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Oryza sativa
cluster # 12021 cluster # 12021       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12021#0 length = 1629 sequences # 7  
consensus_12021#1 length = 650 sequences # 2  
consensus_12021#2 length = 277 sequences # 1  

consensusID : consensus_12021#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1629
fasta sequence
                              [CCATCGAGAGTTCGCCAGAAGGAAGAAACCTAACCCTAAGATTGCGATTCGGCGGCAGCGACGAGGCGCGGGCGGAGATGAGGAGGCCCACCATAGAAGAGAAACTGGCGACCTACTCCATGTTCCAGGTTCGTCAGGGATCCACCGTCCCGATCACCGCGCGGGAGTGGCTGGACTCTGTGATGGCTGGAGTTGGCTCGATCTCTCTGGCGGTGCGGGGTGCTGGCTCGATCTCGGCGGCGGCAGGAGCGGGAGATGGGGCTTGCTCGAGCTCAGTGGCGGTGGCGGGGACTGGCTCGATCTCGGCGGCGGGAGCGGCAGATGGGCCTTCCTCAAGCTCAGTGGCGGTGGCGGGGACTGGCTTGATCTCGGCGGCGGGAGCGGCAGATGGGGCTTGCTCGAGCTCAGTGGCGGTGGCGGGGACTGGCTCGATCTCGGCGGCGCGAGCGGGAGATGGGCCTTTCTCGAGCTCAGTGGCGGGGGCGGGGGCTGGCTCCATCTCGGCGACGGCGGGAGCGGGACATGGAGCTGGGTCGAGCTCAGTTGCGGCGGCGGGGTCAGGCGAAGCCCCGGCGAGGAGGAAGAGGACGCCTGGGAGATGGAGGAGGATCCCTCGCACGCTACCTCATCCTTGCCTGAGAAAGAGGCCCATGACATGGGAGGAGCTTCTCGCGGACAGCTTGGACATGAGCGATGAGGTTCACTGCTTCAGAGAGGAGGATAAGCCCGCTTTCCGCAAGTCCAAGGCGCAGATGGCCAGGTTCTATCAGAGGATGATCGACATCGAGAATAACAAGATCAAACAAATCTTCCGACCCCGCGTCCCATCCGATACACACGAGCAACATTTGACCGCAGAAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTCTTCCCAAGCTTGTCACTTTGCCAATTTAGCAATTAACCACTACAACAATATTGAGGAGAACATTGTTAAGATTGAGCTTTGTACTGTTCTTTTATCAAATTGTTTTCATGAGATCTGTGGGTCCACATACGCCCATGTCAACTTTACTGCCAGGGCTGAGGATGATGATCAGGCTAAGAAGAGACTATACTTTGCAGAGCTCAAGTTGAATCCGGATCTTCTGGCAAAGAGGAGGGAACGCTTTGTAGAGTTGAGCCTTGATCCAAATATTGTTGGATGTGCTGATGATATCGAGCCCATGTGTGTCGTCTCTATACACAATCTTCAGGGTTCTTGTTTTGGTGGATGCCATGAGATCAACAGGAGAATTGATTATGTAATGATCAGGAATCAGGACTACGAGCGTTGTCACGCATGTAGCGATCGTATCAAGCATCCATACGGGACAGAATTTATTGCAGGGCATGATAGTTCCAAGATTCCGTATTACACTGCAGGCTGATGTAATAATAATATGATTAGAGCTATGACTTGGAGTATTGTTAGAATTTAGACTCTTTATTTATGCTTTGACATCTATGTGCGCGAGTGATCTCTTCTAATGC-GCAAATATTACCTGATGAAGTAGCCAGGATCTTTAATGAAGCCTCTATGGTATGTCTACTGTAACCAGGATCATTAATGCTCTATTCAGTTGCTCCCTCTGGGCTAGTATTAACAGTGGATGAAAAAAA]

