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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12023#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1896 fasta sequence
[ACACTTGTTTCCCCCCATTTCCCTCCAACCCCGGACACCCCGCACACGTACGAACAGGCCACAAATCCTCAAATATCGGACAGCGCAGGGATCGAACGCAGAGGAAATCCAAAATCCAAAATCCGATCCCCTCGAACCAAAGAATTCGAAGCGCGCAGGCGGGCACACGCCCCAAATGCGCCGGCGGACGACGCGCGCCGCCGCAGAAGCAGCACGGCGCCGATGAGTCGCGCCCCTCCGGACGCCGCCGGCGACCTCTTCGCCGCCAACCTCAAGGGCTCCCTCCTCGCCGTCGCCTCCTCCGCGTTCATCGGGGTCAGCTTCATTGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAGGTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGATTACAATGCTCATTGGTGAGATTGCAAATTTCGTGGCTTACATGTTCGCACCGGCTGTTCTGGTTACTCCCCTCGGCGCTCTCAGCATAATTGTTAGTGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGCAACGGATGGGAGTGCTGGGCTGCGTGCTCTGTATAGTCGGATCAACAGTGATCATCCTTCATGCTCCTGAAGAGGAGACACCGAGCTCAGTGGAGCAGATTTGGCACCTGGCGACACAACCTGCCTTTCTTTGCTATGTGGCCTTTGCACTGGTGGTCTCACTGATCTTGATGGCGCATTGTGCTCCCCGCTATGGGCAGACCAACATAGCAGTGTATATAGGAATATGCTCTGTGATTGGATCTCTGACGGTAATGAGCATAAAGGCAGTTGGTATTGCAATCAAGCTTACAATTGAGGGCATAAACCAGGCTGGCTATTTCCAAACTTGGTTATTTGCAACTGTTTCAGCTATATGCATAATTATCCAGTTAATTTACCTGAACAAGGCACTGGACACTTTCAATACCGCAGTTGTGTCCCCCATCTATTATGCGATGTTTACATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAGGATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTTCTTACTGTGCTTTCTGGTACCGTTGTATTGCATTCTACAAGAGAATATGATCAAACTATTTCTCCAGACCTTTATACTCCTCTTCCCCCAATATACTGGCATATCCAAGGGAACGGTGAGACGGTGAAACAAAAAGAGGATGATTCACTCTCTGCTGACTTCATCACCGTGGTGCGACAAGATTACTTTGTCTAAAGAATAGAGACCGTCCTGAATGTTC-GGTAATCTCCTCAATATCGTCTTTCAGCAGTGACAAGACCAAATCAACTGCAAATTGTA-GGATTGTAGGATT-AGCTCGTGCATGATCATGCTGCATCCAAGCCAACACCCTCCAAAGGAGCATCGAAGCAGCCTGGCTTTTTTTTGCCCATTTGCACGAAACAAGGTCTTCTGCTTGTTTATCAAGGTGGTGTGACATGATCTGTTATGTGTATCTGTTCCTTTGATTCGAGGAGCAAGTTTATGAGGCTGCTCTTGCTAGTTTGACGGATGTTTTTTTGGCTTTTAGTTTTTGAGGTTTGTCTGTTGATGCATGTATATTGTACAGTCTAAATGAATGTAAGAAGCTAGATCTACCCTCTTTCGGTGAGGTTGAAACCATTCATGTAGCCTACTAGCGGTTGCTCACCATATTAGCGCTGCAGAGTGTGAAACTCTGCTGTTACAGTTCACATTGGCATAGCATTGAGAGTCTTGGTATTTACTTACAGTGCACATTAGCTCTTTAAGCTTTTCTGCTGCTGTCCTATTCAACTCCTGACATGTAATAATTACTGTTCCCGTGCAAATATTGCTGAAACT]
[+] EMBL AK121485 [ACACTTGTTTCCCCCCATTTCCCTCCAACCCCGGACACCCCGCACACGTACGAACAGGCCACAAATCCTCAAATATCGGACAGCGCAGGGATCGAACGCAGAGGAAATCCAAAATCCAAAATCCGATCCCCTCGAACCAAAGAATTCGAAGCGCGCAGGCGGGCACACGCCCCAAATGCGCCGGCGGACGACGCGCGCCGCCGCAGAAGCAGCACGGCGCCGATGAGTCGCGCCCCTCCGGACGCCGCCGGCGACCTCTTCGCCGCCAACCTCAAGGGCTCCCTCCTCGCCGTCGCCTCCTCCGCGTTCATCGGGGTCAGCTTCATTGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAGGTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGATTACAATGCTCATTGGTGAGATTGCAAATTTCGTGGCTTACATGTTCGCACCGGCTGTTCTGGTTACTCCCCTCGGCGCTCTCAGCATAATTGTTAGTGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGCAACGGATGGGAGTGCTGGGCTGCGTGCTCTGTATAGTCGGATCAACAGTGATCATCCTTCATGCTCCTGAAGAGGAGACACCGAGCTCAGTGGAGCAGATTTGGCACCTGGCGACACAACCTGCCTTTCTTTGCTATGTGGCCTTTGCACTGGTGGTCTCACTGATCTTGATGGCGCATTGTGCTCCCCGCTATGGGCAGACCAACATAGCAGTGTATATAGGAATATGCTCTGTGATTGGATCTCTGACGGTAATGAGCATAAAGGCAGTTGGTATTGCAATCAAGCTTACAATTGAGGGCATAAACCAGGCTGGCTATTTCCAAACTTGGTTATTTGCAACTGTTTCAGCTATATGCATAATTATCCAGTTAATTTACCTGAACAAGGCACTGGACACTTTCAATACCGCAGTTGTGTCCCCCATCTATTATGCGATGTTTACATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAGGATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTTCTTACTGTGCTTTCTGGTACCGTTGTATTGCATTCTACAAGAGAATATGATCAAACTATTTCTCCAGACCTTTATACTCCTCTTCCCCCAATATACTGGCATATCCAAGGGAACGGTGAGACGGTGAAACAAAAAGAGGATGATTCACTCTCTGCTGACTTCATCACCGTGGTGCGACAAGATTACTTTGTCTAAAGAATAGAGACCGTCCTGAATGTTC GGTAATCTCCTCAATATCGTCTTTCAGCAGTGACAAGACCAAATCAACTGCAAATTGTA GGATTGTAGGATT AGCTCGTGCATGATCATGCTGCATCCAAGCCAACACCCTCCAAAGGAGCATCGAAGCAGCCTGGCTTTTTTTTGCCCATTTGCACGAAACAAGGTCTTCTGCTTGTTTATCAAGGTGGTGTGACATGATCTGTTATGTGTATCTGTTCCTTTGATTCGAGGAGCAAGTTTATGAGGCTGCTCTTGCTAGTTTGACGGATGTTTTTTTGGCTTTTAGTTTTTGAGGTTTGTCTGTTGATGCATGTATATTGTACAGTCTAAATGAATGTAAGAAGCTAGATCTACCCTCTTTCGGTGAGGTTGAAACCATTCATGTAGCCTACTAGCGGTTGCTCACCATATTAGCGCTGCAGAGTGTGAAACTCTGCTGTTACAGTTCACATTGGCATAGCATTGAGAGTCTTGGTATTTACTTACAGTGCACATTAGCTCTTTAAGCTTTTCTGCTGCTGTCCTATTCAACTCCTGACATGTAATAATTACTGTTCCCGTGCAAATATTGCTGAAACT]
[+] EMBL CA767191 [ ACCTGCATTTCTTTGCTATGTGGCCTTTGCACTGGTGGTCTCACTGATCTTGATGGCGCATTGTGCTCCCCGCTATGGGCAGACCAACATAGCAGTGTATATAGGAATATGCTCTGTGATTGGATCTCTGACGGTAATGAGCATAAAGGCAGTTGGTATTGCAATCAAGCTTACAATTGAGGGCATAAACCAGGCTGGCTATTTCCAAACTTGGTTATTTGCAACTGTTTCAGCTATATGCATAATTATCCAGTTAATTTACCTGAACAAGGCACTGGACACTTTCAATACCGCAGTTGTGTCCCCCATCTATTATGCGATGTTTACATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAGGATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTTCTTACTGTGCTTTCTGGTACCGTTGTATTGCATTCTACAAGAGAATATGATCAAACTATTTCTCCAGACCTTTATACTCCTCTTCCCCCAATATACTGGCATATCCAAGGGAACGGTGAGACGGTGAAACAAAAAGAGGATGATTCACTCTCTGCTGACTTCATCACCGNGGTGCGACAAGATTACTTTGTCTAAAGAATAGAGACCGTCCTGAATGCTCGGGTAATCTCCTCAATATCGGCNTTCAGCAGNGACAAGACCAAATCAACTGCNAATTGTANGAATTGTAGGATTAACCTCGGGCATGATCATGCTGCATCCAAGCCAACACCCTCC AAGGAGCATCGNANCAGCCTGGC TTTTTTTGGCCATTTGCACGAAA AAGGNCTTTTGCTT ]
consensusID : consensus_12023#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1564 fasta sequence
[TCGCCGCCAACCTCAAGGGCTCGCTCCTCGCCGTCGCCTCCTCCGCCTTCATCGGGGTCAGCTTCATCGTCAAGAAGAAGGGGCTCCTCCGCGCCGGCGCCGCGGGCTCCCGAGCAGGTGTTGGAGGATATGGGTACCTCTTGGAGCCGCTCTGGTGGGTCGGGATGGTCACTATGCTTGTTGGGGAGATTGCCAACTTCATTGCTTACATGTTTGCACCTGCTGTCCTCGTCACGCCGCTAGGAGCACTCAGCATAATTGTGAGTGCTGTTCTGGCACATTTTACACTGAATGAGAAGTTACAGCGGGTGGGCGTGCTGGGATGTGTTCTTTGTATTGTTGGGTCGACGGTGATCATCCTCCATGCTCCCCAAGAGAGGACCCCAAGCTCAGTGGATGAGATTTGGCACTTGGCGATACAACCTGACTTCCTTTGCTATGCTACCGCTGCAGTAGCAGTATCTCTGTTCCTGATGATATATTGTGCTCCACGGTATGGGCAGATGAACATAATGGTGTATGTTGGAATTTGCTCAGTGATTGGATCATTGACGGTAATGAGCATTAAGGCTGTGGGCATTGCCATTAAGCTTACAATTGAGGGCATAAACCAGGCTGGCTACTTTCAGACGTGGCTGTTTGCAGTGATTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAAGGCGCTGGATACTTTCAATGCAGCAGTTGTTTCACCCATCTATTATGCCATGTTCACAACCCTCACTATTTTAGCAAGTGCGATAATGTTCAAGGACTGGTCTGGGCAGAGTGCAAGCAAAATTGCATCCGAGATTTGCGGATTTCTGACAGTTCTTGCTGGTACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGGGGATATAGGTAAACAAAAAGAGGACGACTCACTTCCCTGTGACATTATAACTGTCATGCGTCAAGACTACTTTGTCTAGAGATCTTCCAAGATGCTTGGCGTTTCATGCACATCTATTTGTCTGAGCGGAGATTGGTACAGTCACTAAGTCTGTCATTCATAATCCCCTCAAGAGTCAAGACCATCTTGCTACCAAGATCAAAGCAACTGCAAAATTTTGTAGACATGTTGTTACTGGATTGTGTATCATTTGTCGAATACTCATGACAAAGCTAAATGGCCATACGGTGACTTCTGAGCGAACAAACTTAGCCCCCTAGCCTGACAACTATGTGAAGATATTGTACAAAAATTGCCAGGAATGCAGTTCTTTTTTTAACCCTTTCATTTGAACTGAAGGCAAGTATACAAGGCTTGCTAATCGCTATCATTGACATGGCACTTTGTTCCCCTTTGTAGGGTCCGGAATGTAACTTGATGTACCTGAGGTTGTCTTGTATAGTCCATTGTGTGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGCCATGGCATTGAAACAAGTTGTATTCTCTCCTTTGTAGCAAAAAAAAGA]
[+] EMBL AK103484 [TCGCCGCCAACCTCAAGGGCTCGCTCCTCGCCGTCGCCTCCTCCGCCTTCATCGGGGTCAGCTTCATCGTCAAGAAGAAGGGGCTCCTCCGCGCCGGCGCCGCGGGCTCCCGAGCAGGTGTTGGAGGATATGGGTACCTCTTGGAGCCGCTCTGGTGGGTCGGGATGGTCACTATGCTTGTTGGGGAGATTGCCAACTTCATTGCTTACATGTTTGCACCTGCTGTCCTCGTCACGCCGCTAGGAGCACTCAGCATAATTGTGAGTGCTGTTCTGGCACATTTTACACTGAATGAGAAGTTACAGCGGGTGGGCGTGCTGGGATGTGTTCTTTGTATTGTTGGGTCGACGGTGATCATCCTCCATGCTCCCCAAGAGAGGACCCCAAGCTCAGTGGATGAGATTTGGCACTTGGCGATACAACCTGACTTCCTTTGCTATGCTACCGCTGCAGTAGCAGTATCTCTGTTCCTGATGATATATTGTGCTCCACGGTATGGGCAGATGAACATAATGGTGTATGTTGGAATTTGCTCAGTGATTGGATCATTGACGGTAATGAGCATTAAGGCTGTGGGCATTGCCATTAAGCTTACAATTGAGGGCATAAACCAGGCTGGCTACTTTCAGACGTGGCTGTTTGCAGTGATTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAAGGCGCTGGATACTTTCAATGCAGCAGTTGTTTCACCCATCTATTATGCCATGTTCACAACCCTCACTATTTTAGCAAGTGCGATAATGTTCAAGGACTGGTCTGGGCAGAGTGCAAGCAAAATTGCATCCGAGATTTGCGGATTTCTGACAGTTCTTGCTGGTACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGGGGATATAGGTAAACAAAAAGAGGACGACTCACTTCCCTGTGACATTATAACTGTCATGCGTCAAGACTACTTTGTCTAGAGATCTTCCAAGATGCTTGGCGTTTCATGCACATCTATTTGTCTGAGCGGAGATTGGTACAGTCACTAAGTCTGTCATTCATAATCCCCTCAAGAGTCAAGACCATCTTGCTACCAAGATCAAAGCAACTGCAAAATTTTGTAGACATGTTGTTACTGGATTGTGTATCATTTGTCGAATACTCATGACAAAGCTAAATGGCCATACGGTGACTTCTGAGCGAACAAACTCAGCCCCCTAGCCTGACAACTATGTGAAGATATTGTACAAAAATTGCCAGGAATGCAGTTCTTTTTTTAACCCTTTCATTTGAACTGAAGGCAAGTATACAAGGCTTGCTAATCGCTATCATTGACATGGCACTTTGTTCCCCTTTGTAGGGTCCGGAATGTAACTTGATGTACCTGAG ]
[+] EMBL CB657880 [TCGCCGCCAACCTCAAGGGCTCGCTCCTCGCCGTCGCCTCCTCCGCCTTCATCGGGGTCAGCTTCATCGTCAAGAAGAAGGGGCTCCTCCGCGCCGGCGCCGCGGGCTCCCGAGCAGGTGTTGGAGGATATGGGTACCTCTTGGAGCCGCTCTGGTGGGTCCGGATGGTCACTATGCTTGTTGGGGAGATTGCCCACTTCATTGCTTACATGTTTGCACCTGCTGTCCTCGTCACGCCGCTAGGAGCACTCAGCATAATTGTGAGTGCTGTTCTGGCACATTTTACACTGAATGAGAACTTACAGCGGGTGGGCGTGCTGGGATGTGTTCTTTGTATTGTTGGGTCGACGGTGATCATCCTCCATGCTCCCCAAGAGAGGACCCCAAGCTCATTGGATGAGATTTGGCACTTGTCCATACAACCTGACTTCCTTTGCTATGCTACCGCTGCAGTAGCAGTATCTCTGTTCCTGATGATATATTGTGCTCCACGGGATGGGCAGATGA ]
[+] EMBL CB672423 [TCGCCGCCAACCTCAAGGGCTCGCTCCTCGCCGTCGCCTCCTCCGCCTTCATCGGGGTCAGCTTCATCGTCAAGAAGAAGGGGCTCCTCCGCGCCGGCGCCGCGGGCTCCCGAGCAGGTGTTGGAGGATATGGGTACCTCTTGGAGCCGCTCTGGTGGGTCGGGATGGTCACTATGCTTGTTGGGGAGATTGCCAACTTCATTGCTTACATGTTTGCACCTGCTGTCCTCGTCACGCCGCTAGGAGCACTCAGCATAATTGTGAGTGCTGTTCTGGCACATTTTACACTGAATGAGAAGTTACAGCGGGTGGGCGTGCTGGGATGTGTTCTTTGTATTGATGGGTCGACGGAGATCATCCTCCATGCTCCCCAAGAGAGGACCCCAAGCTCAGTGGATGAGATTTGGCACTTGGCGATACAACCTGACTTCCTTTGCTAT ]
