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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12016#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 877 fasta sequence
[CCTCCCGAGTCCAGACTCCGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG-TTCGAGAAATCGCTG-CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC-AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA-CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA-TCAG-TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGTCTTTCTGTTATGTATGATCTCTGGGAGTGATGTTCCATTTTACTATCAGTTATTCAT]
[+] EMBL CF332511 [CCTCCCGAGTCCAGACTCCGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCGGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTG ]
[+] EMBL AU062990 [ cnnaatTCCAGACTCCCNCCGNAGCCGCATCGCCAATCANATAGCCGCCGAGGTTNAGGTGAGCCACCGANAGGGGAGANAGAGCNCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGA NTCAANATCGGGGAAGANTTCTTNAAGGCCAAGTGCCTGATGAACTGCNAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATNTNGGACGGGGACCCGTCGTCGCAGGTTTCGCAGGTT TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGCAAGGTn ]
[+] EMBL AK121401 [ GACTCCGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGGGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGTCTTTCTGTTATGTATGATCTCTGGGAGTGATGTTCCATTTTACTATCAGTTATTCAT]
[+] EMBL BF430709 [ CGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA TCAG TGTATCACCTTCA ]
[+] EMBL CA758725 [ CATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAG AAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGGCTTTCTGTTATGTATGATCTCTGGG ]
[+] EMBL BI798455 [ GTGTTTCGAGAAATC CTGCCAGTACGTGAA CGGTTCAGCCGGTACAAGAACCCGGACCCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACCTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCC AAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGCGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTtaaaaa ]
[+] EMBL AU092550 [ GCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTNCCTCCGNTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAa ]
[+] EMBL BI794863 [ CAGCGAGAAGATCGAC AGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCCAATCGATCC AAGTTCTGCTGTGTACTCAGCTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTC ATATCTATCTAGCGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGTCTTTCTGTTAaaaaaa ]
[+] EMBL BI800015 [ GATATCAAATCGATCC AAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGCGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTaaaaaaaaa ]
consensusID : consensus_12016#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[GAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTGTTCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTATCAGTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAAAA]
[+] EMBL C97920 [GAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTGTTCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTATCAGTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12016#0 CCTCCCGAGTCCAGACTCCGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGA 60
consensus_12016#1 ------------------------------------------------------------
consensus_12016#0 GGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAAC 120
consensus_12016#1 --------------------------------------------------------GAAC 4
****
consensus_12016#0 GCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAG 180
consensus_12016#1 GCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAG 64
************************************************************
consensus_12016#0 GTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCG 240
consensus_12016#1 GTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCG 124
************************************************************
consensus_12016#0 TCGTCGCAGGTGTCGCAGGTGTTCGAGAAATCGCTGCAGTACGTGAAGCGGTTCAGCCGG 300
consensus_12016#1 TCGTCGCAGGTGTCGCAGGTGTTCGAGAA------------------------------- 153
*****************************
consensus_12016#0 TACAAGAACCCGGACGCGGTGAGGCAGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCC 360
consensus_12016#1 ------------------------------------------------------------
consensus_12016#0 GAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCC 420
consensus_12016#1 ------------------------------------------------------------
consensus_12016#0 CTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATC 480
consensus_12016#1 --------------------------------------------------------GATC 157
****
consensus_12016#0 GACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTA 540
consensus_12016#1 GACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTA 217
************************************************************
consensus_12016#0 TCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAA 600
consensus_12016#1 TCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAA 277
************************************************************
consensus_12016#0 TCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGAT 660
consensus_12016#1 TCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGAT 337
************************************************************
consensus_12016#0 CCAAAGTTCTGCTGTGTATCAGTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAA 720
consensus_12016#1 CCAAAGTTCTGCTGTGTATCAGTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAA 397
************************************************************
consensus_12016#0 ACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAGGAGGTGAATTGGA 780
consensus_12016#1 ACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAAAA----------- 446
********************************************** *
consensus_12016#0 GTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGTCTTTCTGTTATGTATGATCT 840
consensus_12016#1 ------------------------------------------------------------
consensus_12016#0 CTGGGAGTGATGTTCCATTTTACTATCAGTTATTCAT 877
consensus_12016#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||