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Oryza sativa
cluster # 12036 cluster # 12036       Sequences # 10       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12036#0 length = 1137 sequences # 3  
consensus_12036#1 length = 1019 sequences # 3  
consensus_12036#2 length = 535 sequences # 1  
consensus_12036#3 length = 221 sequences # 1  
consensus_12036#4 length = 180 sequences # 1  
consensus_12036#5 length = 152 sequences # 1  

consensusID : consensus_12036#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1137
fasta sequence
                              [CCCGTAACATTAACTCCTTTGTTCAGCTTGACACTCCATTGCAGAGGGAGGGTATAGCTGGTGACAGAGAGAAATGGGCGAGGAGGCCAATTGCAACGTCGCGATGGAGTCCGCTGCGCCCAAGGAGAACGGCCACACCACCGGTGGCGCCGCGGCGGAGGCCAAGGCCGCCGCCGCCTGGGCTGAGATCGCCGTCACCGACGCCGCGGCGGTGCCAAAGCCGACGCCGCCGCCTGCGGCCGTGGCCGTCGACCCCCGGCTTCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCACTTCCCCAAGCAAGGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGCCGCCGTCGCCGGGATTGAGGCTAGGGGGTTCATATTTGGCCCGGCGATCGCGCTGGCAATTGGCGCCAAATTCATACCGTTGCGTAAGCCCAAGAAACTCCCAGGCGAGGTGATTTCTGAGACGTATGTTCTCGAGTACGGGACCGATTGCTTGCAGATGCATGTTGGCGCCATTGAACCTGGTGAGCGTGTGCTGATCGTTGATGATCTGGTTGCAACTGGTGGGACACTTTGTGCTGCTATAAGGCTTCTTGAACGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCAAAATTTAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGAATATGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTGCAAGTGAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCTGCTAAGTATTAGAGGGGA-GGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAGTAGTTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCATTGTTGATTAAAATTTCCGTGGTTTCGATCAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK069606             [CCCGTAACATTAACTCCTTTGTTCAGCTTGACACTCCATTGCAGAGGGAGGGTATAGCTGGTGACAGAGAGAAATGGGCGAGGAGGCCAATTGCAACGTCGCGATGGAGTCCGCTGCGCCCAAGGAGAACGGCCACACCACCGGTGGCGCCGCGGCGGAGGCCAAGGCCGCCGCCGCCTGGGCTGAGATCGCCGTCACCGACGCCGCGGCGGTGCCAAAGCCGACGCCGCCGCCTGCGGCCGTGGCCGTCGACCCCCGGCTTCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCACTTCCCCAAGCAAGGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGCCGCCGTCGCCGGGATTGAGGCTAGGGGGTTCATATTTGGCCCGGCGATCGCGCTGGCAATTGGCGCCAAATTCATACCGTTGCGTAAGCCCAAGAAACTCCCAGGCGAGGTGATTTCTGAGACGTATGTTCTCGAGTACGGGACCGATTGCTTGCAGATGCATGTTGGCGCCATTGAACCTGGTGAGCGTGTGCTGATCGTTGATGATCTGGTTGCAACTGGTGGGACACTTTGTGCTGCTATAAGGCTTCTTGAACGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCAAAATTTAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGAATATGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTGCAAGTGAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCTGCTAAGTATTAGAGGGGA GGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAGTAGTTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACACCGATTACTAGCTG                                                                                           ]
[+] EMBL BE039843             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTCATTGGGCTCCCAAAATTTAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCTCGCGAATATGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTGCAAGTGAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCTGCTAAGTATTAGAGGGGA GGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAGTAGTTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCATTGTTGATTAAAATTTCCGTGGTTTCGATCAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760794             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gaggacGAGGCAAGGGGGAGAGAGAGAGAGAGAGAGAGAGATTGGTGAGTGGGGAGTAGTTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGAGAACACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCATTGTTGATTAAAATTTCCGTGGTTTCGATCTAAAAAAAAAAAAA                   ]