[-] EMBL CB657881 [ ATTAAGGCTGTGGGCATTGCCATTAAGCTTACAATTGAGGGCATAAACCAGGCTGGCTACTTTCAGACGTGGCTGTTTGCAGTGATTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAAGGCGCTGGATACTTTCAATGCAGCAGTTGTTTCACCCATCTATTATGCCATGTTCACAACCCTCACTATTTTAGCAAGTGCGATAATGTTCAAGGACTGGTCTGGGCAGAGTGCAAGCAAAATTGCATCCGAGATTTGCGGATTTCTGACAGTTCTTGCTGGTACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGGGGATATAGGTAAACAAAAAGAGGACGACTCACTTCCCTGTGACATTATAACTGTCATGCGTCAAGACTACTTTGTCTAGAGATCTTCCAAGATGCTTGGCGTTTCATGCACATCTATTTGTCTGAGCGGAGATTGGTACAGTCACTAAGTCTGTCATTCATAATCCCCTCAAGAGTCAAGACCATCTTGCTACCAAGATCAAAGCAACTGCAAAATTTTGTAGACATGTTGTTACTGGATTGTGTATCATTTGTCGAATACTCATGACAAAGCTAAATGGCCATACGGTGACTTCTGAGCGAACAAACTTAGCCCCCTAGCCTGACAACTATGTGAAGATATTGTACAAAAATTGCCAGGAATGCAGTTCTTTTTTAAAaaaaaaaga ]
[-] EMBL CB672424 [ TTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAAGGCGCTGGATACTTTCAATGCAGCAGTTGTTTCACCCATCTATTATGCCATGTTCACAACCCTCACTATTTTAGCAAGTGCGATAATGTTCAAGGACTGGTCTGGGCAGAGTGCAAGCAAAATTGCATCCGAGATTTGCGGATTTCTGACAGTTCTTGCTGGTACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGGGGATATAGGTAAACAAAAAGAGGACGACTCACTTCCCTGTGACATTATAACTGTCATGCGTCAAGACTACTTTGTTTAGAGATCTTCCAAGATGCTTGGCGTTTCATGCACATCTATTTGTTTGAGCGGAGATTGGTACAGTCACTAAGTCTGTCATTCATAATCCCCTCAAGAGTCAAGACCATCTTGCTACCAAGATCAAAGCAACTGCAAAATTTTGTAGACATGTTGTTACTGGATTGTGTATCATTTGTCGAATACTCATGACAAAGCTAAATGGCCATACGGTGACTTCTGAGCGAACAAACTTAGCCCCCTAGCCTGACAACTATGTGAAGATATTGTACAAAAATTGCCAGGAATGCAGTTCTTTTTTTAACCCTTTCATTTGAACTGAAGGCAAAAGTACAAGGCTTGCTAATCGCTATCATgaaaaacat ]
[-] EMBL CB658943 [ GCAAAATTGCATCCGAGATTTGCGGATTTCTGACAGTTCTTGCTGGTACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGGGGATATAGGTAAACAAAAAGAGGACGACTCACTTCCCTGTGACATTATAACTGTCATGCGTCAAGACTACTTTGTCTAGAGATCTTCCAAGATGCTTGGCGTTTCATGCACATCTATTTGTCTGAGCGGAGATTGGTACAGTCACTAAGTCTGTCATTCATAATCCCCTCAAGAGTCAAGACCATCTTGCTACCAAGATCAAAGCAACTGCAAAATTTTGTAGACATGTTGTTACTGGATTGTGTATCATTTGTCGAATACTCATGACAAAGCTAAATGGCCATACGGTGACTTCTGAGCGAACAAACTTAGCCCCCTAGCCTGACAACTATGTGAAGATATTGTACAAAAATTGCCAGGAATGCAGTTCTTTTTTTAACCCTTTCATTTGAACTGAAGGCAAGTATACAAGGCTTGCTAATCGCTATCATTGACGTGGCACTTTGTTCCCCTTTGTAGGGTCCGGAATGTAACTTGATGTACCTGAGGTTGTCTTGTATAGTCCATTGTGTGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGCCATGGCATTGAAACAAGTTGTATTCTCTCCTTTGTAGCAAAAAAAAGA]
consensusID : consensus_12023#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[GGCACTGACACTAAGCTACCAAATGAGGGCATTAAACCCGGGCGGGCTACTTTCAACCGTGGCTGTTTCCAGTGGTTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAGCGCGCGGATACTTTCAATACACCAGTTGTTTCACCCATTTATTATGCCATGTTCACAACCCTCACTATTTTAGCAAGTGCGATAATGTTCAAGGACTGGTCTGGGCAGAGTGCAAGCAAAATTGCATCCGAGATTTGCGGATTTCTGACAGTTCTTGCTGGTACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGGGGATATAGGTAAACAAAAAGAGGACGACTCACTTCCCTGTGACATTATAACTGTCATGCGTCAAGACTACTTTGTCTAGAGATCTTCCAAGATGCTTGGCGTTTCATGCACATCTATTTGTTTGAGCGGAGATTGGTACAGTCACTAAGTCTGTCATTCATAATCCCCTCAAGAGTCAAGACCATCTTGCTACCAAGATCAAAGCAACTGCAAAATTTTGTAGACATGTTACTGGATTGTGTATCATTTGTCGAATACTCATGACAAAGCTAAATGGCCATACGGTGACTTCTGAGCGAACAAAAAAAAAAAAA]
