cluster # 12037

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Oryza sativa
cluster # 12037 cluster # 12037 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12037#0 length = 2054 sequences # 8

consensus_12037#1 length = 695 sequences # 1
consensus_12037#2 length = 136 sequences # 1

consensusID : consensus_12037#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2054
fasta sequence

                              [TTCGCTTCCCCCTCCCTTCCGACTCCCCAACGGCGGCGGCGGCGGCGGCGTGGTGCGGCGGCGAGGGTTTTAAGTAGGCTGCGCGGCGGAGAACGCCGGGGACGCGAGCGGAGTGATCTAGCCTTATC-CTCCTTCGTCGCCTCCGGATTGGTTTCGCGGCGGCCGGCCGTGTCTCCTGACTGCGTCTGTGGCCGGGATGAGGGTGAAGGTGATA-TCGCGCTCCACC-GACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTATCATGCATGGCGAAAAACCCCAATTATTTGAAAGCAATATTTTCTGGCTCAATGGATGGGGATATTCGTCTGTGGGACATTGCTGCAAGGAAGACAGTCTGCCAGTTCCCTGGACATCAAGGTGCTGTGAGGGGTTTGGCGACATCTACTGATGGTGATCTTCTAGTATCATGTGGTGTTGACTGCACTGTTCGACTATGGAAAGTCCCTATGCTCAAGATGGTAGACACTAACGATGCTATTGGAGATGCTTCTCAGCCATCAGCGGTCTACACCTGGAAGCATGCGTTTTGGGGTGTTGACCACCAGTGGGATGGCAATCTTTTTGCAACTGTAGGTGCTCAGGTTGATATATGGGATCAAAACAGGTCAGAGCCAATAAATAGCTTTGAATGGGGTAAAGATACAGTTCTGTCCGTGAGATTTAATCCTGGAGAACCTGATGTTCTAATTACATCAGCTAGTGATCGGAGTATAACACTTTATGATCTACGCATGTCATCCCCTGCTAGAAAGCTAATCATGAAGACAAGGTGCAACTCAATATGCTGGAACCCTAGGGAGCCTATGAACTTCACTGCCGTAAGATTTATTTGTTTCCTGTATATGGTGCTGACTGTCGAATGAATTATTTGAACTGTATGCTATAGTTCTGGAGCTTACCTGTCAAGCTTTCCTTACAAATAGTGCAAGCCTAAACTATGTTTTGGTCTTTTTATCATCTAGTAACATCTATCCTGATACTTTTTCTTGCTAGGTAAATGAAGATACAAATTGCTATTCCTTTGATGCTAGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTGATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACAGTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGTGATGATACGAATCTTCGGCTGTGGAAGTCCAAAGCTTCAGAACAGTTGGGAGTTCTTCTTCCAAGAGAACGCAGAAAACAAGAATACCTAGATGCTGTCAAGGAGCGGTATAAGCACCTTCCCGAAGTCAAGCGGATTGTGAGGCATAGGCAC-TTACCTAAGCCAATCTA-CAAGGCG-GCCAACTTAAGGCGAACGAT-GATTGAAGCAGAAAACCGTAAAGAAGAAAGGAGGCGTGCGCACAGT-GCCCCCGGGAGCATGCCTGTGCAGCCCTTCAGGAAGAGAAGAATAATCAAAGAAGTAGAGTAAAATGGAAGAATATGTGTGGCACAAAACCAAACGCCGCGATTTTACAGGTCTAGCTCAAGACGGGGACATGTCTAATCATCCACCAAACCATTCATCGGAGAGTGACGTCTGTTGCAAACAGTGTTTAGAAAGCAGCCCCAGCAGCAGCAGAAATCGAAGGGTCTATGGTTCATCAGTTTATAAAGGGCTGAAATTTTTGCTTCTGCTCAATTTGTTGTATCGTTTTGCTTGTAACGATTTATGTACCTTCTAGTTATGTATCTCGTATTACTTTTCTGATGAGTAACCTGTGTAATAGCTATGTCGAATGGAACAATACATGTG]