[+] EMBL AK067522             [CCATCGAGAGTTCGCCAGAAGGAAGAAACCTAACCCTAAGATTGCGATTCGGCGGCAGCGACGAGGCGCGGGCGGAGATGAGGAGGCCCACCATAGAAGAGAAACTGGCGACCTACTCCATGTTCCAGGTTCGTCAGGGATCCACCGTCCCGATCACCGCGCGGGAGTGGCTGGACTCTGTGATGGCTGGAGTTGGCTCGATCTCTCTGGCGGTGCGGGGTGCTGGCTCGATCTCGGCGGCGGCAGGAGCGGGAGATGGGGCTTGCTCGAGCTCAGTGGCGGTGGCGGGGACTGGCTCGATCTCGGCGGCGGGAGCGGCAGATGGGCCTTCCTCAAGCTCAGTGGCGGTGGCGGGGACTGGCTTGATCTCGGCGGCGGGAGCGGCAGATGGGGCTTGCTCGAGCTCAGTGGCGGTGGCGGGGACTGGCTCGATCTCGGCGGCGCGAGCGGGAGATGGGCCTTTCTCGAGCTCAGTGGCGGGGGCGGGGGCTGGCTCCATCTCGGCGACGGCGGGAGCGGGACATGGAGCTGGGTCGAGCTCAGTTGCGGCGGCGGGGTCAGGCGAAGCCCCGGCGAGGAGGAAGAGGACGCCTGGGAGATGGAGGAGGATCCCTCGCACGCTACCTCATCCTTGCCTGAGAAAGAGGCCCATGACATGGGAGGAGCTTCTCGCGGACAGCTTGGACATGAGCGATGAGGTTCACTGCTTCAGAGAGGAGGATAAGCCCGCTTTCCGCAAGTCCAAGGCGCAGATGGCCAGGTTCTATCAGAGGATGATCGACATCGAGAATAACAAGATCAAACAAATCTTCCGACCCCGCGTCCCATCCGATACACACGAGCAACATTTGACCGCAGAAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTCTTCCCAAGCTTGTCACTTTGCCAATTTAGCAATTAACCACTACAACAATATTGAGGAGAACATTGTTAAGATTGAGCTTTGTACTGTTCTTTTATCAAATTGTTTTCATGAGATCTGTGGGTCCACATACGCCCATGTCAACTTTACTGCCAGGGCTGAGGATGATGATCAGGCTAAGAAGAGACTATACTTTGCAGAGCTCAAGTTGAATCCGGATCTTCTGGCAAAGAGGAGGGAACGCTTTGTAGAGTTGAGCCTTGATCCAAATATTGTTGGATGTGCTGATGATATCGAGCCCATGTGTGTCGTCTCTATACACAATCTTCAGGGTTCTTGTTTTGGTGGATGCCATGAGATCAACAGGAGAATTGATTATGTAATGATCAGGAATCAGGACTACGAGCGTTGTCACGCATGTAGCGATCGTATCAAGCATCCATACGGGACAGAATTTATTGCAGGGCATGATAGTTCCAAGATTCCGTATTACACTGCAGGCTGATGTAATAATAATATGATTAGAGCTATGACTTGGAGTATTGTTAGAATTTAGACTCTTTATTTATGCTTTGACATCTATGTGCGCGAGTGATCTCTTCTAATGC GCAAATATTACCTGATGAAGTAGCCAGGATCTTTAATGAAGCCTCTATGGTATGTCTACTGTAACCAGGATCATTAATGCTCTATTCAGTTGCTCCCTCTGGGC                         ]
[+] EMBL CB679607             [                  AAGGACGTAACCTAACCCTAAGATTGCGATTCGGCGGCAGCGACGAGGCGCGGGCGGAGATGAGGAGGCCCACCATAGAAGAGAAACTGGCGACCTACTCCATGTTCCAGGTTCGTCAGGGATCCACCGTCCCGATCACCGCGCGGGAGTGGCTGGACTCTGTGATGGCTGGAGTTGGCTCGATCTCTCTGGCGGTGCGGGGTGCTGGCTCGATCTCGGCGGCGGCAGGAGCGGGAGATGGGGCTTGCTCGAGCTCAGTGGCGGTGGCGGGGACTGGCTCGATCTCGGCGGCGGGAGCGGCAGATGGGCCTTCCTCAAGCTCAGTGGCGGTGGCGGGGACTGGCTTGATCTCGGCGGCGGGAGCGGCAGATGGGGCTTGCTCGAGCTCAGTGGCGGTGGCGGGGACTGGCTCGATCTCGGCGGCGCGAGCGGGAGATGGGCCTTTCTCGAGCTCAGTGGCGGGAGCGGGGGCTGGCTCCATCTCGGCGACGGCGGGAGCGGGACATGGAGCTGGGTCGAGCTCAGTTGCGGCGGCGGGGTCAGGCGAAGCCCCGGCGAGGAGGAAGAGGACGCCTGGGAGATGGAGGAGGATCCCTCGCACGCTACCTCATCCTTGCCTGAGAAAGAGGCCCATGACATGGGAGGAGCTTCTCGCGGACAGCTTGGACATGAGCGATGAGGTTCACTGCTTCAGAGAGGAGGATAAGCCCGCTTTCCGCAAGTCCAAGGCGCAGATGGCCAGGTTCTATCAGAGGATGATCGACATCGAGAATAACNAGATCAAACAAATCTTCCGACCCCGCGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB646946             [                             CTAACCCTAAGATTGCGATTCGGCGGCAGCGACGAGGCGCGGGCGGAGATGAGGAGGCCCACCATAGAAGAGAAACTGGCGACCTACTCCATGTTCCAGGTTCGTCAGGGATCCACCGTCCCGATCACCGCGCGGGAGTGGCTGGACTCTGTGATGGCTGGAGTTGGCTCGATCTCTCTGGCGGTGCGGGGTGCTGGCTCGATCTCGGCGGCGGCAGGAGCGGGAGATGGGGCTTGCTCGAGCTCAGTGGCGGTGGCGGGGACTGGCTCGATCTCGGCGGCGGGAGCGGCAGATGGGCCTTCCTCAAGCTCAGTGGCGGTGGCGGGGACTGGCTTGATCTCGGCGGCGGGAGCGGCAGATGGGGCTTGCTCGAGCTCAGTGGCGGTGGCGGGGACTGGCTCGATCTCGGCGGCGCGAGCGGGAGATGGGCCTTTCTCGAGCTCAGTGGCGGGGGCGGGGGCTGGCTCCATCTCGGCGACGGCGGGAGCGGGACATGGAGCTGGGTCGAGCTCAGTTGCGGCGGCGGGGTCAGGCGAAGCCCCGGCGAGGAGGAAGAGGACGCCTGGGAGATGGAGGAGGATCCCTCGCACGCTACCTCATCCTTGCCTGAGANAGAGGCCCATGACATGGGAGGAGCTTCTCGCGGACAGCTTGGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB679608             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CACACGAGCAACATTTGACCGCAGAAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTCTTCCCAAGCTTGTCACTTTGCCAATTTAGCAATTAACCACTACAACAATATTGAGGAGAACATTGTTAAGATTGAGCTTTGTACTGTTCTTTTATCAAATTGTTTTCATGAGATCTGTGGGTCCACATACGCCCATGTCAACTTTACTGCCAGGGCTGAGGATGATGATCAGGCTAAGAAGAGACTATACTTTGCAGAGCTCAAGTTGAATCCGGATCTTCTGGCAAAGAGGAGGGAACGCTTTGTAGAGTTGAGCCTTGATCCAAATATTGTTGGATGTGCTGATGATATCGAGCCCATGTGTGTCGTCTCTATACACAATCTTCAGGGTTCTTGTTTTGGTGGATGCCATGAGATCAACAGGAGAATTGATTATGTAATGATCAGGAATCAGGACTACGAGCGTTGTCACGCATGTAGCGATCGTATCAAGCATCCATACGGGACAGAATTTATTGCAGGGCATGATAGTTCCAAGATTCCGTATTACACTGCAGGCTGATGTAATAATAATATGATTAGAGCTATGACTTGGAGTATTGTTAGAATTTAGACTCTTTATTTATGCTTTGACATCTATGTGCGCGAGTGATCTCTTTTAATGC GCAAATATTACCTGATGAAGTAGCCAGGATCTTTAATGAAGCCTCTATGGTATGTCTACTGTAACCAGGATCATTAATAATGTATTCAGTTGCTCCCTCTGGGCTAGTATTAAC               ]
[-] EMBL CB646947             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTCTTCCCAAGCTTGTCACTTTGCCAATTTAGCAATTAACCACTACAACAATATTGAGGAGAACATTGTTAAGATTGAGCTTTGTACTGTTCTTTTATCAAATTGTTTTCATGAGATCTGTGGGTCCACATACGCCCATGTCAACTTTACTGCCAGGGCTGAGGATGATGATCAGGCTAAGAAGAGACTATACTTTGCAGAGCTCAAGTTGAATCCGGATCTTCTGGCAAAGAGGAGGGAACGCTTTGTAGAGTTGAGCCTTGATCCAAATATTGTTGGATGTGCTGATGATATCGAGCCCATGTGTGTCGTCTCTATACACAATCTTCAGGGTTCTTGTTTTGGTGGATGCCATGAGATCACCAGGAGAATTGATTATGTAATGATCAGGAATCAGGACTACGAGCGTTGTCACGCATGTAGCGATCGTATCAAGCATCCATACGGGACAGAATTTATTGCAGGGCATGATAGTTCCAAGATTCCGTATTACACTGCAGGCTGATGTAATAATAATATGATTAGAGCTATGACTTGGAGTATTGTTAGAATTTAGACTCTTTATTTATGCTTTGACATCTATGTGCGCGAGTGATCTCTTCTAATGC GCAAATATTCCCTGATGAAGTAGCCAGGATCTTTAATGAAGCCTCTATGGTATGTCTACTGTAACCAGGATCATTAATGCTCTATTCA                                         ]
[+] EMBL AU174403             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTAGAGTTGAGCCTTGATCCAAATATTGTTGGATGTGCTGATGATATCGAGCCCATGTGTGTCGTCTCTATACACAATCTTCAGGGTTCTTGTTTTGGTGGATGCCATGAGATCAACAGGAGAATTGATTATGTAATGATCAGGAATCAGGACTACGAGCGTTGTCACGC TGTAGCGATCGTATCAAGCATCCATACGGGACAGAATTTATTGCAGGGCATGATAGTTCCAAGATTCCGTATTACACTGCAGGCTGATGTAATAATAATATGATTAGAGCTATGACTTGGAGTATTGTTAGAATTTAGACTCTTTATTTATGCTTTGACATCTATGTGCGCGAGTGATCTCTTNTAATGCGGCAAATATTACCTGATGAAGTAGCCAGGATCTTTAATGAAGCCTCTATGGTATGTCTACTGTAAaaaaaaa                                                          ]
[-] EMBL CF293793             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATGCCATGAGATCAACAGGAGAATTGATTATGTAATGATCAGGAATCAGGACTACGAGCGTTGTCACGCATGTAGCGATCGTATCAAGCATCCATACGGGACGGAATTTATTGCAGGGCATGATAGTTCCAAGATTCCGTATTACACTGCAGGCTGATGTAATAATAATATGATTAGAGCTATGACTTGGAGTATTGTTAGAATTTAGACTCTTTATTTATGCTTTGACATCTATGTGCGCGAGTGATCTCTTTTAATGC GCAAATATTACCTGATGAAGTAGCCAGGATCTTTAATGAAGCCTCTATGGTATGTCTACTGTAACCAGGATCATTAATGCTCTATTCAGTTGCTCCCTCTGGGCTAGTATTATTAGTGGATGAAAAAAA]


