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Oryza sativa
cluster # 12024 cluster # 12024       Sequences # 10       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12024#0 length = 2488 sequences # 8  
 consensus_12024#1 length = 339 sequences # 1  
consensus_12024#2 length = 290 sequences # 1  
consensusID : consensus_12024#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2488
fasta sequence 
                              [AGAGGCACCAGACTTGCTCTCTACATGGAAAAAAATCCCCAATCCCCAACTTGCTGTCTACAGAAAAAAGATCCCCAATCCATTCGTCGGTGATTTAGAGCAGCGATGGAGGGAGCAAACGGCGAAGATGTGCCGAGGAGGACATGTCGGAGGGCATCGGGGATCGGCGTCGTCGAGCATCGCCCATGATTGGGCGTCGGATGGAGCGGCCGGCGTCGAGGTCAGCCCACAGTGGAGCAGCGGAAGGTGAGGACGCCCTGCTCTGCCACTGCAGCTCGGGACTCAGGCAGGCGGGGAAAGGAGAGGAGGACCTGTCGCGGCGATGCAAATAGCTGCGCATGCAGGCGGCCAAAGGCGACGATTGAGCAAGCGAGCGATGGCGTCCTCGGCCTTGGGGAGCAGCAACAGCAGCGACGGCGTCGGCGAGCAGCAGGTGCAGTGTCCTCGTCCTCCACGAGCAACAGGCAGCCGGAGCGGCGGCGGCGTCATGTCCTTTGCAATCAGCGGACAGTGGCGTCGGCAAGCAGCGTAGCAGGTGCGGCGGCCTCGACCTTGACGAGCAGTTGGAGCAGCTCTGTGCGGGAGGTGGAGATGGAGATGGTGGGTGGATCGGAGGGGGGAGCCGCTCCTGTCGGCCACCAGCTCCACCCCGTCCTCCTCTCCTCATTGCGGCGGCGACGGCCTCCTCCTCCATCCCCTCTTCCGGTGTTGGGCGCAGGAGTAGGCGGCAGTTGGAGCGGGCGCTGCGGCGATGGACGCGACGGCGACGAGCACGGTCGCGGGTGGCGGCTTCACAGGTACAACCATTTCAGCCAGAAGAGCACACATGGATGGGATCTGTCTAGTAAACAAAAAAAGGAGACTGACGCTCAGGCCATGTGTTGAAGTAGATCACAGCAGCAAGCGGGTAAGATCGCGATGTGCTAAGTTTGAGTCTCTCCCAGAGGACATAGTGTCAAGGATTATTTCACAACTAACATTGAAGGAAGCTGTTGTAATGAGCTCGACATCGACCAAGTTGAGAAGAGCTTGGATTTACCATCCTAATCTTTACTTGGACACTTCAATAGTGTTTGGCAGTTCTGATCGCCAGAAGCGAGTGCCGAGCACTGAGACGTTTATTGACACAGTCAATTTTATCTTGAGGACGCACAGTGGTTTAGGAGTGAACAAACTTGCTGTTATGTTTGAGTTGAGGAAGGAGCATGCACATGACATTGATGGATGGGTTTCCTTTGCTGTTACATCCAAGGCAAGGGTTGTCACCCTCAACTTTTCTCCATATCATGGATCGCATGATCGCAGTTACAACTTCCCATGTCATCTTTTCAACGGCAAAAGTGGATCTCACCTTCAAGTTCTTCAACTTGATACCGTTACTTTGGGTCCAAGTCCTCCTGGCTTTTGTGGCTTTGCTAACCTTACAATGCTTACTTTGGAGAATGTGCTTGTATTGGGCGATTTGCAGTTCTTACTGAAATGCCCTGCCCTTGAATGGTTGACTATCCGAATGTGCTCCCAGTTACATAATTTGTATGCTCCTGAACCATTGCCGCGGTTGACATTTTTGTGTGTACAAGATTGTGCAATTGACAAGATTGATGTTCATGCCCCTAATCTCACCACATTTAAGTATAGAGGTCGTTTTAAAGTTATTCTTGCCCCTTCGGGAATGCTTGAAGCTTAAGACTGCAAGCATTGTATCCCCCATTGAGGACAACCTTTACTATATTTTCACTGAGCTTCCAAATGGGTTACCTCATGTTGAGAGACTACACGTGAATGTTTTTGTCAAGACTCAGATACCTGGATTTACTCAGGCCCCTTACAAATTTATCAATTTAAGGCATCTGACCATGAGGATAACCTATGAAATTGCTAAACGCTTTGGTAGAAATGCAGTTCTGCAACTAGCATATTTTTCGGAAGCTGCTCCGTTTTTGGTGGACCTTCATTTGGATATGCTGTGTTTAGATTTTTACGAGTCCCGTCCTGCAAGAGACGTGATTATGAATCGCCCTCACTACAGTCTCAAGAGAGCTTGCATAACCGGATTCAATGGCAATGGAGGGCAAGTTGCACTAGTAAAATTTATCCTCAAGAATGCAGTAAAATTGGAGGAAATGGTTATAGATCCAAAAGGTAGAATAACGAACCAAATGATGGGAGAGCACAAAGGCCGTAGAATGATTAAGGAAAAACTTGTTCCAAAATACAAGAATGGCCTACTTGTAATTCTATAACTTCTCAAGTTATGCATTCTGTTTTTCTCAATGAATTTAAGTTATGTCTGGGCAGTGATATATTTACTTGCCCTTTAACCC-TTTTTTTTTTTCTGAAGCAACGATAATAAATATTTTATGCGATGGAGCATTTGCTAAGTTAGAGTACTAGTAGAGTAGTGCAAATGTACTAGTATTGTGATTGTGTTTTTCTTTTTGCAATACTGAAGGGAAGGGTCATCTTGGTCTGAAAAAAAAAAAAAGAG]

