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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 709 fasta sequence
[TTTTTGACCTGGAAGCCAATTGAGCAGCCATATA-TGTCA-TGGGAATATTTCTCTT-GCAAGGGATACACAGCCACGCCATAGCCATAGTCCAGATGTAGC-GCAAAAGAAACCATAGAACAACATTATAGTTCTACACCTTCATTTTACTTGCAATTTTGCAAACATAT-GTACAC-GGTTC-T-GGTACTAAATCAAGTATTCATAATTAAAACTGAGAATA-G-GAAACATTGC-TGATACATACTCCCACAATTGTTTATGCATGCTGTAAAGAGTCTTTATTC-TGCATATATATGTGTAGCTCAGATAAA-AGATCTTAACTTTG-AACCA-TGTT--TGAGTT-AA-TT--TGTATC-TG-CAGCTCAG-ATAAAATATTTT-AAC-TTTG-AGCCATGTTTCATTT-AATTTGTAGT-ATCTGCCAATGCTTGCTTTCTCTTGCCACCGTTGGATGGGGGCCT-CAAAATTTGTG-AGC-TGAATGGT-A-CAGTTCAATGTAGT-CCAGGGCAGGCCGGTTCCAGGACCAATCTTGCTCCATGACCCTTTTGCAGAGGGAGTGGAACCAACCGCGGGCTTCAAACCAAGAAGAGATTGC-TCTGTTCAGGGCGTAATCCACACCATTACAGTCAGC-TCCAT-CAAAG-TGAACCCATTTGGTTCAAGGGCTAGAACTC-AACCCGG-CTTTGTCTGGNTACTTCAAAANATNTCTAAATCCCCGGTTCCCAANAAANGG]
[-] EMBL BI800046 [TTTTTGACCTGGAAGCCAATTGAGCAGCCATATATTGTCATTGGGAATATTTCTCTT GCAA GGATACACAG CACGCCATAGCCATAGTCCAGATGTAGCTGCAAAAGAAACCATAGAACAACATTATAGTTCTACACCTTCATTTTACTTGCAATTTTTGAAACATAT GTACACTGGTTCTT GGTACTAAATCAAGTATTCATAATTAAAACTGAGAATATGTGAAACATTGCTTGATACATACTCCCACAATTGTTTATGCATGCTGTAAAGAGTCTTTATTCTTGCATATATATGTGTAGCTCAGATAAACAGATCTTAACTTTGCAACCA TGTTTGTGAGTTCAATTT TGTATCTTG CAGCTCAG ATAAAATATTTT AACTTTTG AG ]
[-] EMBL BI798903 [ TTTTGACCTGGAAGCCAATTGAGCAGCCATATA TGTCA TGGGAATATTTCTCTTGGCAAGGGATACACAGCCACGCCATAGCCATAGTCCAGATGTAGC GCAAAAGAAACCATAGAACAACATTATAGTTCTACACCTTCATTTTACTTGCAA TTTGCAAACATATGGTACAC GGTTC TGGGTACTAAATCAAGTATTCATAATTAAAACTGAGAATA G GAAACATTG TGATACATACTCCCACAA TGTTTATGCATGCTGTAAAGAGTCTTTATTC TG ATATATATGTGTAGCTCAGATAAA AGATCTTAACTTTG AACCA TG T TGAGTT AA T TGTATC TG AG TCAG ATAAAATATTTT AAC TTTG AGCCATGTTTCATTT AATTTG AGT ATCTGGCAATGGTTG TTTCTCTTGGCA CGTTGGATG ]
[-] EMBL AK061604 [ ATATTTCTCTT GCAAGGCATACACAGCCACGCCATAGCCATAGTCCAGATGTAGC GCAAAAGAAACCATAGAACAACATTATAGTTCTACACCTTCATTTTACTTGCAATTTTGCAAACATAT GTACAC GGTTC T GGTACTAAATCAAGTATTCATAATTAAAACTGAGAATA G GAAACATAGC TGATACATACTCCCACAATTGTTTATGCATGCTGTAAAGAGTCTTTATTC TGCATATATATGTGTAGCTCAGATAAA AGATCTTAACTTTG AACCA TGTT TGAGTT AA TT TGTATC TG CAGCTCAG ATAAAATATTTT AAC TTTG AGCCATGTTTCATTT AATTTGTAGT ATCTGCCAATG ]