>consensus_12021#0 CCATCGAGAGTTCGCCAGAAGGAAGAAACCTAACCCTAAGATTGCGATTCGGCGGCAGCG ACGAGGCGCGGGCGGAGATGAGGAGGCCCACCATAGAAGAGAAACTGGCGACCTACTCCA TGTTCCAGGTTCGTCAGGGATCCACCGTCCCGATCACCGCGCGGGAGTGGCTGGACTCTG TGATGGCTGGAGTTGGCTCGATCTCTCTGGCGGTGCGGGGTGCTGGCTCGATCTCGGCGG CGGCAGGAGCGGGAGATGGGGCTTGCTCGAGCTCAGTGGCGGTGGCGGGGACTGGCTCGA TCTCGGCGGCGGGAGCGGCAGATGGGCCTTCCTCAAGCTCAGTGGCGGTGGCGGGGACTG GCTTGATCTCGGCGGCGGGAGCGGCAGATGGGGCTTGCTCGAGCTCAGTGGCGGTGGCGG GGACTGGCTCGATCTCGGCGGCGCGAGCGGGAGATGGGCCTTTCTCGAGCTCAGTGGCGG GGGCGGGGGCTGGCTCCATCTCGGCGACGGCGGGAGCGGGACATGGAGCTGGGTCGAGCT CAGTTGCGGCGGCGGGGTCAGGCGAAGCCCCGGCGAGGAGGAAGAGGACGCCTGGGAGAT GGAGGAGGATCCCTCGCACGCTACCTCATCCTTGCCTGAGAAAGAGGCCCATGACATGGG AGGAGCTTCTCGCGGACAGCTTGGACATGAGCGATGAGGTTCACTGCTTCAGAGAGGAGG ATAAGCCCGCTTTCCGCAAGTCCAAGGCGCAGATGGCCAGGTTCTATCAGAGGATGATCG ACATCGAGAATAACAAGATCAAACAAATCTTCCGACCCCGCGTCCCATCCGATACACACG AGCAACATTTGACCGCAGAAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTCTTCCC AAGCTTGTCACTTTGCCAATTTAGCAATTAACCACTACAACAATATTGAGGAGAACATTG TTAAGATTGAGCTTTGTACTGTTCTTTTATCAAATTGTTTTCATGAGATCTGTGGGTCCA CATACGCCCATGTCAACTTTACTGCCAGGGCTGAGGATGATGATCAGGCTAAGAAGAGAC TATACTTTGCAGAGCTCAAGTTGAATCCGGATCTTCTGGCAAAGAGGAGGGAACGCTTTG TAGAGTTGAGCCTTGATCCAAATATTGTTGGATGTGCTGATGATATCGAGCCCATGTGTG TCGTCTCTATACACAATCTTCAGGGTTCTTGTTTTGGTGGATGCCATGAGATCAACAGGA GAATTGATTATGTAATGATCAGGAATCAGGACTACGAGCGTTGTCACGCATGTAGCGATC GTATCAAGCATCCATACGGGACAGAATTTATTGCAGGGCATGATAGTTCCAAGATTCCGT ATTACACTGCAGGCTGATGTAATAATAATATGATTAGAGCTATGACTTGGAGTATTGTTA GAATTTAGACTCTTTATTTATGCTTTGACATCTATGTGCGCGAGTGATCTCTTCTAATGC GCAAATATTACCTGATGAAGTAGCCAGGATCTTTAATGAAGCCTCTATGGTATGTCTACT GTAACCAGGATCATTAATGCTCTATTCAGTTGCTCCCTCTGGGCTAGTATTAACAGTGGA TGAAAAAAA