[+] EMBL AK068559             [AGAGGCACCAGACTTGCTCTCTACATGGAAAAAAATCCCCAATCCCCAACTTGCTGTCTACAGAAAAAAGATCCCCAATCCATTCGTCGGTGATTTAGAGCAGCGATGGAGGGAGCAAACGGCGAAGATGTGCCGAGGAGGACATGTCGGAGGGCATCGGGGATCGGCGTCGTCGAGCATCGCCCATGATTGGGCGTCGGATGGAGCGGCCGGCGTCGAGGTCAGCCCACAGTGGAGCAGCGGAAGGTGAGGACGCCCTGCTCTGCCACTGCAGCTCGGGACTCAGGCAGGCGGGGAAAGGAGAGGAGGACCTGTCGCGGCGATGCAAATAGCTGCGCATGCAGGCGGCCAAAGGCGACGATTGAGCAAGCGAGCGATGGCGTCCTCGGCCTTGGGGAGCAGCAACAGCAGCGACGGCGTCGGCGAGCAGCAGGTGCAGTGTCCTCGTCCTCCACGAGCAACAGGCAGCCGGAGCGGCGGCGGCGTCATGTCCTTTGCAATCAGCGGACAGTGGCGTCGGCAAGCAGCGTAGCAGGTGCGGCGGCCTCGACCTTGACGAGCAGTTGGAGCAGCTCTGTGCGGGAGGTGGAGATGGAGATGGTGGGTGGATCGGAGGGGGGAGCCGCTCCTGTCGGCCACCAGCTCCACCCCGTCCTCCTCTCCTCATTGCGGCGGCGACGGCCTCCTCCTCCATCCCCTCTTCCGGTGTTGGGCGCAGGAGTAGGCGGCAGTTGGAGCGGGCGCTGCGGCGATGGACGCGACGGCGACGAGCACGGTCGCGGGTGGCGGCTTCACAGGTACAACCATTTCAGCCAGAAGAGCACACATGGATGGGATCTGTCTAGTAAACAAAAAAAGGAGACTGACGCTCAGGCCATGTGTTGAAGTAGATCACAGCAGCAAGCGGGTAAGATCGCGATGTGCTAAGTTTGAGTCTCTCCCAGAGGACATAGTGTCAAGGATTATTTCACAACTAACATTGAAGGAAGCTGTTGTAATGAGCTCGACATCGACCAAGTTGAGAAGAGCTTGGATTTACCATCCTAATCTTTACTTGGACACTTCAATAGTGTTTGGCAGTTCTGATCGCCAGAAGCGAGTGCCGAGCACTGAGACGTTTATTGACACAGTCAATTTTATCTTGAGGACGCACAGTGGTTTAGGAGTGAACAAACTTGCTGTTATGTTTGAGTTGAGGAAGGAGCATGCACATGACATTGATGGATGGGTTTCCTTTGCTGTTACATCCAAGGCAAGGGTTGTCACCCTCAACTTTTCTCCATATCATGGATCGCATGATCGCAGTTACAACTTCCCATGTCATCTTTTCAACGGCAAAAGTGGATCTCACCTTCAAGTTCTTCAACTTGATACCGTTACTTTGGGTCCAAGTCCTCCTGGCTTTTGTGGCTTTGCTAACCTTACAATGCTTACTTTGGAGAATGTGCTTGTATTGGGCGATTTGCAGTTCTTACTGAAATGCCCTGCCCTTGAATGGTTGACTATCCGAATGTGCTCCCAGTTACATAATTTGTATGCTCCTGAACCATTGCCGCGGTTGACATTTTTGTGTGTACAAGATTGTGCAATTGACAAGATTGATGTTCATGCCCCTAATCTCACCACATTTAAGTATAGAGGTCGTTTTAAAGTTATTCTTGCCCCTTCGGGAATGCTTGAAGCTTAAGACTGCAAGCATTGTATCCCCCATTGAGGACAACCTTTACTATATTTTCACTGAGCTTCCAAATGGGTTACCTCATGTTGAGAGACTACACGTGAATGTTTTTGTCAAGACTCAGATACCTGGATTTACTCAGGCCCCTTACAAATTTATCAATTTAAGGCATCTGACCATGAGGATAACCTATGAAATTGCTAAACGCTTTGGTAGAAATGCAGTTCTGCAACTAGCATATTTTTCGGAAGCTGCTCCGTTTTTGGTGGACCTTCATTTGGATATGCTGTGTTTAGATTTTTACGAGTCCCGTCCTGCAAGAGACGTGATTATGAATCGCCCTCACTACAGTCTCAAGAGAGCTTGCATAACCGGATTCAATGGCAATGGAGGGCAAGTTGCACTAGTAAAATTTATCCTCAAGAATGCAGTAAAATTGGAGGAAATGGTTATAGATCCAAAAGGTAGAATAACGAACCAAATGATGGGAGAGCACAAAGGCCGTAGAATGATTAAGGAAAAACTTGTTCCAAAATACAAGAATGGCCTACTTGTAATTCTATAACTTCTCAAGTTATGCATTCTGTTTTTCTCAATGAATTTAAGTTATGTCTGGGCAGTGATATATTTACTTGCCCTTTAACCC TTTTTTTTTTTCTGAAGCAACGATAATAAATATTTTATGCGATGGAGCATTTGCTAAGTTAGAGTACTAGTAGAGTAGTGCAAATGTACTAGTATTGTGATTGTGTTTTTCTTTTTGCAATACTGAAGGGAAGGGTCATCTTGGTCTGAAAtgaa         ]
[+] EMBL CB667832             [                                                                         CCCACCCTATTCGTCGGTGATTTAGAGCAGCGATGGAGGGAGCAAACGGCGAAGATGTGCCGAGGAGGACATGTCGGAGGGCATCGGGGATCGGCGTCGTCGAGCATCGCCCATGATTGGGCGTCGGATGGAGCGGCCGGCGTCGAGGTCAGCCCACAGTGGAGCAGCGGAAGGTGAGGACGCCCTGCTCTGCCACTGCAGCTCGGGACTCAGGCAGGCGGGGAAAGGAGAGGAGGACCTGTCGCGGCGATGCAAATAGCTGCGCATGCAGGCGGCCAAAGGCGACGATTGAGCAAGCGAGCGATGGCGTCCTCGGCCTTGGGGAGCAGCAACAGCAGCGACGGCGTCGGCGAGCAGCAGGTGCAGTGTCCTCGTCCTCCACGAGCAACAGGCAGCCGGAGCGGCGGCGGCGTCATGTCCTTTGCAATCAGCGGACAGTGGCGTCGGCAAGCAGCGTAGCAGGTGCGGCGGCCTCGACCTTGACGAGCAGTTGGAGCAGCTCTGTGCGGGAGGTGGAGATGGAGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSS12242A            [                                                                                                                          CGAAGATGTGCCGAGGAGGACATGTCGGAGGGCATCGGGGATCGGCGTCGTCGAGCATCGCCCATGATTGGGCGTTGGATGGAGCGGCCGGCGTCGAGGTCAGCCCACAGTGGAGCAGCGGAAGGTGAGGACGCCCTGCTCTGCCACTGCAGCTCGGGACTCAGGCAGGCGGGGAAAGGAGAAGAGGACCTNTCGCGGCGATGCAAATAGCTNCGCATNCAAGCGGCCAAAGGCGACGATTTATCAAGCTAGCCATGGCGTCCTCGGNCTTTGGGAGCAGCAACANCAGCNACGGCGT NGCGAGCAGCAGGTNCAGTTTCCTCGTCCTTCACGAGCAACAAGCAACCGGAGCGNCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB641155             [                                                                                                                                   