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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1106 fasta sequence
[CTAGAGAGGCCACAGGCGGCGGCGGCAGCAGCGGAAGTCTCTCGTCTCGTCCGTGGAGAAAGGGGGAAGACGAAGATGTCGACGGAGGCGGAGACCACCAGCGCCGCCGCCCCCGCCCCCGCCCCCGCCCCCGCATCGGCGCCGGCGCGGTGCCAGCGGATAGGCTGCGACGCCACGTTCACCGACGACAACAACCCCGACGGCTCCTGCCAATACCACCCCTCCGGACCTATGTTTCATGATGGCATGAAACAGTGGAGTTGCTGTAAGCAAAAAAGCCATGATTTTAGCCTATTTTTGGCTATTCCTGGGTGCAAAACTGGAAAGCACACAACTGAGAAACCAATCACAAAAGCAGTTCCTACTAAACCATCAAAGGCAGTTCCAGTCCAGAC-TTCGAAGC-AGAGT-G-TGGGAGC-TGACACTTGC-TCAA-GGTGCCGTCAAGGTTTCTTTTGCTCTGACCATGGATCACAACCCAAGGCACAAATACCAACC-GCTACCAGTGATACTAACATGGTACCTGTTGAGAAGCCTGCAGTTCCACCACCAAAGAAAAAAATTGATCTGAATGAGCCTAGGGTTTGTAAGAACAAAGGATGTGGTAAAACCTACAAGGAGAAGGATAATCATGATGAAGCATGCGATTACCATCCAGGACCTGCAGTTTTTCGCGACAGGATTAGAGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTT-GGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGT-CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTCGGTCTCGTTCGTTGGCTCGTT-GCCAATTCTTCATAGTTAGAAAATCAAATGCTCCATCTAAATGCTAAAAAGCAGACTTTTGGTAACACCCATCTTTC]
[+] EMBL AK111881 [CTAGAGAGGCCACAGGCGGCGGCGGCAGCAGCGGAAGTCTCTCGTCTCGTCCGTGGAGAAAGGGGGAAGACGAAGATGTCGACGGAGGCGGAGACCACCAGCGCCGCCGCCCCCGCCCCCGCCCCCGCCCCCGCATCGGCGCCGGCGCGGTGCCAGCGGATAGGCTGCGACGCCACGTTCACCGACGACAACAACCCCGACGGCTCCTGCCAATACCACCCCTCCGGACCTATGTTTCATGATGGCATGAAACAGTGGAGTTGCTGTAAGCAAAAAAGCCATGATTTTAGCCTATTTTTGGCTATTCCTGGGTGCAAAACTGGAAAGCACACAACTGAGAAACCAATCACAAAAGCAGTTCCTACTAAACCATCAAAGGCAGTTCCAGTCCAGAC TTCGAAGC AGAGT G TGGGAGC TGACACTTGC TCAA GGTGCCGTCAAGGTTTCTTTTGCTCTGACCATGGATCACAACCCAAGGCACAAATACCAACC GCTACCAGTGATACTAACATGGTACCTGTTGAGAAGCCTGCAGTTCCACCACCAAAGAAAAAAATTGATCTGAGTGAGCCTAGGGTTTGTAAGAACAAAGGATGTGGTAAAACCTACAAGGAGAAGGATAATCATGATGAAGCATGCGATTACCATCCAGGACCTGCAGTTTTTCGCGACAGGATTAGAGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTT GGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGT CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTCGGTCTCGTTCGTTGGCTCGTT GCCAATTCTTCATAGTTAGAAAATCAAATGCTCCATCTAAATGCTATCCTGCAGACTTTTGGTAACACCCATCTTTC]
[+] EMBL AU082374 [ ACAGGCGGNGGCGGCAGCAGCGGAAGTCTCTCGTCTCGTCCGTGGAGAAAGGGGGAAGACGAAGATGTCGACGGAGGCGGAGACCACCAGCGCCGCCGCCCCCGCCCCCGCCCCCGCCCCCGCATCGGCGCCGGCGCGGTGCCAGCGGATAGGCTGCGACGCCACGTTCACCGACGACAACAACCCCGACGGCTCCTGCCAATACCACCCCTCCGGACCTATGTTTCATGATGGCATGAAACAGTGGAGTTGCTGTAAGCAAAAAAGCCATGATTTTAGCCTATTTTTGGCTATTCCTGGGTGCAAAACTGGAAAGCACACAACTGAGAAACCAATCACAAAAGCAGTTCCTACTAAACCATTAAAGGCAGTTCCAGTCCAGAC TTCTAAGC AGAGT G TGGGAGC TGACACTTGC TCAA GGTGCCGTCAAGGTTTCTTTTGCTCTGACCATGGATCACAACCCAAGGCACAAATACCAACC GCTACCAGTGATACTAACATGGTACCTGTTGAGAA ]
[+] EMBL C28356 [ ACAGGCGGCGGCGGCA NAGCGGAAGTCTCTCGTCTCGTCCGTGGAGAAAGGGGGAAGACGAAGATGTCGACGGAGGCGGAGACCACCAGCNNCGCCGCCCCCGCCCCCGCCCCCGCCCCCGCATCGGCGCCGGCGCGGTGCCAGCGGATAGGCTGCGACGCCACGTTCACCGACGACAACAACCCCGACGGCTCCTGCCAATACCACCCCTCCGGACCTATGTTTCATGATGGCATGAAACAGTGGAGTTGCTGTAAGAAAAAAAGCCATGATTTTAGCCTATTTTTGGCTATTCCTGGGTGCAAAACTGGAAAGCACACAACTGAGAAACCAATCACAAAAGCAGTTNCTACTAAACCATCAAAGGCAGTTCCAGTNCAGACTTTGGAGGC AGAGTNT TGGGAG ]