consensusID : consensus_12021#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 650
fasta sequence
                              [TGACTGGACTGAAGGAGTAGAAACAAACAAATCTTCCGACCCCGCGTCCCATCCGATACACACGAGCAACATTTGACCGCAGAAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTCTTCCCAAGCTTGTCACTTTGCCAATTTAGCAATTAACCACTACAACAATATTGAGGAGAACATTGTTAAGATTGAGCTTTGTACTGTTCTTTTATCAAATTGTTTTCATGAGATCTGTGGGTCCACATACGCCCATGTCAACTTTACTGCCAGGGCTGAGGATGATGATCAGGCTAAGAAGAGACTATACTTTGCAGAGCTCAAGTTGAATCCGGATCTTCTGGCAAAGAGGAGGGAACGCTTTGTAGAGTTGAGCCTTGATCCAAATATTGTTGGATGTGCTGATGATATCGAGCCCATGTGTGTCGTCTCTATACACAATCTTCAGGGTTCTTGTTTTGGTGGATGCCATGAGATCAACAGGAGAATTGATTATGTAATGATCAGGAATCAGGACTACGAGCGTTGTCACGCATGTAGCGATCGTATCAAGCATCCATACGGGACGGAATTTATTGCAGGGCATGATAGTTCCAAGATTCCGTATTACACTGCANGCTGATGTAATAATAATATGATTAGAGCTATGAC]