GCCGAGGAGGACATGTCGGAGGGCATCGGGGATCGGCGTCGTCGAGCATCGCCCATGATTGGGCGTCGGATGGAGCGGCCGGCGTCGAGGTCAGCCCACAGTGGAGCAGCGGAAGGTGAGGACGCCCTGCTCTGCCACTGCAGCTCGGGACTCAGGCAGGCGGGGAAAGGAGAGGAGGACCTGTCGCGGCGATGCAAATAGCTGCGCATGCAGGCGGCCAAAGGCGACGATTGAGCAAGCGAGCGATGGCGTCCTCGGCCTTGGGGAGCAGCAACAGCAGCGACGGCGTCGGCGAGCAGCAGGTGCAGTGTCCTCGTCCTCCACGAGCAACAGGCAGCCGGAGCGGCGGCGGCGTCATGTCCTTTGCAATCAGCGGACAGTGGCGTCGGCAAGCAGCGTAGCAGGTGCGGCGGCCTCGACCTTGACGAGCAGTTGGAGCAGCTCTGTGCGGGAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB667833             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTGTGTACAAGATTGTGCAATTGACAAGATTGATGTTCATGCCCCTAATCTCACCACATTTAAGTATAGAGGTCGTTTTAAAGTTATTATTG CCCTTCGGGAATGCTTGAAGCTTAAGACTGCAAGCATTGTATCCCCCATTGAGGACAACCTTTACTATATTTTCACTGAGCTTCCAAATGGGTTACCTCATGTTGAGAGACTACACGTGAATGTTTTTGTCAAGACTCAGATACCTGGATTTACTCAGGCCCCTTACAAATTTATCAATTTAAGGCATCTGACCATGAGGATAACCTATGAAATTGCTAAACGCTTTGGTAGAAATGCAGTTCTGCAACTAGCATATTTTTCGGAAGCTGCTCCGTTTTTGGTGGACCTTCATTTGGATATGCTGTGTTTAGATTTTTACGAGTCCCGTCCTGCAAGAGACGTGATTATGAATCGCCCTCACTACAGTCTCAAGAGAGCTTGCATAACCGGATTCAATGGCAATGGAGGGCAAGTTGCACTAGTAAAATTTATCCTCAAGAATGCAGTAAAATTGGAGGAAATGGTTATAGATCCAAAAGGTAGAATAACGAACCAAATGATGGGAGAGCACAAAGGCCGTAGAATGATTAAGGAAAAACTTGTTCCAAAATACAAGAATGGCCTACTTGTAATTCTATAACTTCTCAAGTTATGCATTCTGTTTTTCTCAAGGAATTTAAGTTATGTCTGGGCAGTGATATATTTACTTGCCCTTTAACCC TTTTTTTTTTTCTGAAGCAACAATGATAAATATTTTATGCGATGG                                                                                                                       ]
[-] EMBL CB672540             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGTATCCCCCATTGAGGACAACCTTTACTATATTTTCACTGAGCTTCCAAATGGGTTACCTCATGTTGAGAGACTACACGTGAATGTTTTTGTCAAGACTCAGATACCTGGATTTACTCAGGCCCCTTACAAATTTATCAATTTAAGGCATCTGACCATGAGGATAACCTATGAAATTGCTAAACGCTTTGGTAGAAATGCAGTTCTGCAACTAGCATATTTTTCGGAAGCTGCTCCGTTTTTGGTGGACCTTCATTTGGATATGCTGTGTTTAGATTTTTACGAGTCCCGTCCTGCAAGAGACGTGATTATGAATCGCCCTCACTACAGTCTCAAGAGAGCTTGCATAACCGGATTCAATGGCAATGGAGGGCAAGTTGCACTAGTAAAATTTATCCTCAAGAATGCAGTAAAATTGGAGGAAATGGTTATAGATCCAAAAGGTAGAATAACGAACCAAATGATGGGAGAGCACAAAGGCCGTAGAATGATTAAGGAAAAACTTGTTCCAAAATACAAGAATGGCCTACTTGTAATTCTATAACTTCTCAAGTTATGCATTCTGTTTTTCTCAATGAATTTAAGTTATGTCTGGGCAGTGATATATTTACTTGCCCTTTAACCCTTTTTTTTTTTTCTGAAGCAACGATAATAAATATTTTATGCGATGGAGCATTTGCTAAGTTAGAGTACTAGTAGAGTAGTGCAAATGTACTAGTATTGTGATTGTGTTTTTCTTTTTGCAATACTGAAGGGAAGGGTCATCTTGGTCTGAAAAAAAAAAAAAGAG]
[-] EMBL CB639096             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGCATCTGACCATGAGGATAACCTATGAAATTGCTAAACGCTTTGGTAGAAATGCAGTTCTGCAACTAGCATATTTTTCGGAAGCTGCTCCGTTTTTGGTGGACCTTCATTTGGATATGCTGTGTTTAGATTTTTACGAGTCCCGTCCTGCAAGAGACGTGATTATGAATCGCCCTCACTACAGTCTCAAGAGAGCTTGCATAACCGGATTCAATGGCAATGGAGGGCAAGTTGCACTAGTAAAATTTATCCTCAAGAATGCAGTAAAATTGGAGGAAATGGTTATAGATCCAAAAGGTAGAATAACGAACCAAATGATGGGAGAGCACAAAGGCCGTAGAATGATTAAGGAAAAACTTGTTCCAAAATACAAGAATGGCCTACTTGTAATTCTATAACTTCTCAAGTTATGCATTCTGTTTTTCTCAATGAATTTAAGTTATGTCTGGGCAGTGATATATTTACTTGCCCTTTAACCC TTTTTTTTTTTCTGAAGCAACGATAATAAATATTTTATGCGATGGAGCATTTGCTAAGTTAGAGTACTAGTAGAGTAGTGCAAATGTACTAGTATTGTGATTGTGTTTTTCTTTTTGCAATACTGAAGGGAAGGGTC T TTTGTTTGAAAAAAAA        ]
[-] EMBL CB639118             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACCTATGAAATTGCTAAACGCTTTGGTAGAAATGCAGTTCTGCAACTAGCATATTTTTCGGAAGCTGCTCCGTTTTTGGTGGACCTTCATTTGGATATGCTGTGTTTAGATTTTTACGAGTCCCGTCCTGCAAGAGACGTGATTATGAATCGCCCTCACTACAGTCTCAAGAGAGCTTGCATAACCGGATTCAATGGCAATGGAGGGCAAGTTGCACTAGTAAAATTTATCCTCAAGAATGCAGTAAAATTGGAGGAAATGGTTATAGATCCAAAAGGTAGAATAACGAACCAAATGATGGGAGAGCACAAAGGCCGTAGAATGATTAAGGAAAAACTTGTTCCAAAATACAAGAATGGCCTACTTGTAATTCTATAACTTCTCAAGTTATGCATTCTGTTTTTCTCAATGAATTTAAGTTATGTCTGGGCAGTGATATATTTACTTGCCCTTTAACCC TTTTTTTTTTTCTGAAGCAACGATAATAAATATTTTATGCGATGGAGCATTTGCTAAGTTAGAGTACTAGTAGAGTAGTGCAAATGTACTAGTATTGTGATTG                                                             ]