[-] EMBL BI797456 [ ttttTAGC GCAAAAGAAACCATAGAACAACATTATAGTTCTACACCTTCATTTTACTTGCAA TTTGCAAACATAT GTACAC GGTTC T GGTACTAAATCAAGTATTCATAATTAAAACTGAGAATA G GAAACATTGC TGATACATACTCCCACAA TGTTTATGCATGCTGTAAAGAGTCTTTATTC TGCATATATATGTGTAGCTCAGATAAA AGATCTTAACTTTG AACCAGTGTT TGAGTT AA TT TGTATC TG CAGCTCAG ATAAAATATTTT AAC TTTG AGCCATGTTTCATTT AATTTGTAGT ATCTGCCAATGCTTGCTTTCTCTTGCCACCGTTGGATGGGGGCCT CAAAATTTGTG AGC TGAATGGT A CAGTTCAATGTAGT CCAGGGCAGGCCGGTTCCAGGACCAATCTTGCTCCATGACCCTTTTGCAGAGGGAGTGGAACCAA CGCGGGCTTCAAACCAAGAAGAGATTGCGTCTGTTCAGGGCGTAATCCACACCATTACAGTCAGCGTCCAT CAAAG TGAACCCATTTGGTTCAAGGGCTAGAACT ]
[-] EMBL C99252 [ ttttttttGAACAACATTATAGTTCTACACCTTCATTTTACTTGCAATTTTGCAAACATAT GTACAC GGTTC T GGTACTAAATCAAGTATTCATAATTAAAACTGAGAATA G GNAACATAGC TGATACATACTCCCACAATTGTTTATGCATGCTGTAAAGAGTCTTTATTC TGCATATATATGTGTAGCTCAGATAAA AGATCTTAACTTTGCAACCA TGTT TGAGTT AA TT TGTATC TGn ]
[+] EMBL AA753424 [ tttttTTTTTGTTCTACACCTTCATTTTACTTGCAATTTTGCAAACATAT GTACAC GGTTC T GGTACTAAATCAAGTATTCATAATTAAAACTGAGAATA G GAAACATAGC TGATACATACTCCCACAATTGTTTATGCATGCTGTAAAGAGTCTTTATTC TGCATATATATGTGTAGCTCAGATAAA AGATCTTAACTTTG AACCA TGTT TGAGTT AA TT TGTATC TG CAGCTCAG ATAAAATATTTT AAC TTTG AGCCATGTTTCATTT AATTTGTAGT ATCTGCCAATGCTTGCTTTCTCTTGCCACCGTTGGATGGGGGCCT CAAAATTTGTG AGC TGAATGGT A CAGTTCAATGTANT CCAGGGCAGGCCGGTTCCANGAACAATCTTGCTCCATGA CCTTTTGCAGAAGGANTGGAACCAACCGCGGGCTTCAAACCAA AA AAAATGC CCTGTTCA GGCGTTATCC CACCATTACAGTCAGC TCCATCCAAAC TGAA CCATTTGGTTCAA GGCNAAAAATC AACCCGG CTTTGTCTGGNTACTTCAAAANATNTCTAAATCCCCGGTTCCCAANAAANGG]
[-] EMBL BI797796 [ ACTAAATCAAGTATTCATAATTAAAA TGAGAATA G GAAA ATTG TGATACATA TCCCA AATTGTTTATGCATG TGTAAAGAGTCTTTATTC TG ATATATATGTGTAG TCAGATAAA AGATCTTAACTTTG AACCA TGTT TGAGTTCAA TTTGTGTATC TGCCAGCTCAGCATAAAATATTTTCAAC TTTGCAGCCATGTTTCATTTCAATTTGTAGTCATCTGCCAATGCTTGCTTTCTCTTGCCACCGTTGGATGGGGGCCTCCAAAATTTGTGCAGCTTGAATGGTCACCAGTTCAATGTAGT CCAGGGCAGGCCGGTTCCAGGACCAATCTTGCTCCATGACCCTTTTGCAGAGGGAGTGGAACCAACCGCGGGCTTCAAACCAAGAAGAGATTG TCTGTTCAGGGCGTAATCCACACCATTACAGTCAGC TCCAT CAAAGCTGAACCCATTTGGTTCAAGGCCTACAACTCGAGCCCGGTCTTGGTCagtggt ]
[-] EMBL AA752696 [ tcyyGTATTCATAATTAAAACTGAGTATY G GAAACATAGC TGATACATACTCCCACAATTGTTTATGCATGCTGTAAAGAGTCTTTATTC TGCATATATATGTGTAGCTCAGATAAA AGATCTTAACTTTG AACCA TGTT TGAGTT AA TT TGTATC TG CAGCTCAG ATAAAATATTTT AAC TTTG AGCCATGTTTCATTT AATTTGTAGT ATCTGCCAATGCTTGCTTTCTCTTGCCACCGTTGGATGGGGNCCT CAAAATTTGTG AGC TGAATGGT A CAGTTCAATGTAGTCCCAGGGCAGGCCGGTTCCAGGACCAGTCTTGCTCCATGACCCTTTTGCAGAGGGAGTGGAACCAACCGCGGGCTTCAAACCAAGAAGAGATTGC TCTGTTCA ]