[+] EMBL AU082375 [ GAAACAAAAGT GTTGGAAGCTTGACACTTGCNTCAAGGGTNCCGTCAAGGTTTCTTTTGCTCTGACCATGGATCCCAACCCAAGGCACAAATACCAACCGGCTACCAGTGATACTAACATGGTACCTGTTGAGAAGCCTGCAGTTCCACCACCAAAGAAAAAAATTGATCTGAATGAGCCTAGGGTTTGTAAGAACAAAGGATGTGGTAAAACCTACAAGGAGAAGGATAATCATGATGAAGCATGCGATTACCATCCAGGACCTGCAGTTTTTCGCGACAGGATTAGAGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTT GGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGT CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTCGGTCTCGTTCGTTGGCTCGTT GCCAATTCTTCATAGTTAGAAAATCAAATGCTCCATCTAAATGCTAAAAA ]
[-] EMBL CA754519 [ TTTGCTCTGACCATGGATCACAACCCAAGGCACAAATACCAACC GCTACCAGTGATACTAACATGGTACCTGTTGAGAAGCCTGCAGTTCCACCACCAAAGAAAAAAATTGATCTGAATGAGCCTAGGGTTTGTAAGAACAAAGGATGTGGTAAAACCTACAAGGAGAAGGATAATCATGATGAAGCATGCGATTACCATCCAGGACCTGCAGTTTTTCGCGACAGGATTAGAGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTT GGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGT CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTCGGTCTCGTTCGTTGGCTCGTT GCCAATTCTTCATAGTTAGAAAATCAAAT ]
[+] EMBL AU092896 [ TGGAAATNTTGTGATATTCATGCCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGANCCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTT GGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGT CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTCGGTCTCGTTCGTTGGCTCGTT GCCAATTCTTCATAGTTAGAAAATCAAATGCTCCATCTAAATGCTAAAAA ]
[+] EMBL BI796552 [ GATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTT GGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGC AAAGTGTGCGTGGTGTTTCATTTTTTGT CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTCGGTCTCGTTCGTTGGCTCGTT GCC ATTCTTCATAGTTAGAAAATC AATGCTCaaaaaa ]
[+] EMBL BM420460 [ tccgGCATAAGGTGCAATTTTTATGGAGAATTTTACTTCGGATTCGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGC TGGTGTTTCATTTTTTGT CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTC GTCTCGTTCGTTGGCTCGTTCCCCCATTCTTCATAGTTAGAAAATCAAAa ]
[+] EMBL D42877 [ GTGTGCCTGCTTCAAAAGTGTCCGTGGTGTTTCATTTTTTGTGCTGAAACGGGGNCTTGAAATTGTGTGTGGNGACTTCGGTCTCGTTCGTTGGCTCGTT GCCAATTCTTCATAGTTAGNAAATCAAATGCTCCA ]
consensusID : consensus_12026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence
[AGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTTGGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGTCTGAAACGGGGACTTGAAATTGTGTGTGGGAGACTTCGGTCTCGTTCGTTGGGCTCGTTGGCCAATTTCTTCATAGTTAGAAAATCAAATGCNCCATCTAAAAAAAAAAANA]
[+] EMBL AU162370 [AGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTTGGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGTCTGAAACGGGGACTTGAAATTGTGTGTGGGAGACTTCGGTCTCGTTCGTTGGGCTCGTTGGCCAATTTCTTCATAGTTAGAAAATCAAATGCNCCATCTAAAAAAAAAAANA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12026#0 CTAGAGAGGCCACAGGCGGCGGCGGCAGCAGCGGAAGTCTCTCGTCTCGTCCGTGGAGAA 60
consensus_12026#1 ------------------------------------------------------------
consensus_12026#0 AGGGGGAAGACGAAGATGTCGACGGAGGCGGAGACCACCAGCGCCGCCGCCCCCGCCCCC 120
consensus_12026#1 ------------------------------------------------------------
consensus_12026#0 GCCCCCGCCCCCGCATCGGCGCCGGCGCGGTGCCAGCGGATAGGCTGCGACGCCACGTTC 180
consensus_12026#1 ------------------------------------------------------------