>consensus_12036#0 CCCGTAACATTAACTCCTTTGTTCAGCTTGACACTCCATTGCAGAGGGAGGGTATAGCTG GTGACAGAGAGAAATGGGCGAGGAGGCCAATTGCAACGTCGCGATGGAGTCCGCTGCGCC CAAGGAGAACGGCCACACCACCGGTGGCGCCGCGGCGGAGGCCAAGGCCGCCGCCGCCTG GGCTGAGATCGCCGTCACCGACGCCGCGGCGGTGCCAAAGCCGACGCCGCCGCCTGCGGC CGTGGCCGTCGACCCCCGGCTTCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCACTT CCCCAAGCAAGGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTT CAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGCCGCCGTCGC CGGGATTGAGGCTAGGGGGTTCATATTTGGCCCGGCGATCGCGCTGGCAATTGGCGCCAA ATTCATACCGTTGCGTAAGCCCAAGAAACTCCCAGGCGAGGTGATTTCTGAGACGTATGT TCTCGAGTACGGGACCGATTGCTTGCAGATGCATGTTGGCGCCATTGAACCTGGTGAGCG TGTGCTGATCGTTGATGATCTGGTTGCAACTGGTGGGACACTTTGTGCTGCTATAAGGCT TCTTGAACGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCAAAATT TAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGAATA TGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTGCAA GTGAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCTGCT AAGTATTAGAGGGGAGGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAGTAG TTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCACTGAAAAAAGAGCTTGTAGTTT CTGTCGGGAACACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCATTGTTG ATTAAAATTTCCGTGGTTTCGATCAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12036#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1019
fasta sequence
                              [CCCGTAACATTAACTCCTTTGTTCAGCTTGACACTCCATTGCAGAGGGAGGGTATAGCTGGTGACAGAGAGAAATGGGCGAGGAGGCCAAGGCCGCCGCCGCCTGGGCTGAGATCGCCGTCACCGACGCCGCGGCGGTGCCAAAGCCGACGCCGCCGCCTGCGGCCGTGGCCGTCGACCCCCGGCTTCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCACTTTCCCAAGCAAGGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGCCGCCGTCGCCGGGATTGAGGCTAGGGGGTTCATATTTGGCCCGGCGATCGCGCTGGCAATTGGCGCCAAATTCATACCGTTGCGTAAGCCCAAGAAACTCCCAGGCGAGGTGATTTCTGAGACGTATGTTCTCGAGTACGGGACCGATTGCTTGCAGATGCATGTTGGCGCCATTGAACCTGGTGAGCGTGTGCTGATCGTTGATGATCTGGTTGCAACTGGTGGGACACTTTGTGCTGCTATAAGGCTTCTTGAACGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCAAAATTTAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGAATATGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTGCAAGTGAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCTGCTAAGTATTAGAGGGGAGGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAGTAGTTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCATTGTTGATTAAAATTTCCGT]

[+] EMBL AK070784             [CCCGTAACATTAACTCCTTTGTTCAGCTTGACACTCCATTGCAGAGGGAGGGTATAGCTGGTGACAGAGAGAAATGGGCGAGGAGGCCAAGGCCGCCGCCGCCTGGGCTGAGATCGCCGTCACCGACGCCGCGGCGGTGCCAAAGCCGACGCCGCCGCCTGCGGCCGTGGCCGTCGACCCCCGGCTTCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCACTTTCCCAAGCAAGGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGCCGCCGTCGCCGGGATTGAGGCTAGGGGGTTCATATTTGGCCCGGCGATCGCGCTGGCAATTGGCGCCAAATTCATACCGTTGCGTAAGCCCAAGAAACTCCCAGGCGAGGTGATTTCTGAGACGTATGTTCTCGAGTACGGGACCGATTGCTTGCAGATGCATGTTGGCGCCATTGAACCTGGTGAGCGTGTGCTGATCGTTGATGATCTGGTTGCAACTGGTGGGACACTTTGTGCTGCTATAAGGCTTCTTGAACGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCAAAATTTAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGAATATGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTGCAAGTGAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCTGCTAAGTATTAGAGGGGAGGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAGTAGTTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCATTGTTGATTAAAATTTCCGT]
[+] EMBL AU174468             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGGTGAGCGTGTGCTGATCGTTGATGATCTGGTTGCAACTGGTGGGACACTTTGTGCTGCTATAAGGCTTCTTGAACGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCAAAATTTAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGAATATGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTGCAAGTGAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCTGCTAAGTATTAGAGGGGAGGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTG                                                                                                                                              ]
[+] EMBL AU174469             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTGCTGCTATAAGGCTTCTTGAACGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCAAAATTTAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGAATATGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTGCAAGTGAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCTGCTAAGTATTAGAGGGGAGGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAGTAGTTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCATTGTTGATTAAAAaa     ]


>consensus_12036#1 CCCGTAACATTAACTCCTTTGTTCAGCTTGACACTCCATTGCAGAGGGAGGGTATAGCTG GTGACAGAGAGAAATGGGCGAGGAGGCCAAGGCCGCCGCCGCCTGGGCTGAGATCGCCGT CACCGACGCCGCGGCGGTGCCAAAGCCGACGCCGCCGCCTGCGGCCGTGGCCGTCGACCC CCGGCTTCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCACTTTCCCAAGCAAGGCAT CATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAAGGACGCCGTCGA CATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGCCGCCGTCGCCGGGATTGAGGCTAG GGGGTTCATATTTGGCCCGGCGATCGCGCTGGCAATTGGCGCCAAATTCATACCGTTGCG TAAGCCCAAGAAACTCCCAGGCGAGGTGATTTCTGAGACGTATGTTCTCGAGTACGGGAC CGATTGCTTGCAGATGCATGTTGGCGCCATTGAACCTGGTGAGCGTGTGCTGATCGTTGA TGATCTGGTTGCAACTGGTGGGACACTTTGTGCTGCTATAAGGCTTCTTGAACGCGCTGG AGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCAAAATTTAAGGATTTCTACAA GCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGAATATGAAAAATAAAGAGA TTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTGCAAGTGAGCGCTGGACGG ATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCTGCTAAGTATTAGAGGGGA GGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAGTAGTTCTTGTAGGCTGAG TAGTACTAGTTTTTTCAGGGGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACACCG ATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCATTGTTGATTAAAATTTCCGT



consensusID : consensus_12036#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence
                              [TTTCTTCGAGTACGGGCCGTTGCTTGCAGGATGCATTGTGGGCCCTTGAACCTGGTGAGCGTGTGCTGATCGTGATGATCTGTTCCAACTGGTGGGACACTTTGTGCTGCTATAAGGCTTCTTGACGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCCAAATTTAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGAATATGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTGCAAGTGAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCTGCTAAGTATTAGAGGGGAGGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAGTAGTTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACCCCGATTACTAGCTGAAACATCATCAGTTCTGTTCTAAAAAAAAAA]

[+] EMBL BI805900             [TTTCTTCGAGTACGGGCCGTTGCTTGCAGGATGCATTGTGGGCCCTTGAACCTGGTGAGCGTGTGCTGATCGTGATGATCTGTTCCAACTGGTGGGACACTTTGTGCTGCTATAAGGCTTCTTGACGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCCAAATTTAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGAATATGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTGCAAGTGAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCTGCTAAGTATTAGAGGGGAGGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAGTAGTTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACCCCGATTACTAGCTGAAACATCATCAGTTCTGTTCTAAAAAAAAAA]


>consensus_12036#2 TTTCTTCGAGTACGGGCCGTTGCTTGCAGGATGCATTGTGGGCCCTTGAACCTGGTGAGC GTGTGCTGATCGTGATGATCTGTTCCAACTGGTGGGACACTTTGTGCTGCTATAAGGCTT CTTGACGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCCAAATTTA AGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGAATATG AAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTGCAAGT GAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCTGCTAA GTATTAGAGGGGAGGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAGTAGTT CTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCACTGAAAAAAGAGCTTGTAGTTTCT GTCGGGAACCCCGATTACTAGCTGAAACATCATCAGTTCTGTTCTAAAAAAAAAA



consensusID : consensus_12036#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 221
fasta sequence
                              [CAGAGGCCGACCCAAGGGGTGGGTGAGCTAGAGGCCGAGCCAAGGGGGAGAGATTGGTGAGTGGGGAGTAGTTTTTCTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCCCTGAAAAAAGGGCTGGTAGTTTCGGTCGAGACCCCCGATTCCTAGGTGAAACATCATCAGTTCTGTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761607             [CAGAGGCCGACCCAAGGGGTGGGTGAGCTAGAGGCCGAGCCAAGGGGGAGAGATTGGTGAGTGGGGAGTAGTTTTTCTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCCCTGAAAAAAGGGCTGGTAGTTTCGGTCGAGACCCCCGATTCCTAGGTGAAACATCATCAGTTCTGTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12036#3 CAGAGGCCGACCCAAGGGGTGGGTGAGCTAGAGGCCGAGCCAAGGGGGAGAGATTGGTGA GTGGGGAGTAGTTTTTCTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCCCTGAAAAAAGG GCTGGTAGTTTCGGTCGAGACCCCCGATTCCTAGGTGAAACATCATCAGTTCTGTTTTTT TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12036#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence
                              [GCTGAGTAGTACTAGTTTTTTAGGGGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]