>consensus_12024#0
AGAGGCACCAGACTTGCTCTCTACATGGAAAAAAATCCCCAATCCCCAACTTGCTGTCTA
CAGAAAAAAGATCCCCAATCCATTCGTCGGTGATTTAGAGCAGCGATGGAGGGAGCAAAC
GGCGAAGATGTGCCGAGGAGGACATGTCGGAGGGCATCGGGGATCGGCGTCGTCGAGCAT
CGCCCATGATTGGGCGTCGGATGGAGCGGCCGGCGTCGAGGTCAGCCCACAGTGGAGCAG
CGGAAGGTGAGGACGCCCTGCTCTGCCACTGCAGCTCGGGACTCAGGCAGGCGGGGAAAG
GAGAGGAGGACCTGTCGCGGCGATGCAAATAGCTGCGCATGCAGGCGGCCAAAGGCGACG
ATTGAGCAAGCGAGCGATGGCGTCCTCGGCCTTGGGGAGCAGCAACAGCAGCGACGGCGT
CGGCGAGCAGCAGGTGCAGTGTCCTCGTCCTCCACGAGCAACAGGCAGCCGGAGCGGCGG
CGGCGTCATGTCCTTTGCAATCAGCGGACAGTGGCGTCGGCAAGCAGCGTAGCAGGTGCG
GCGGCCTCGACCTTGACGAGCAGTTGGAGCAGCTCTGTGCGGGAGGTGGAGATGGAGATG
GTGGGTGGATCGGAGGGGGGAGCCGCTCCTGTCGGCCACCAGCTCCACCCCGTCCTCCTC
TCCTCATTGCGGCGGCGACGGCCTCCTCCTCCATCCCCTCTTCCGGTGTTGGGCGCAGGA
GTAGGCGGCAGTTGGAGCGGGCGCTGCGGCGATGGACGCGACGGCGACGAGCACGGTCGC
GGGTGGCGGCTTCACAGGTACAACCATTTCAGCCAGAAGAGCACACATGGATGGGATCTG
TCTAGTAAACAAAAAAAGGAGACTGACGCTCAGGCCATGTGTTGAAGTAGATCACAGCAG
CAAGCGGGTAAGATCGCGATGTGCTAAGTTTGAGTCTCTCCCAGAGGACATAGTGTCAAG
GATTATTTCACAACTAACATTGAAGGAAGCTGTTGTAATGAGCTCGACATCGACCAAGTT
GAGAAGAGCTTGGATTTACCATCCTAATCTTTACTTGGACACTTCAATAGTGTTTGGCAG
TTCTGATCGCCAGAAGCGAGTGCCGAGCACTGAGACGTTTATTGACACAGTCAATTTTAT
CTTGAGGACGCACAGTGGTTTAGGAGTGAACAAACTTGCTGTTATGTTTGAGTTGAGGAA
GGAGCATGCACATGACATTGATGGATGGGTTTCCTTTGCTGTTACATCCAAGGCAAGGGT
TGTCACCCTCAACTTTTCTCCATATCATGGATCGCATGATCGCAGTTACAACTTCCCATG
TCATCTTTTCAACGGCAAAAGTGGATCTCACCTTCAAGTTCTTCAACTTGATACCGTTAC
TTTGGGTCCAAGTCCTCCTGGCTTTTGTGGCTTTGCTAACCTTACAATGCTTACTTTGGA
GAATGTGCTTGTATTGGGCGATTTGCAGTTCTTACTGAAATGCCCTGCCCTTGAATGGTT
GACTATCCGAATGTGCTCCCAGTTACATAATTTGTATGCTCCTGAACCATTGCCGCGGTT
GACATTTTTGTGTGTACAAGATTGTGCAATTGACAAGATTGATGTTCATGCCCCTAATCT
CACCACATTTAAGTATAGAGGTCGTTTTAAAGTTATTCTTGCCCCTTCGGGAATGCTTGA
AGCTTAAGACTGCAAGCATTGTATCCCCCATTGAGGACAACCTTTACTATATTTTCACTG
AGCTTCCAAATGGGTTACCTCATGTTGAGAGACTACACGTGAATGTTTTTGTCAAGACTC
AGATACCTGGATTTACTCAGGCCCCTTACAAATTTATCAATTTAAGGCATCTGACCATGA
GGATAACCTATGAAATTGCTAAACGCTTTGGTAGAAATGCAGTTCTGCAACTAGCATATT
TTTCGGAAGCTGCTCCGTTTTTGGTGGACCTTCATTTGGATATGCTGTGTTTAGATTTTT
ACGAGTCCCGTCCTGCAAGAGACGTGATTATGAATCGCCCTCACTACAGTCTCAAGAGAG
CTTGCATAACCGGATTCAATGGCAATGGAGGGCAAGTTGCACTAGTAAAATTTATCCTCA
AGAATGCAGTAAAATTGGAGGAAATGGTTATAGATCCAAAAGGTAGAATAACGAACCAAA
TGATGGGAGAGCACAAAGGCCGTAGAATGATTAAGGAAAAACTTGTTCCAAAATACAAGA
ATGGCCTACTTGTAATTCTATAACTTCTCAAGTTATGCATTCTGTTTTTCTCAATGAATT
TAAGTTATGTCTGGGCAGTGATATATTTACTTGCCCTTTAACCCTTTTTTTTTTTCTGAA
GCAACGATAATAAATATTTTATGCGATGGAGCATTTGCTAAGTTAGAGTACTAGTAGAGT
AGTGCAAATGTACTAGTATTGTGATTGTGTTTTTCTTTTTGCAATACTGAAGGGAAGGGT
CATCTTGGTCTGAAAAAAAAAAAAAGAG