[+] EMBL CF293792             [TGACTGGACTGAAGGAGTAGAAACAAACAAATCTTCCGACCCCGCGTCCCATCCGATACACACGAGCAACATTTGACCGCAGAAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTCTTCCCAAGCTTGTCACTTTGCCAATTTAGCAATTAACCACTACAACAATATTGAGGAGAACATTGTTAAGATTGAGCTTTGTACTGTTCTTTTATCAAATTGTTTTCATGAGATCTGTGGGTCCACATACGCCCATGTCAACTTTACTGCCAGGGCTGAGGATGATGATCAGGCTAAGAAGAGACTATACTTTGCAGAGCTCAAGTTGAATCCGGATCTTCTGGCAAAGAGGAGGGAACGCTTTGTAGAGTTGAGCCTTGATCCAAATATTGTTGGATGTGCTGATGATATCGAGCCCATGTGTGTCGTCTCTATACACAATCTTCAGGGTTCTTGTTTTGGTGGATGCCATGAGATCAACAGGAGAATTGATTATGTAATGATCAGGAATCAGGACTACGAGCGTTGTCACGCATGTAGCGATCGTATCAAGCATCCATACGGGACGGAATTTATTGCAGGGCATGATAGTTCCAAGATTCCGTATTACACTGCANGCTGATGTAATAATAATATGATTAGAGCTATGAC]
[+] EMBL OSS16320A            [                                                                                                                                                                        ATTGAGGAGAACATTGTTAAGATTGAGCTTTGTACTGTNCTTTTATCAAATTGTTTTCATGAGATCTNTGGGTCCACATACGCCCATGTCAACTTTACTGCCAGGGCTGAGGATGATGATCAGGCTAAGAAGAGACTATACTTTGCAGAGCTCAAGTTGAATCCGGATCTTCTGGCAAAGAGGAGGGAACGCTTTGTAGAGTTGAGCCTTGATCCAAATATTGTTGGATGTGCTGATGATATCGAGCCCATGTGTGTCGTCTCTATACACAATCTTCAGGGTTCTTGTTTTGGTGGATGCCATGNGATCAAC                                                                                                                                                                          ]