consensusID : consensus_12025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence
[ACACGTCTGTANTAATCAGTATCATAATAACTGAGATAGAACATAGCTGAAACAAACTCCCCACAATTGTTTATGGCATGCTGTAAAGAGTCTTTTATTCTGCATATATATGGGGTAGNTCAGATAAAAGATCTNAACTTTTGAACCATGTTTGAGTTAATTTGTATCTGCAGCTCAGATNAAATATTTTAACTTTGAGCCATGTTTCATTTAATTTGTAGTATCTGCCNATGCTTGCTTTCTCTTGCCACCGTTGGATGGGGGCCTCAAAATTTGTGAGCTGAATGGTACAGTTCAANNTAGTCCNGGCNCAGGCCGGTTCCAGGACCAGTCTTGCTCCATGACCCTTTTGCAGAGGGAGTGGAACCAACCGCGGGCTTCAAACCAAGAAGAGATTGCTCTGTTCCAGGGCGT]
[-] EMBL AA751684 [ACACGTCTGTANTAATCAGTATCATAATAACTGAGATAGAACATAGCTGAAACAAACTCCCCACAATTGTTTATGGCATGCTGTAAAGAGTCTTTTATTCTGCATATATATGGGGTAGNTCAGATAAAAGATCTNAACTTTTGAACCATGTTTGAGTTAATTTGTATCTGCAGCTCAGATNAAATATTTTAACTTTGAGCCATGTTTCATTTAATTTGTAGTATCTGCCNATGCTTGCTTTCTCTTGCCACCGTTGGATGGGGGCCTCAAAATTTGTGAGCTGAATGGTACAGTTCAANNTAGTCCNGGCNCAGGCCGGTTCCAGGACCAGTCTTGCTCCATGACCCTTTTGCAGAGGGAGTGGAACCAACCGCGGGCTTCAAACCAAGAAGAGATTGCTCTGTTCCAGGGCGT]
consensusID : consensus_12025#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence
[CGAGGCGCTATGGATCCATCCCTATTGTTCGGAAAACCGGAGGACTTTACGACACTGTTTTCGACGTAGACCATGACAAAGACCGGGCTCGAGTTCTAGGCCTTGAACCAAATGGGTTCAGCTTTGATGGAGCTGACTGTAATGGTGTGGATTACAGCCCTGAACAGA]
[+] EMBL AA752475 [CGAGGCGCTATGGATCCATCCCTATTGTTCGGAAAACCGGAGGACTTTACGACACTGTTTTCGACGTAGACCATGACAAAGACCGGGCTCGAGTTCTAGGCCTTGAACCAAATGGGTTCAGCTTTGATGGAGCTGACTGTAATGGTGTGGATTACAGCCCTGAACAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12025#0 TTTTTGACCTGGAAGCCAATTGAGCAGCCATATATGTCATGGGAATATTTCTCTTGCAAG 60
consensus_12025#1 ------------------------------------------------------------
consensus_12025#2 ------------------------------------------------------------
consensus_12025#0 GGATACACAGCCACGCCATAGCCATAGTCCAGATGTAGCGCAAAAGAAACCATAGAACAA 120
consensus_12025#1 ------------------------------------------------------------
consensus_12025#2 ------------------------------------------------------------
consensus_12025#0 CATTATAGTTCTACACCTTCATTTTACTTGCAATTTTGCAAACATATGTACACGGTTCTG 180
consensus_12025#1 -------------------------------------------------ACACGTCTGTA 11
consensus_12025#2 ------------------------------------------------------------