consensusID : consensus_12024#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence 
                              [ACATGTCGGAGGGCATCGGGGATCGGCGTCGTCGAGCATCGCCCATGATTGGGCGTCGGATGGAGCGGCCGGCGTCGAGGTCAGCCCACAGTGGAGCAGCGGCCTTNGGGAGCAGCAACAGCAGCGACGGCGTCGGCGAGCAGCAGGTGCAGTGTCCTCGTCCTCCACGAGCAACAGGCAGCCGGAGCGGCGGCGGCGTCATGTCCTTTGCAATCAGCGGACAGTNGCGTCGGCAAGCAGCGTACAGGTTGCGGCGGCCTCGACTTTGACGAGCAGTTTGGAAGCAGCTCTGTTCCGGNAAGTTGGAGATGGANATGGTGGGTGGAATCNGAAGGGGGA]

[+] EMBL AU030183             [ACATGTCGGAGGGCATCGGGGATCGGCGTCGTCGAGCATCGCCCATGATTGGGCGTCGGATGGAGCGGCCGGCGTCGAGGTCAGCCCACAGTGGAGCAGCGGCCTTNGGGAGCAGCAACAGCAGCGACGGCGTCGGCGAGCAGCAGGTGCAGTGTCCTCGTCCTCCACGAGCAACAGGCAGCCGGAGCGGCGGCGGCGTCATGTCCTTTGCAATCAGCGGACAGTNGCGTCGGCAAGCAGCGTACAGGTTGCGGCGGCCTCGACTTTGACGAGCAGTTTGGAAGCAGCTCTGTTCCGGNAAGTTGGAGATGGANATGGTGGGTGGAATCNGAAGGGGGA]