[-] EMBL CA763477 [GGCACTGACACTAAGCTACCAAATGAGGGCATTAAACCCGGGCGGGCTACTTTCAACCGTGGCTGTTTCCAGTGGTTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAGCGCGCGGATACTTTCAATACACCAGTTGTTTCACCCATTTATTATGCCATGTTCACAACCCTCACTATTTTAGCAAGTGCGATAATGTTCAAGGACTGGTCTGGGCAGAGTGCAAGCAAAATTGCATCCGAGATTTGCGGATTTCTGACAGTTCTTGCTGGTACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGGGGATATAGGTAAACAAAAAGAGGACGACTCACTTCCCTGTGACATTATAACTGTCATGCGTCAAGACTACTTTGTCTAGAGATCTTCCAAGATGCTTGGCGTTTCATGCACATCTATTTGTTTGAGCGGAGATTGGTACAGTCACTAAGTCTGTCATTCATAATCCCCTCAAGAGTCAAGACCATCTTGCTACCAAGATCAAAGCAACTGCAAAATTTTGTAGACATGTTACTGGATTGTGTATCATTTGTCGAATACTCATGACAAAGCTAAATGGCCATACGGTGACTTCTGAGCGAACAAAAAAAAAAAAA]
consensusID : consensus_12023#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[AGGACGAGACAAGGGGGTCCCCCATCTATTATGCGATGTTTACATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAGGATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTTCTTACTGTGCTTTCTGGTACCGTTGTATTGCATTCTACAAGAGAATATGATCAAACTATTTCTCCAGACCTTTATACTCCTCTTCCCCCAATATACTGGCATATCCAAGGGAACGGTGAGACGGTGAAACAAAAAGAGGATGATTCACTCTCTGCTGACTTCATCACCGTGGTGCGACAAGATTACTTTGTCTAAAGAATAGAGACCGTCCTGAATGCTCGGTAATCTCCTCAATATCGTCTTTCAGCAGTGACAAGACCAAATCAACTGCAAATTGTAGGATTGTAGGATTAGCTCGTGCATGATCATGCTGCATCCAAGCCAACACCCTCCAAAGGAGCATCGAAGCAGCCTGGCTTTTTTTTGCCCATTTGCACGAAACAAGGTCTTCTGCTTGTTTATCAAGGTGGTGTGACATGATCTGTTATGTGCGTCTGTTCCTTTGATTCGAGGAGCAAGTTTATGAGGCTGCTCTTGCTAAAAAAAAAAAAA]
[-] EMBL CA760243 [AGGACGAGACAAGGGGGTCCCCCATCTATTATGCGATGTTTACATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAGGATTGGTCTGGACAGAGTATAAGCAGTATTGCTTCTGAGATCTGTGGATTTCTTACTGTGCTTTCTGGTACCGTTGTATTGCATTCTACAAGAGAATATGATCAAACTATTTCTCCAGACCTTTATACTCCTCTTCCCCCAATATACTGGCATATCCAAGGGAACGGTGAGACGGTGAAACAAAAAGAGGATGATTCACTCTCTGCTGACTTCATCACCGTGGTGCGACAAGATTACTTTGTCTAAAGAATAGAGACCGTCCTGAATGCTCGGTAATCTCCTCAATATCGTCTTTCAGCAGTGACAAGACCAAATCAACTGCAAATTGTAGGATTGTAGGATTAGCTCGTGCATGATCATGCTGCATCCAAGCCAACACCCTCCAAAGGAGCATCGAAGCAGCCTGGCTTTTTTTTGCCCATTTGCACGAAACAAGGTCTTCTGCTTGTTTATCAAGGTGGTGTGACATGATCTGTTATGTGCGTCTGTTCCTTTGATTCGAGGAGCAAGTTTATGAGGCTGCTCTTGCTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12023#0 ACACTTGTTTCCCCCCATTTCCCTCCAACCCCGGACACCCCGCACACGTACGAACAGGCC 60
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 ------------------------------------------------------------
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 ACAAATCCTCAAATATCGGACAGCGCAGGGATCGAACGCAGAGGAAATCCAAAATCCAAA 120
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 ------------------------------------------------------------
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 ATCCGATCCCCTCGAACCAAAGAATTCGAAGCGCGCAGGCGGGCACACGCCCCAAATGCG 180