consensus_12026#0 ACCGACGACAACAACCCCGACGGCTCCTGCCAATACCACCCCTCCGGACCTATGTTTCAT 240
consensus_12026#1 ------------------------------------------------------------
consensus_12026#0 GATGGCATGAAACAGTGGAGTTGCTGTAAGCAAAAAAGCCATGATTTTAGCCTATTTTTG 300
consensus_12026#1 ------------------------------------------------------------
consensus_12026#0 GCTATTCCTGGGTGCAAAACTGGAAAGCACACAACTGAGAAACCAATCACAAAAGCAGTT 360
consensus_12026#1 ------------------------------------------------------------
consensus_12026#0 CCTACTAAACCATCAAAGGCAGTTCCAGTCCAGACTTCGAAGCAGAGTGTGGGAGCTGAC 420
consensus_12026#1 ------------------------------------------------------------
consensus_12026#0 ACTTGCTCAAGGTGCCGTCAAGGTTTCTTTTGCTCTGACCATGGATCACAACCCAAGGCA 480
consensus_12026#1 ------------------------------------------------------------
consensus_12026#0 CAAATACCAACCGCTACCAGTGATACTAACATGGTACCTGTTGAGAAGCCTGCAGTTCCA 540
consensus_12026#1 ------------------------------------------------------------
consensus_12026#0 CCACCAAAGAAAAAAATTGATCTGAATGAGCCTAGGGTTTGTAAGAACAAAGGATGTGGT 600
consensus_12026#1 ------------------------------------------------------------
consensus_12026#0 AAAACCTACAAGGAGAAGGATAATCATGATGAAGCATGCGATTACCATCCAGGACCTGCA 660
consensus_12026#1 ------------------------------------------------------------
consensus_12026#0 GTTTTTCGCGACAGGATTAGAGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGAT 720
consensus_12026#1 --------------------AGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGAT 40
****************************************
consensus_12026#0 GAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATT 780
consensus_12026#1 GAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATT 100
************************************************************
consensus_12026#0 TTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGT 840
consensus_12026#1 TTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGT 160
************************************************************
consensus_12026#0 AGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTTGGAGTTGGGGAGTGTGGCAAAGA 900
consensus_12026#1 AGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTTGGAGTTGGGGAGTGTGGCAAAGA 220
************************************************************
consensus_12026#0 TACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGT 960
consensus_12026#1 TACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGT 280
************************************************************
consensus_12026#0 TTCATTTTTTGTCTGAAACGGGGACTTGAAATTGTGTGTGG-AGACTTCGGTCTCGTTCG 1019
consensus_12026#1 TTCATTTTTTGTCTGAAACGGGGACTTGAAATTGTGTGTGGGAGACTTCGGTCTCGTTCG 340
***************************************** ******************
consensus_12026#0 TTGG-CTCGTTG-CCAATT-CTTCATAGTTAGAAAATCAAATGCTCCATCTAAATGCTAA 1076
consensus_12026#1 TTGGGCTCGTTGGCCAATTTCTTCATAGTTAGAAAATCAAATGCNCCATCTAAAAAAAAA 400
**** ******* ****** ************************ ********* **
consensus_12026#0 AAAGCAGACTTTTGGTAACACCCATCTTTC 1106
consensus_12026#1 AANA-------------------------- 404
**
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||