>consensus_12024#1
ACATGTCGGAGGGCATCGGGGATCGGCGTCGTCGAGCATCGCCCATGATTGGGCGTCGGA
TGGAGCGGCCGGCGTCGAGGTCAGCCCACAGTGGAGCAGCGGCCTTNGGGAGCAGCAACA
GCAGCGACGGCGTCGGCGAGCAGCAGGTGCAGTGTCCTCGTCCTCCACGAGCAACAGGCA
GCCGGAGCGGCGGCGGCGTCATGTCCTTTGCAATCAGCGGACAGTNGCGTCGGCAAGCAG
CGTACAGGTTGCGGCGGCCTCGACTTTGACGAGCAGTTTGGAAGCAGCTCTGTTCCGGNA
AGTTGGAGATGGANATGGTGGGTGGAATCNGAAGGGGGA

consensusID : consensus_12024#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence 
                              [CGCTCCTGTCGGCCACCAGCTCCACCCCGTCCTCCTCTCCTCATTGCGGCGGCGACGGCCTCCTCCTCCATCCCCTCTTCCGGTGTTGGGCGCAGGNGTAGGCGGCNGTTGGNGCGGGCGCTGCGGCGATGGACGCGACGGCGACGAGCACGGTCGCGGGTGGCGGTGAGGACTGCGCTCCTCCATCCCCGATTTCCTCTTTGTGATGAATGTTTTAAGNGATTTTTTTTTCTTTTGCNATTTTTTCCTTTTGTTGGCCCCGGTGATTTGTGATGATTTTGCTTCAAAAA]