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 ------------------------------------------------------------
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 CCGGCGGACGACGCGCGCCGCCGCAGAAGCAGCACGGCGCCGATGAGTCGCGCCCCTCCG 240
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 ------------------------------------------------------------
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 GACGCCGCCGGCGACCTCTTCGCCGCCAACCTCAAGGGCTCCCTCCTCGCCGTCGCCTCC 300
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 -------------------TCGCCGCCAACCTCAAGGGCTCGCTCCTCGCCGTCGCCTCC 41
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 TCCGCGTTCATCGGGGTCAGCTTCATTGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCC 360
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 TCCGCCTTCATCGGGGTCAGCTTCATCGTCAAGAAGAAGGGGCTCCTCCGCGCCGGCGCC 101
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 GCCGGCCCCCGCGCAGGTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTT 420
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 GCGGGCTCCCGAGCAGGTGTTGGAGGATATGGGTACCTCTTGGAGCCGCTCTGGTGGGTC 161
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 GGAATGATTACAATGCTCATTGGTGAGATTGCAAATTTCGTGGCTTACATGTTCGCACCG 480
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 GGGATGGTCACTATGCTTGTTGGGGAGATTGCCAACTTCATTGCTTACATGTTTGCACCT 221
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 GCTGTTCTGGTTACTCCCCTCGGCGCTCTCAGCATAATTGTTAGTGCTGTTCTAGCCCAT 540
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 GCTGTCCTCGTCACGCCGCTAGGAGCACTCAGCATAATTGTGAGTGCTGTTCTGGCACAT 281
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 TTCATCCTGAATGAGAAGCTGCAACGGATGGGAGTGCTGGGCTGCGTGCTCTGTATAGTC 600
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 TTTACACTGAATGAGAAGTTACAGCGGGTGGGCGTGCTGGGATGTGTTCTTTGTATTGTT 341
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 GGATCAACAGTGATCATCCTTCATGCTCCTGAAGAGGAGACACCGAGCTCAGTGGAGCAG 660
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 GGGTCGACGGTGATCATCCTCCATGCTCCCCAAGAGAGGACCCCAAGCTCAGTGGATGAG 401
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 ATTTGGCACCTGGCGACACAACCTGCCTTTCTTTGCTATGTGGCCTTTGCACTGGTGGTC 720
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 ATTTGGCACTTGGCGATACAACCTGACTTCCTTTGCTATGCTACCGCTGCAGTAGCAGTA 461
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 TCACTGATCTTGATGGCGCATTGTGCTCCCCGCTATGGGCAGACCAACATAGCAGTGTAT 780
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 TCTCTGTTCCTGATGATATATTGTGCTCCACGGTATGGGCAGATGAACATAATGGTGTAT 521
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 ATAGGAATATGCTCTGTGATTGGATCTCTGACGGTAATGAGCATAAAGGCAGTTGGTATT 840
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 GTTGGAATTTGCTCAGTGATTGGATCATTGACGGTAATGAGCATTAAGGCTGTGGGCATT 581
consensus_12023#2 ------------------------------------------------------GGCACT 6
consensus_12023#0 GCAATCAAGCTTACAATTGAGGGCATAAA--CCAGGCTGGCTATTTCCAAACTTGGTTAT 898