>consensus_12021#1 TGACTGGACTGAAGGAGTAGAAACAAACAAATCTTCCGACCCCGCGTCCCATCCGATACA CACGAGCAACATTTGACCGCAGAAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTCT TCCCAAGCTTGTCACTTTGCCAATTTAGCAATTAACCACTACAACAATATTGAGGAGAAC ATTGTTAAGATTGAGCTTTGTACTGTTCTTTTATCAAATTGTTTTCATGAGATCTGTGGG TCCACATACGCCCATGTCAACTTTACTGCCAGGGCTGAGGATGATGATCAGGCTAAGAAG AGACTATACTTTGCAGAGCTCAAGTTGAATCCGGATCTTCTGGCAAAGAGGAGGGAACGC TTTGTAGAGTTGAGCCTTGATCCAAATATTGTTGGATGTGCTGATGATATCGAGCCCATG TGTGTCGTCTCTATACACAATCTTCAGGGTTCTTGTTTTGGTGGATGCCATGAGATCAAC AGGAGAATTGATTATGTAATGATCAGGAATCAGGACTACGAGCGTTGTCACGCATGTAGC GATCGTATCAAGCATCCATACGGGACGGAATTTATTGCAGGGCATGATAGTTCCAAGATT CCGTATTACACTGCANGCTGATGTAATAATAATATGATTAGAGCTATGAC



consensusID : consensus_12021#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence
                              [CCCTAAGATTGCNATTCGGCGACANTTGGACATGAGCGATGAGGTTCACTGCTTCANAGAGGAGGATAAGCCCGCTTTCCGCAAGTCCAAGGCGCAGATGGCCAGGTTCTATCAGAGGATGATCGACATCGAGAATAACAAGATCAAACAAATNTTCCGACCCCGCGTCCCATCCGATACACACGAGCAACATTTGACCGCAGAAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTCTTCCCAAGCTTGTCACTTTTCCAATTTAGCANTTAAC]