[+] EMBL AU030184             [CGCTCCTGTCGGCCACCAGCTCCACCCCGTCCTCCTCTCCTCATTGCGGCGGCGACGGCCTCCTCCTCCATCCCCTCTTCCGGTGTTGGGCGCAGGNGTAGGCGGCNGTTGGNGCGGGCGCTGCGGCGATGGACGCGACGGCGACGAGCACGGTCGCGGGTGGCGGTGAGGACTGCGCTCCTCCATCCCCGATTTCCTCTTTGTGATGAATGTTTTAAGNGATTTTTTTTTCTTTTGCNATTTTTTCCTTTTGTTGGCCCCGGTGATTTGTGATGATTTTGCTTCAAAAA]




>consensus_12024#2
CGCTCCTGTCGGCCACCAGCTCCACCCCGTCCTCCTCTCCTCATTGCGGCGGCGACGGCC
TCCTCCTCCATCCCCTCTTCCGGTGTTGGGCGCAGGNGTAGGCGGCNGTTGGNGCGGGCG
CTGCGGCGATGGACGCGACGGCGACGAGCACGGTCGCGGGTGGCGGTGAGGACTGCGCTC
CTCCATCCCCGATTTCCTCTTTGTGATGAATGTTTTAAGNGATTTTTTTTTCTTTTGCNA
TTTTTTCCTTTTGTTGGCCCCGGTGATTTGTGATGATTTTGCTTCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12024#0      AGAGGCACCAGACTTGCTCTCTACATGGAAAAAAATCCCCAATCCCCAACTTGCTGTCTA 60
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      CAGAAAAAAGATCCCCAATCCATTCGTCGGTGATTTAGAGCAGCGATGGAGGGAGCAAAC 120
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      GGCGAAGATGTGCCGAGGAGGACATGTCGGAGGGCATCGGGGATCGGCGTCGTCGAGCAT 180
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      CGCCCATGATTGGGCGTCGGATGGAGCGGCCGGCGTCGAGGTCAGCCCACAGTGGAGCAG 240
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      CGGAAGGTGAGGACGCCCTGCTCTGCCACTGCAGCTCGGGACTCAGGCAGGCGGGGAAAG 300
consensus_12024#1      ------------------------------------------ACATGTCGGAGGGCATCG 18
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      GAGAGGAGGACCTGTCGCGGCGATGCAAATAGCTGCGCATG--CAGGCGGCCAAAGGCGA 358
consensus_12024#1      GGGATCGGCGTC-GTCG-AGCATCGCCCATGATTGGGCGT---CGGATGGA-GCGGCCGG 72
consensus_12024#2      ------CGCTCCTGTCG-GCCACCAGCTCCACCCCGTCCTCCTCTCCTCATTGCGG-CGG 52
                              *   * ****   *                * *   *           * ** 

consensus_12024#0      CGATTGAGCAAGCGAGCGATGGCGTCCTCGGCCTTGGGGAGCAGCAACAGCAGCGACGGC 418
consensus_12024#1      CGTCGAGGTCAGCCCACAGTGGAG-CAGCGGCCTTNGGGAGCAGCAACAGCAGCGACGGC 131
consensus_12024#2      CGACGGCCTCCTCCTCCATCCCCT-CTTCCGGTGTTGGGCGCAGGNGTAG--GCGGCNGT 109
                       **          *   *        *  * *   * *** ****    **  *** * * 

consensus_12024#0      GTCGGCGAGCAGCAGGTGCAGTGTCCTCGTCCTCCACGAGCAACAGGCAGCCGGAGCGGC 478
consensus_12024#1      GTCGGCGAGCAGCAGGTGCAGTGTCCTCGTCCTCCACGAGCAACAGGCAGCCGGAGCGGC 191
consensus_12024#2      TGGNGCGGGC-GCTGCGGCGATGGACGCGACGGCGACGAGCA--CGGTCGC--GGGTGGC 164
                           *** ** ** *  **  **  * ** *  * *******   **  **  * * ***

consensus_12024#0      GGCGGCGTCATGTCCTTTGCAATCAGCGGACAGTGGCGTCGGCAAGCAGCGTAGCAGGTG 538
consensus_12024#1      GGCGGCGTCATGTCCTTTGCAATCAGCGGACAGTNGCGTCGGCAAGCAGCGTACAGGTTG 251
consensus_12024#2      GGTGAGGAC-TGCGCTCCTCCATCCCCGATT--TCCTCTTTGTGATGAATGTTTTAA--G 219
                       ** *  * * **  **   * ***  **     *    *  *  *  *  **       *

consensus_12024#0      CGGCGGCCTCGACCTTGACGAGCAGTT--GGAGCAGCTCTGTGC--GGGAGGTGGAGATG 594
consensus_12024#1      CGGCGGCCTCGACTTTGACGAGCAGTTTGGAAGCAGCTCTGTTCCGGNAAGTTGGAGATG 311
consensus_12024#2      NGATTTTTTTTTCTTTTGCNATTTTTTC----CTTTTGTTGGCCCCGGTGATTTGTGATG 275
                        *      *   * **  * *    **            **  *  *     * * ****