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 GCCATTAAGCTTACAATTGAGGGCATAAA--CCAGGCTGGCTACTTTCAGACGTGGCTGT 639
consensus_12023#2 GACACTAAGCTACCAAATGAGGGCATTAAACCCGGGCGGGCTACTTTCAACCGTGGCTGT 66
consensus_12023#0 TTGCAACTGTTTCAGCTATATGCATAATTATCCAGTTAATTTACCTGAACAAGGCACTGG 958
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 TTGCAGTGATTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAAGGCGCTGG 699
consensus_12023#2 TTCCAGTGGTTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAGCGCGC-GG 125
consensus_12023#0 ACACTTTCAATACCGCAGTTGTGTCCCCCATCTATTATGCGATGTTTACATCCCTCACTA 1018
consensus_12023#3 ------AGGACGAGACAAGGGGGTCCCCCATCTATTATGCGATGTTTACATCCCTCACTA 54
consensus_12023#1 ATACTTTCAATGCAGCAGTTGTTTCACCCATCTATTATGCCATGTTCACAACCCTCACTA 759
consensus_12023#2 ATACTTTCAATACACCAGTTGTTTCACCCATTTATTATGCCATGTTCACAACCCTCACTA 185
* ** * ** ***** ******** ***** *** *********
consensus_12023#0 TTTTAGCAAGTGCCATAATGTTCAAGGATTGGTCTGGACAGAGTATAAGCAGTATTGCTT 1078
consensus_12023#3 TTTTAGCAAGTGCCATAATGTTCAAGGATTGGTCTGGACAGAGTATAAGCAGTATTGCTT 114
consensus_12023#1 TTTTAGCAAGTGCGATAATGTTCAAGGACTGGTCTGGGCAGAGTGCAAGCAAAATTGCAT 819
consensus_12023#2 TTTTAGCAAGTGCGATAATGTTCAAGGACTGGTCTGGGCAGAGTGCAAGCAAAATTGCAT 245
************* ************** ******** ****** ***** ***** *
consensus_12023#0 CTGAGATCTGTGGATTTCTTACTGTGCTTTCTGGTACCGTTGTATTGCATTCTACAAGAG 1138
consensus_12023#3 CTGAGATCTGTGGATTTCTTACTGTGCTTTCTGGTACCGTTGTATTGCATTCTACAAGAG 174
consensus_12023#1 CCGAGATTTGCGGATTTCTGACAGTTCTTGCTGGTACTCTTGTGCTACACTCTACTAGAG 879
consensus_12023#2 CCGAGATTTGCGGATTTCTGACAGTTCTTGCTGGTACTCTTGTGCTACACTCTACTAGAG 305
* ***** ** ******** ** ** *** ******* **** * ** ***** ****
consensus_12023#0 AATATGATCAAACTATTTCTCCAGACCTTTATACTCCTCTTCCCCCAA---TATACTGGC 1195
consensus_12023#3 AATATGATCAAACTATTTCTCCAGACCTTTATACTCCTCTTCCCCCAA---TATACTGGC 231
consensus_12023#1 AACCTGATCAAACTCTTTCGGCAGACCTGTATGCACCTCTTCCTCCAAAGATATACTGGC 939
consensus_12023#2 AACCTGATCAAACTCTTTCGGCAGACCTGTATGCACCTCTTCCTCCAAAGATATACTGGC 365
** ********** **** ******* *** * ******** **** *********
consensus_12023#0 ATATCCAAGGGAACGGTGAGACGGTGAAACAAAAAGAGGATGATTCACTCTCTGCTGACT 1255
consensus_12023#3 ATATCCAAGGGAACGGTGAGACGGTGAAACAAAAAGAGGATGATTCACTCTCTGCTGACT 291
consensus_12023#1 ACATCCAAGGAAACGGGGATATAGGTAAACAAAAAGAGGACGACTCACTTCCCTGTGACA 999
consensus_12023#2 ACATCCAAGGAAACGGGGATATAGGTAAACAAAAAGAGGACGACTCACTTCCCTGTGACA 425
* ******** ***** ** * * ************** ** ***** * ****
consensus_12023#0 TCATCACCGTGGTGCGACAAGATTACTTTGTCTAAAGAATAGAGACCGTCCTGAATGTTC 1315
consensus_12023#3 TCATCACCGTGGTGCGACAAGATTACTTTGTCTAAAGAATAGAGACCGTCCTGAATGCTC 351
consensus_12023#1 TTATAACTGTCATGCGTCAAGACTACTTTGTCT-------AGAGATCTTCCAAGATGCTT 1052
consensus_12023#2 TTATAACTGTCATGCGTCAAGACTACTTTGTCT-------AGAGATCTTCCAAGATGCTT 478
* ** ** ** **** ***** ********** ***** * *** *** *
consensus_12023#0 GGTAATCTCCTCAATATCGTCTTTCAGCAGTGACAAGACCAAATCAACTGCAAATTGTAG 1375
consensus_12023#3 GGTAATCTCCTCAATATCGTCTTTCAGCAGTGACAAGACCAAATCAACTGCAAATTGTAG 411