[+] EMBL OS1321881            [CCCTAAGATTGCNATTCGGCGACANTTGGACATGAGCGATGAGGTTCACTGCTTCANAGAGGAGGATAAGCCCGCTTTCCGCAAGTCCAAGGCGCAGATGGCCAGGTTCTATCAGAGGATGATCGACATCGAGAATAACAAGATCAAACAAATNTTCCGACCCCGCGTCCCATCCGATACACACGAGCAACATTTGACCGCAGAAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTCTTCCCAAGCTTGTCACTTTTCCAATTTAGCANTTAAC]


>consensus_12021#2 CCCTAAGATTGCNATTCGGCGACANTTGGACATGAGCGATGAGGTTCACTGCTTCANAGA GGAGGATAAGCCCGCTTTCCGCAAGTCCAAGGCGCAGATGGCCAGGTTCTATCAGAGGAT GATCGACATCGAGAATAACAAGATCAAACAAATNTTCCGACCCCGCGTCCCATCCGATAC ACACGAGCAACATTTGACCGCAGAAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTC TTCCCAAGCTTGTCACTTTTCCAATTTAGCANTTAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12021#0      CCATCGAGAGTTCGCCAGAAGGAAGAAACCTAACCCTAAGATTGCGATTCGGCGGCAGCG 60
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      ACGAGGCGCGGGCGGAGATGAGGAGGCCCACCATAGAAGAGAAACTGGCGACCTACTCCA 120
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      TGTTCCAGGTTCGTCAGGGATCCACCGTCCCGATCACCGCGCGGGAGTGGCTGGACTCTG 180
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      TGATGGCTGGAGTTGGCTCGATCTCTCTGGCGGTGCGGGGTGCTGGCTCGATCTCGGCGG 240
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      CGGCAGGAGCGGGAGATGGGGCTTGCTCGAGCTCAGTGGCGGTGGCGGGGACTGGCTCGA 300
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      TCTCGGCGGCGGGAGCGGCAGATGGGCCTTCCTCAAGCTCAGTGGCGGTGGCGGGGACTG 360
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      GCTTGATCTCGGCGGCGGGAGCGGCAGATGGGGCTTGCTCGAGCTCAGTGGCGGTGGCGG 420
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      GGACTGGCTCGATCTCGGCGGCGCGAGCGGGAGATGGGCCTTTCTCGAGCTCAGTGGCGG 480
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      GGGCGGGGGCTGGCTCCATCTCGGCGACGGCGGGAGCGGGACATGGAGCTGGGTCGAGCT 540
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      CAGTTGCGGCGGCGGGGTCAGGCGAAGCCCCGGCGAGGAGGAAGAGGACGCCTGGGAGAT 600
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      GGAGGAGGATCCCTCGCACGCTACCTCATCCTTGCCTGAGAAAGAGGCCCATGACATGGG 660
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      -------------------------------------------------------CCCTA 5
                                                                                   

consensus_12021#0      AGGAGCTTCTCGCGGACAGCTTGGACATGAGCGATGAGGTTCACTGCTTCAGAGAGGAGG 720
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      AGATTGCNATTCGGCGACANTTGGACATGAGCGATGAGGTTCACTGCTTCANAGAGGAGG 65
                                                                                   

consensus_12021#0      ATAAGCCCGCTTTCCGCAAGTCCAAGGCGCAGATGGCCAGGTTCTATCAGAGGATGATCG 780
consensus_12021#1      ------------------------------------------------------TGACTG 6
consensus_12021#2      ATAAGCCCGCTTTCCGCAAGTCCAAGGCGCAGATGGCCAGGTTCTATCAGAGGATGATCG 125
                                                                             ***  *

consensus_12021#0      ACATCGAGAATAACAAGATCAAACAAATCTTCCGACCCCGCGTCCCATCCGATACACACG 840
consensus_12021#1      GACTGAAGG--AGTAGAAACAAACAAATCTTCCGACCCCGCGTCCCATCCGATACACACG 64
consensus_12021#2      ACATCGAGAATAACAAGATCAAACAAATNTTCCGACCCCGCGTCCCATCCGATACACACG 185
                          *  **   *  *  * ********* *******************************