consensus_12025#0 GTACTAAATCAAGTATTCATAATTAAAACTGAGAATAGGAAACATTGCTGATACATACTC 240
consensus_12025#1 NTA----ATCA-GTAT-CATAAT---AACTGAGA-TAG--AACATAGCTGAAACAAACTC 59
consensus_12025#2 ------------------------------------------------------------
consensus_12025#0 CC-ACAATTGTTTATG-CATGCTGTAAAGAGTCTTT-ATTCTGCATATATATGTG-TAGC 296
consensus_12025#1 CCCACAATTGTTTATGGCATGCTGTAAAGAGTCTTTTATTCTGCATATATATGGGGTAGN 119
consensus_12025#2 ---------------------------CGAGGCGCTATGGATCCATCCCTATTGTTCGGA 33
*** * * * *** *** *
consensus_12025#0 TCAGATAAAAGATCTTAACTTT-GAACCATGTTTGAGTTAATTTGTATCTGCAGCTCAGA 355
consensus_12025#1 TCAGATAAAAGATCTNAACTTTTGAACCATGTTTGAGTTAATTTGTATCTGCAGCTCAGA 179
consensus_12025#2 --AAACCGGAGGACTTTACGAC---ACTGTTTTCGACGTAGACCATGACAAAGACCGGGC 88
* * ** ** ** ** * ** ** ** * * * *
consensus_12025#0 TAAAATATTTTAACTTTGAGCCATGTTTCATTTAATTTGTAGTATCTGCCAATGCTTGCT 415
consensus_12025#1 TNAAATATTTTAACTTTGAGCCATGTTTCATTTAATTTGTAGTATCTGCCNATGCTTGCT 239
consensus_12025#2 TCGAGT-TCTAGGCCTTGAACCAAATGGGTTCAGCTTTGATGGAGCTGACTGTAATGG-T 146
* * * * * * **** *** * * **** * * *** * * * * *
consensus_12025#0 TTCTCTTGCCACCGTTGGATGGGGGCCTCAAAATTTGTGAGCTGAATGGTACAGTTCAAT 475
consensus_12025#1 TTCTCTTGCCACCGTTGGATGGGGGCCTCAAAATTTGTGAGCTGAATGGTACAGTTCAAN 299
consensus_12025#2 GTGGATTACAGCC-CTGAACAGA------------------------------------- 168
* ** * ** ** * *
consensus_12025#0 GTAGTCCAGG-GCAGGCCGGTTCCAGGACCAATCTTGCTCCATGACCCTTTTGCAGAGGG 534
consensus_12025#1 NTAGTCCNGGCNCAGGCCGGTTCCAGGACCAGTCTTGCTCCATGACCCTTTTGCAGAGGG 359
consensus_12025#2 ------------------------------------------------------------
consensus_12025#0 AGTGGAACCAACCGCGGGCTTCAAACCAAGAAGAGATTGCTCTGTTC-AGGGCGTAATCC 593
consensus_12025#1 AGTGGAACCAACCGCGGGCTTCAAACCAAGAAGAGATTGCTCTGTTCCAGGGCGT----- 414
consensus_12025#2 ------------------------------------------------------------
consensus_12025#0 ACACCATTACAGTCAGCTCCATCAAAGTGAACCCATTTGGTTCAAGGGCTAGAACTCAAC 653
consensus_12025#1 ------------------------------------------------------------
consensus_12025#2 ------------------------------------------------------------
consensus_12025#0 CCGGCTTTGTCTGGNTACTTCAAAANATNTCTAAATCCCCGGTTCCCAANAAANGG 709
consensus_12025#1 --------------------------------------------------------
consensus_12025#2 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||