[+] EMBL CF317397             [GCTGAGTAGTACTAGTTTTTTAGGGGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]


>consensus_12036#4 GCTGAGTAGTACTAGTTTTTTAGGGGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAA CACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG



consensusID : consensus_12036#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 152
fasta sequence
                              [TGACTGGACTGAAGGAGTAGTTCTTGTATGCTGAGTAGTACTAGTTTTTACAGGGCGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF300291             [TGACTGGACTGAAGGAGTAGTTCTTGTATGCTGAGTAGTACTAGTTTTTACAGGGCGCACTGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12036#5 TGACTGGACTGAAGGAGTAGTTCTTGTATGCTGAGTAGTACTAGTTTTTACAGGGCGCAC TGAAAAAAGAGCTTGTAGTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      ------------------------------------------------------------
consensus_12036#2      ------------------------------------------------------------
consensus_12036#0      CCCGTAACATTAACTCCTTTGTTCAGCTTGACACTCCATTGCAGAGGGAGGGTATAGCTG 60
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      -----------------CCCGTAACATTAACTCCTTTGTTCAGCTTGACACTCCATTGCA 43
consensus_12036#2      ------------------------------------------------------------
consensus_12036#0      GTGACAGAGAGAAATGGGCGAGGAGGCCAATTGCAACGTCGCGATGGA--GTCCGCTGCG 118
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      GAGGGAGGGTATAGCTGGTGACAGAGAGAAATGGGCGAGGAGGCCAAGGCCGCCGCCGCC 103
consensus_12036#2      ------------------------------------------------------------
consensus_12036#0      CCCAAGGAGAACGGCCACACCACCGGTGGCGCCGCGGCGGAGGCCAAGGCCGCCGCCGCC 178
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      TGGGCTGAGATCGCCGTCACCGACGCCGCGGCGGTGCCAAAGCCGACGCCGCCGCCTGCG 163
consensus_12036#2      ------------------------------------------------------------
consensus_12036#0      TGGGCTGAGATCGCCGTCACCGACGCCGCGGCGGTGCCAAAGCCGACGCCGCCGCCTGCG 238
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      GCCGTGGCCGTCGACCCCCGGCTTCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCAC 223
consensus_12036#2      ------------------------------------------------------------
consensus_12036#0      GCCGTGGCCGTCGACCCCCGGCTTCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCAC 298
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      TTTCCCAAGCAAGGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTG 283
consensus_12036#2      ------------------------------------------------------------
consensus_12036#0      TTCCCCAAGCAAGGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTG 358
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      TTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGCCGCCGTC 343
consensus_12036#2      ------------------------------------------------------------
consensus_12036#0      TTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGCCGCCGTC 418
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      GCCGGGATTGAGGCTAGGGGGTTCATATTTGGCCCGGCGATCGCGCTGGCAATTGGCGCC 403
consensus_12036#2      ------------------------------------------------------------
consensus_12036#0      GCCGGGATTGAGGCTAGGGGGTTCATATTTGGCCCGGCGATCGCGCTGGCAATTGGCGCC 478
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      AAATTCATACCGTTGCGTAAGCCCAAGAAACTCCCAGGCGAGGTGATTTCTGAGACGTAT 463
consensus_12036#2      -----------------------------------------------------------T 1
consensus_12036#0      AAATTCATACCGTTGCGTAAGCCCAAGAAACTCCCAGGCGAGGTGATTTCTGAGACGTAT 538
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      GTTCTCGAGTACGGGACCGATTGCTTGCAG-ATGCATGTTGGCGCCATTGAACCTGGTGA 522
consensus_12036#2      TTCTTCGAGTACGGG--CCGTTGCTTGCAGGATGCATTGTGG-GCCCTTGAACCTGGTGA 58
consensus_12036#0      GTTCTCGAGTACGGGACCGATTGCTTGCAG-ATGCATGTTGGCGCCATTGAACCTGGTGA 597
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      GCGTGTGCTGATCGTTGATGATCTGGTTGCAACTGGTGGGACACTTTGTGCTGCTATAAG 582
consensus_12036#2      GCGTGTGCTGATCGT-GATGATCTG-TTCCAACTGGTGGGACACTTTGTGCTGCTATAAG 116
consensus_12036#0      GCGTGTGCTGATCGTTGATGATCTGGTTGCAACTGGTGGGACACTTTGTGCTGCTATAAG 657
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      GCTTCTTGAACGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCAAA 642
consensus_12036#2      GCTTCTTGA-CGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCCAA 175
consensus_12036#0      GCTTCTTGAACGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCAAA 717
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      ATTTAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGA 702
consensus_12036#2      ATTTAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGA 235
consensus_12036#0      ATTTAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCCCGCGA 777
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ------------------------------------------------------------
consensus_12036#1      ATATGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTG 762
consensus_12036#2      ATATGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTG 295
consensus_12036#0      ATATGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTG 837
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      ------------------------------------------------------------
consensus_12036#3      ----------------------------------------------------CAGAGGCC 8
consensus_12036#1      CAAGTGAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCT 822
consensus_12036#2      CAAGTGAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCT 355
consensus_12036#0      CAAGTGAGCGCTGGACGGATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCT 897
                                                                                   