consensus_12021#0      AGCAACATTTGACCGCAGAAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTCTTCCC 900
consensus_12021#1      AGCAACATTTGACCGCAGAAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTCTTCCC 124
consensus_12021#2      AGCAACATTTGACCGCAGAAGAGATGGAGGCAGAGTTCGCTGGCAAGAAAGTTTCTTCCC 245
                       ************************************************************

consensus_12021#0      AAGCTTGTCACTTTGCCAATTTAGCAATTAACCACTACAACAATATTGAGGAGAACATTG 960
consensus_12021#1      AAGCTTGTCACTTTGCCAATTTAGCAATTAACCACTACAACAATATTGAGGAGAACATTG 184
consensus_12021#2      AAGCTTGTCACTTTTCCAATTTAGCANTTAAC---------------------------- 277
                       ************** *********** *****                            

consensus_12021#0      TTAAGATTGAGCTTTGTACTGTTCTTTTATCAAATTGTTTTCATGAGATCTGTGGGTCCA 1020
consensus_12021#1      TTAAGATTGAGCTTTGTACTGTTCTTTTATCAAATTGTTTTCATGAGATCTGTGGGTCCA 244
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      CATACGCCCATGTCAACTTTACTGCCAGGGCTGAGGATGATGATCAGGCTAAGAAGAGAC 1080
consensus_12021#1      CATACGCCCATGTCAACTTTACTGCCAGGGCTGAGGATGATGATCAGGCTAAGAAGAGAC 304
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      TATACTTTGCAGAGCTCAAGTTGAATCCGGATCTTCTGGCAAAGAGGAGGGAACGCTTTG 1140
consensus_12021#1      TATACTTTGCAGAGCTCAAGTTGAATCCGGATCTTCTGGCAAAGAGGAGGGAACGCTTTG 364
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      TAGAGTTGAGCCTTGATCCAAATATTGTTGGATGTGCTGATGATATCGAGCCCATGTGTG 1200
consensus_12021#1      TAGAGTTGAGCCTTGATCCAAATATTGTTGGATGTGCTGATGATATCGAGCCCATGTGTG 424
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      TCGTCTCTATACACAATCTTCAGGGTTCTTGTTTTGGTGGATGCCATGAGATCAACAGGA 1260
consensus_12021#1      TCGTCTCTATACACAATCTTCAGGGTTCTTGTTTTGGTGGATGCCATGAGATCAACAGGA 484
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      GAATTGATTATGTAATGATCAGGAATCAGGACTACGAGCGTTGTCACGCATGTAGCGATC 1320
consensus_12021#1      GAATTGATTATGTAATGATCAGGAATCAGGACTACGAGCGTTGTCACGCATGTAGCGATC 544
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      GTATCAAGCATCCATACGGGACAGAATTTATTGCAGGGCATGATAGTTCCAAGATTCCGT 1380
consensus_12021#1      GTATCAAGCATCCATACGGGACGGAATTTATTGCAGGGCATGATAGTTCCAAGATTCCGT 604
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      ATTACACTGCAGGCTGATGTAATAATAATATGATTAGAGCTATGACTTGGAGTATTGTTA 1440
consensus_12021#1      ATTACACTGCANGCTGATGTAATAATAATATGATTAGAGCTATGAC-------------- 650
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      GAATTTAGACTCTTTATTTATGCTTTGACATCTATGTGCGCGAGTGATCTCTTCTAATGC 1500
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      GCAAATATTACCTGATGAAGTAGCCAGGATCTTTAATGAAGCCTCTATGGTATGTCTACT 1560
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      GTAACCAGGATCATTAATGCTCTATTCAGTTGCTCCCTCTGGGCTAGTATTAACAGTGGA 1620
consensus_12021#1      ------------------------------------------------------------
consensus_12021#2      ------------------------------------------------------------
                                                                                   

consensus_12021#0      TGAAAAAAA 1629
consensus_12021#1      ---------
consensus_12021#2      ---------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)