consensus_12024#0      GAGATGGTGGGTGGA-TCGGAGGGGGGAGCCGCTCCTGTCGGCCACCAGCTCCACCCCGT 653
consensus_12024#1      GANATGGTGGGTGGAATCNGAAGGGGGA-------------------------------- 339
consensus_12024#2      ATTTTGCTTCAAAAA--------------------------------------------- 290
                           ** *      *                                             

consensus_12024#0      CCTCCTCTCCTCATTGCGGCGGCGACGGCCTCCTCCTCCATCCCCTCTTCCGGTGTTGGG 713
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      CGCAGGAGTAGGCGGCAGTTGGAGCGGGCGCTGCGGCGATGGACGCGACGGCGACGAGCA 773
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      CGGTCGCGGGTGGCGGCTTCACAGGTACAACCATTTCAGCCAGAAGAGCACACATGGATG 833
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      GGATCTGTCTAGTAAACAAAAAAAGGAGACTGACGCTCAGGCCATGTGTTGAAGTAGATC 893
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      ACAGCAGCAAGCGGGTAAGATCGCGATGTGCTAAGTTTGAGTCTCTCCCAGAGGACATAG 953
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      TGTCAAGGATTATTTCACAACTAACATTGAAGGAAGCTGTTGTAATGAGCTCGACATCGA 1013
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      CCAAGTTGAGAAGAGCTTGGATTTACCATCCTAATCTTTACTTGGACACTTCAATAGTGT 1073
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      TTGGCAGTTCTGATCGCCAGAAGCGAGTGCCGAGCACTGAGACGTTTATTGACACAGTCA 1133
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      ATTTTATCTTGAGGACGCACAGTGGTTTAGGAGTGAACAAACTTGCTGTTATGTTTGAGT 1193
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      TGAGGAAGGAGCATGCACATGACATTGATGGATGGGTTTCCTTTGCTGTTACATCCAAGG 1253
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      CAAGGGTTGTCACCCTCAACTTTTCTCCATATCATGGATCGCATGATCGCAGTTACAACT 1313
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      TCCCATGTCATCTTTTCAACGGCAAAAGTGGATCTCACCTTCAAGTTCTTCAACTTGATA 1373
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      CCGTTACTTTGGGTCCAAGTCCTCCTGGCTTTTGTGGCTTTGCTAACCTTACAATGCTTA 1433
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      CTTTGGAGAATGTGCTTGTATTGGGCGATTTGCAGTTCTTACTGAAATGCCCTGCCCTTG 1493
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      AATGGTTGACTATCCGAATGTGCTCCCAGTTACATAATTTGTATGCTCCTGAACCATTGC 1553
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      CGCGGTTGACATTTTTGTGTGTACAAGATTGTGCAATTGACAAGATTGATGTTCATGCCC 1613
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      CTAATCTCACCACATTTAAGTATAGAGGTCGTTTTAAAGTTATTCTTGCCCCTTCGGGAA 1673
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      TGCTTGAAGCTTAAGACTGCAAGCATTGTATCCCCCATTGAGGACAACCTTTACTATATT 1733
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      TTCACTGAGCTTCCAAATGGGTTACCTCATGTTGAGAGACTACACGTGAATGTTTTTGTC 1793
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      AAGACTCAGATACCTGGATTTACTCAGGCCCCTTACAAATTTATCAATTTAAGGCATCTG 1853
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      ACCATGAGGATAACCTATGAAATTGCTAAACGCTTTGGTAGAAATGCAGTTCTGCAACTA 1913
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      GCATATTTTTCGGAAGCTGCTCCGTTTTTGGTGGACCTTCATTTGGATATGCTGTGTTTA 1973
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      GATTTTTACGAGTCCCGTCCTGCAAGAGACGTGATTATGAATCGCCCTCACTACAGTCTC 2033
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      AAGAGAGCTTGCATAACCGGATTCAATGGCAATGGAGGGCAAGTTGCACTAGTAAAATTT 2093
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      ATCCTCAAGAATGCAGTAAAATTGGAGGAAATGGTTATAGATCCAAAAGGTAGAATAACG 2153
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      AACCAAATGATGGGAGAGCACAAAGGCCGTAGAATGATTAAGGAAAAACTTGTTCCAAAA 2213
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      TACAAGAATGGCCTACTTGTAATTCTATAACTTCTCAAGTTATGCATTCTGTTTTTCTCA 2273
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      ATGAATTTAAGTTATGTCTGGGCAGTGATATATTTACTTGCCCTTTAACCCTTTTTTTTT 2333
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      TTCTGAAGCAACGATAATAAATATTTTATGCGATGGAGCATTTGCTAAGTTAGAGTACTA 2393
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      GTAGAGTAGTGCAAATGTACTAGTATTGTGATTGTGTTTTTCTTTTTGCAATACTGAAGG 2453
consensus_12024#1      ------------------------------------------------------------
consensus_12024#2      ------------------------------------------------------------
                                                                                   

consensus_12024#0      GAAGGGTCATCTTGGTCTGAAAAAAAAAAAAAGAG 2488
consensus_12024#1      -----------------------------------
consensus_12024#2      -----------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)