consensus_12036#4      ------------------------------------------------------------
consensus_12036#5      -------------------------------------------TGACTGGACTGAAGGAG 17
consensus_12036#3      GACCCAAGGGGTGGGTGAGCTAGAGGCCGAGCCAAGGGGGAGAGATTGGTGAGTGGGGAG 68
consensus_12036#1      GCTAAGTATTAGAGGGGAGGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAG 882
consensus_12036#2      GCTAAGTATTAGAGGGGAGGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAG 415
consensus_12036#0      GCTAAGTATTAGAGGGGAGGTGAGAGAGAGCGAGAGAGAGAGAGATTGGTGAGTGGGGAG 957
                                                                                   

consensus_12036#4      ------------GCTGAGTAGTACTAGTTTTT-TAGGG-GCACTGAAAAAAGAGCTTGTA 46
consensus_12036#5      TAGTTCTTGTATGCTGAGTAGTACTAGTTTTTACAGGGCGCACTGAAAAAAGAGCTTGTA 77
consensus_12036#3      TAGTTTTTCTAGGCTGAGTAGTACTAGTTTTTTCAGGG-GCCCTGAAAAAAGGGCTGGTA 127
consensus_12036#1      TAGTTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGG-GCACTGAAAAAAGAGCTTGTA 941
consensus_12036#2      TAGTTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGG-GCACTGAAAAAAGAGCTTGTA 474
consensus_12036#0      TAGTTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGG-GCACTGAAAAAAGAGCTTGTA 1016
                                   ********************  **** ** ********** *** ***

consensus_12036#4      GTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCAAA 106
consensus_12036#5      GTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCA----------------AAA 121
consensus_12036#3      GTTTCGGTCGAGACCCCCGATTCCTAGGTGAAACATCATCAGTTCTGTTTTTTT---AAA 184
consensus_12036#1      GTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCATT 1001
consensus_12036#2      GTTTCTGTCGGGAACCCCGATTACTAGCTGAAACATCATCAGTTCTGTTCTAAAAAAAAA 534
consensus_12036#0      GTTTCTGTCGGGAACACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCATT 1076
                       ***** **** ** * ****** **** *************                *  

consensus_12036#4      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 166
consensus_12036#5      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------- 152
consensus_12036#3      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 221
consensus_12036#1      GTTGATTAAAATTTCCGT------------------------------------------ 1019
consensus_12036#2      A----------------------------------------------------------- 535
consensus_12036#0      GTTGATTAAAATTTCCGTGGTTTCGATCAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1136
                                                                                   

consensus_12036#4      CCCCTGTCATGCCG 180
consensus_12036#5      --------------
consensus_12036#3      --------------
consensus_12036#1      --------------
consensus_12036#2      --------------
consensus_12036#0      A------------- 1137
                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)