGTATACAGAAGCAACCGATG 1560
consensus_12014#1 --------------------------------------------ACAGAAGCAACCGATG 16
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 GATCATATATTGAAACCAAAGAGAGTGCTTTGGTCTGGCACCACCAAGATGCTGACCCTG 1620
consensus_12014#1 GNTCATATATTGAAACCAAAGAGAGTGCTTTGGTCTGGCACCACCAAGATGCTGACCCTG 76
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 GTTTTGGATCTTCACAAGCTAAAGAGATGCTAGATCATTTGGAAAGTGTTCTTGCTAATG 1680
consensus_12014#1 GTTTTGGATCTTCACAAGCTAAAGAGATGCTNGATCATTTGGAAAGTGTTCTTGCTNATG 136
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 AGCCTGTCTGTGTAAAGAGTGGCCAACAGATTGTGGAAGTGAAACCGCAGGGTGTCAGCA 1740
consensus_12014#1 AGCCTGTCTGTGTAAAGNGTGGCCAACAGATTGTGGAAGTGAAACCGCNGGGTGTCAGCA 196
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 AAGGATTTGTTGCTGAGAAGATCCTATCAACGCTGACAGAGAACAAGAGACAGGCAGATT 1800
consensus_12014#1 AAGGATTTGTTGCTGAGAAGATCCTATCAACGCTGACAGAGAACAAGAGACAGGCAGATT 256
consensus_12014#2 ------------------------------------------------CACACGCACATT 12
*** *** ***
consensus_12014#0 TTGTTCTCTGCATAGGCGATGATAGATCAGACGAGGATATGTTTGAAGGAATTGCTGATA 1860
consensus_12014#1 TTGTTCTCTGCATAGGCGATGATAGATCAGACGAGGATATGTTTGAAGGAATTGCTGATA 316
consensus_12014#2 TTGTTCTCTGCATACGCGATGATACATCACACCACGATATGTTTGAACGAATTGCTGATA 72
************** ********* **** ** * ************ ************
consensus_12014#0 TCATGAGAAGGAGCATAGTTGATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGA 1920
consensus_12014#1 TCATGAGAAGGAGNATAGTTGATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGA 376
consensus_12014#2 TCATCACAAGGAGCATACTTGATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGA 132
**** * ****** *** ******************************************
consensus_12014#0 AGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGG 1980
consensus_12014#1 AGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGG 436
consensus_12014#2 AGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGG 192
************************************************************
consensus_12014#0 CGCTTGCAGATGCATCAGAGGAGACTGATTCACAGGAAGATGCAGAAGAGATAACATCTA 2040
consensus_12014#1 CGCTTGCAGATGCATCAGAGGAGACTGATTCACAGGAAGATGCAGAAGAGATAACATCTA 496
consensus_12014#2 CGCTTGCACATGCATCACAGGACACTGATTCACACGAACATCCACGACAGATAACATCTA 252
******** ******** **** *********** *** ** ** * ************
consensus_12014#0 TCCCGGACCCG-GAATAGGCGTGATGATGTTTTAAATCTCCTGGTGATGTCAATGCGTCA 2099
consensus_12014#1 TCCCGGACCCG-GAATAGGCGTGATGATGTTTTAAATCTCCTGGTGATGTCAATGCGTCA 555
consensus_12014#2 TCCCCGACCCCCGGATACGCGTCATCATGTTTTAAGTCTCCTGCTGATGTTCATGCGTCG 312
**** ***** * *** **** ** ********* ******* ****** *******
consensus_12014#0 ATTGCCACCAGCAGTCTTCCTGACTAAAATTGAAGCTGATTGCCATCAGCAGGAAGTGCA 2159
consensus_12014#1 ATTGCCACCAGNNGTCTTCCTGACTAAAATTGAAGCTGATTGCCATCAGCAGGNAGTGCA 615
consensus_12014#2 ATTGCCACCAGCAGTCTTCCTGACTTAGATTGAN-CTGNTT------------------- 352
*********** ************ * ***** *** **
consensus_12014#0 ACTTTAGTAATACTCAGTTAGACAAATCAATGTCAATAATCTTAGCGCTGCTCGATTTTC 2219
consensus_12014#1 ACTTTAGTNATACTCAGTTAGANAAATCAATGTCAATAATCTTAGCGCTGCTCGATTTTC 675
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 TGCCATTTTTCTGATTTCTCTTATGATAGTTTTGGAGTAATTCTCATAATATTGGTAGAT 2279
consensus_12014#1 TGCCAAAAAAAAAAAA-------------------------------------------- 691
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 AGAAAGGAGCCTGGGGGGAAAGAATCCATGGCGTAGTACATCATTTTTCTTTTACCTTGC 2339
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 TTGTTAGGTACAGTATGGAAGATTGGAGTATTTGCGGGAGTACAAGTCGGAAATTTGGTG 2399
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 AGCAATTTTGTATTAGATCCTTTTAAGTTTAAAGCGATAAAACACTATTGCCATTTAAAC 2459
consensus_12014#1 ------------------------------------------------------------
consensus_12014#2 ------------------------------------------------------------
consensus_12014#0 TAGAG 2464
consensus_12014#1 -----
consensus_12014#2 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||