consensus_12023#1 GGCG-TTTCATGCACATCTATTTGTCTGAGCGG--AGATTGGTACAGTCACTAAGTCTGT 1109
consensus_12023#2 GGCG-TTTCATGCACATCTATTTGTTTGAGCGG--AGATTGGTACAGTCACTAAGTCTGT 535
** * ** * * *** ** ** * *** ** * ** * *
consensus_12023#0 GATTGTAGGATTAGCTCGTG---CATGATCATGCTGCATCCAAGCCAACACCCTCCAAAG 1432
consensus_12023#3 GATTGTAGGATTAGCTCGTG---CATGATCATGCTGCATCCAAGCCAACACCCTCCAAAG 468
consensus_12023#1 CATT-CATAATCCCCTCAAGAGTCAAGACCATCTTGCTACCAAGATCAAAGCAACTGCAA 1168
consensus_12023#2 CATT-CATAATCCCCTCAAGAGTCAAGACCATCTTGCTACCAAGATCAAAGCAACTGCAA 594
*** * ** *** * ** ** *** *** ***** * * * * *
consensus_12023#0 GAGCATCGAAGCAGCCTGGCTTTTTTTTGCCCATTTGCACGAAACAAGGTCTTCTGCTTG 1492
consensus_12023#3 GAGCATCGAAGCAGCCTGGCTTTTTTTTGCCCATTTGCACGAAACAAGGTCTTCTGCTTG 528
consensus_12023#1 AATTTTGTAGACATGTTGTTACTGGATTGTGTAT---CATTTGTCGAATACTCATG---A 1222
consensus_12023#2 AATTTTGTAGACATGTT---ACTGGATTGTGTAT---CATTTGTCGAATACTCATG---A 645
* * * ** * * *** ** ** * * ** **
consensus_12023#0 TTTATCAAGGTGGTGTGACATGATCTGTTATGTGTATCTGTTCCTTTGATTCGAGGAGCA 1552
consensus_12023#3 TTTATCAAGGTGGTGTGACATGATCTGTTATGTGCGTCTGTTCCTTTGATTCGAGGAGCA 588
consensus_12023#1 CAAAGCTAAATGGCCATACGGTGACTTCTGAGCGAACAAACTTAGCCCCCTAGCCTGACA 1282
consensus_12023#2 CAAAGCTAAATGGCCATACGGTGACTTCTGAGCGAACAAAAAAAAAAAAA---------- 695
* * * *** ** ** * * *
consensus_12023#0 AGTTTATGAGGCTGCTCTTGCTAGTTTGACGGATGTTTTTTTGGCTTTTAGTTTTTGAGG 1612
consensus_12023#3 AGTTTATGAGGCTGCTCTTGCTAAAAAAAAAAAAA------------------------- 623
consensus_12023#1 ACTATGTGAAGATATTGTACAAAAATTGCCAGGAATGCAGTTCTTTTTTTAACCCTTTCA 1342
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 TTTGTCTGTTGATGCATGTATATTGTACAGTCTAAATGAATGTAAGAAGCTAGATCTACC 1672
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 TTTGAAC-TGAAGGCAAGTATACAAGGCTTGCTAATCGCTATCATTGACATGGCACTTTG 1401
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 CTCTTTCGGTGAGGTTGAAACCATTCATGTAGCCTACTAGCGGTTGCTCACCATATTAGC 1732
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 TTCCCCTTTGTAGGGTCCGGAATGTAACTTGATGTACCTGAGGTTGTCTTGTATAGTCCA 1461
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 GCTGCAGAGTGTGAAACTCTGCTGTTACAGTTCACATTGGCATAGCATTGAGAGTCTTGG 1792
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 TTGTGTGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGCCATGG 1521
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 TATTTACTTACAGTGCACATTAGCTCTTTAAGCTTTTCTGCTGCTGTCCTATTCAACTCC 1852
consensus_12023#3 ------------------------------------------------------------
consensus_12023#1 CATTGAAACAAGTTGTATTCTCTCCTTTGTAGCAAAAAAAAGA----------------- 1564
consensus_12023#2 ------------------------------------------------------------
consensus_12023#0 TGACATGTAATAATTACTGTTCCCGTGCAAATATTGCTGAAACT 1896
consensus_12023#3 --------------------------------------------
consensus_12023#1 --------------------------------------------
consensus_12023#2 --------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||