[+] EMBL AK111838             [TTCGCTTCCCCCTCCCTTCCGACTCCCCAACGGCGGCGGCGGCGGCGGCGTGGTGCGGCGGCGAGGGTTTTAAGTAGGCTGCGCGGCGGAGAACGCCGGGGACGCGAGCGGAGTGATCTAGCCTTATC CTCCTTCGTCGCCTCCGGATTGGTTTCGCGGCGGCCGGCCGTGTCTCCTGACTGCGTCTGTGGCCGGGATGAGGGTGAAGGTGATA TCGCGCTCCACC GACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTATCATGCATGGCGAAAAACCCCAATTATTTGAAAGCAATATTTTCTGGCTCAATGGATGGGGATATTCGTCTGTGGGACATTGCTGCAAGGAAGACAGTCTGCCAGTTCCCTGGACATCAGGGTGCTGTGAGGGGTTTGGCGACATCTACTGATGGTGATCTTCTAGTATCATGTGGTGTTGACTGCACTGTTCGACTATGGAAAGTCCCTATGCTCAAGATGGTAGACACTAACGATGCTATTGGAGATGCTTCTCAGCCATCAGCGGTCTACACCTGGAAGCATGCGTTTTGGGGTGTTGACCACCAGTGGGATGGCAATCTTTTTGCAACTGTAGGTGCTCAGGTTGATATATGGGATCAAAACAGGTCAGAGCCAATAAATAGCTTTGAATGGGGTAAAGATACAGTTCTGTCCGTGAGATTTAATCCTGGAGAACCTGATGTTCTAATTACATCAGCTAGTGATCGGAGTATAACACTTTATGATCTACGCATGTCATCCCCTGCTAGAAAGCTAATCATGAAGACAAGGTGCAACTCAATATGCTGGAACCCTAGGGAGCCTATGAACTTCACTGCCGTAAGATTTATTTGTTTCCTGTATATGGTGCTGACTGTCGAATGAATTATTTGAACTGTATGCTATAGTTCTGGAGCTTACCTGTCAAGCTTTCCTTACAAATAGTGCAAGCCTAAACTATGTTTTGGTCTTTTTATCATCTAGTAACATCTATCCTGATACTTTTTCTTGCTAGGTAAATGAAGATACAAATTGCTATTCCTTTGATGCTAGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTGATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACAGTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGTGATGATACGAATCTTCGGCTGTGGAAGTCCAAAGCTTCAGAACAGTTGGGAGTTCTTCTTCCAAGAGAACGCAGAAAACAAGAATACCTAGATGCTGTCAAGGAGCGGTATAAGCACCTTCCCGAAGTCAAGCGGATTGTGAGGCATAGGCAC TTACCTAAGCCAATCTA CAAGGCG GCCAACTTAAGGCGAACGAT GATTGAAGCAGAAAACCGTAAAGAAGAAAGGAGGCGTGCGCACAGT GCCCCCGGGAGCATGCCTGTGCAGCCCTTCAGGAAGAGAAGAATAATCAAAGAAGTAGAGTAAAATGGAAGAATATGTGTGGCACAAAACCAAACGCCGCGATTTTACAGGTCTAGCTCAAGACGGGGACATGTCTAATCATCCACCAAACCATTCATCGGAGAGTGACGTCTGTTGCAAACAGTGTTTAGAAAGCAGCCCCAGCAGCAGCAGAAATCGAAGGGTCTATGGTTCATCAGTTTATAAAGGGCTGAAATTTTTGCTTCTGCTCAATTTGTTGTATCGTTTTGCTTGTAACGATTTATGTACCTTCTAGTTATGTATCTCGTATTACTTTTCTGATGAGTAACCTGTGTAATAGCTATGTCGAATGGAACAATACATGTG]
[+] EMBL CB639792             [                                       CGGCGGCGGCGTGGTGCGGCGGCGAGGGTTTTAAGTAGGCTGCGCGGCGGAGAACGCCGGGGACGCGAGCGGAGTGATCTAGCCTTATC CTCCTTCGTCGCCTCCGGATTGGTTTCGCGGCGGCCGGCCGTGTCTCCTGACTGCGTCTGTGGCCGGGATGAGGGTGAAGGTGATA TCGCGCTCCACC GACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTATCATGCATGGCGAAAAACCCCAATTATTTGAAAGCAATATTTTCTGGCTCAATGGATGGGGATATTCGTCTGTGGGACATTGCTGCAAGGAAGACAGTCTGCCAGTTCCCTGGACATCAAGGTGCTGTGAGGGGTTTGGCGACATCTACTGATGGTGATCTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB640666             [                                         GCGGCGGCGTGGTGCGGCGGCGAGGGTTTTAAGTAGGCTGCGCGGCGGAGAACGCCGGGGACGCGAGCGGAGTGATCTAGCCTTATC CTCCTTCGTCGCCTCCGGATTGGTTTCGCGGCGGCCGGCCGTGTCTCCTGACTGCGTCTGTGGCCGGGATGAGGGTGAAGGTGATATTTTTTCTCCACC GACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTCGAGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL C26808               [                                               GCGTGGTGCGGCGGCGAGGGTTTTAAGTAGGCTGCGCGGCGGAGAACG CGGGGACGCGAGCGGAGTGATCTAGCCTTATC CTCCTTCGTCGCCTCCGGATTGGTTTCGCGGCGGCCGGCCGTGTCTCCTGACTGCGTCTGTGGCCGGGATGAGGGTGAAGGTGATA TCGCGCTCCACC GACGAGTTCACGCGGGAGC CAGCCAGGACCTGCAGAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTNAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGATATTTGCTAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB640051             [                                                     TGCGGCGGCGAGGGTTTTAAGTAGGCTGCGCGGCGGAGAACGCCGGGGACGCGAGCGGAGTGATCTAGCCTTATC CTCCTTCGTCGCCTCCGGATTGGTTTCGCGGCGGCCGGCCGTGTCTCCTGACTGCGTCTGTGGCCGGGATGAGGGTGAAGGTGATA TCGCGCTCCACC GACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTATCATGCATGGCGAAAAACCCCAATTATTTGAAAGCAATATTTTCTGGCTCAATGGATGGGGATATTCGTCTGTGGGACATTGCTGCAAGGAAGACAGTCTGCCAGTTCCCTGGACATCAAGGTGCTGTGAGGGGTTTGGCGACATCTACTGATGGTGATCTTCTAGTATCATGTGGTGTTGACTGCACTGTTCGACTATGGAAAGTCCCTATGCTCAAGATGGTAGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB640052             [                                                     TGCGGCGGCGAGGGTTTTAAGTAGGCTGCGCGGCGGAGAACGCCGGGGACGCGAGCGGAGTGATCTAGCCTTATC CTCCTTCGTCGCCTCCGGATTGGTTTCGCGGCGGCCGGCCGTGTCTCCTGACTGCGTCTGTGGCCGGGATGAGGGTGAAGGTGATA TCGCGCTCCACC GACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTATCATGCATGGCGAAAAACCCCAATTATTTGAAAGCAATATTTTCTGGCTCAATGGATGGGGATATTCGTCTGTGGGACATTGCTGCAAGGAAGACAGTCTGCCAGTTCCCTGGACATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB640279             [                                                                                       GGGGAACGCCGGGGACGCCAGCGGAGTGATCTAGCCTTATCGCTCCTTCGTCGCCTCCGGATTGGTTTCGCGGCGGCCGGCCGTGTCTCCTGACTGCGTCTGTGGCCGGGATGAGGGTGAAGGTGATA TCGCGCTCCACCTTATTAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGAAAGTGTTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGATATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM419746             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGCCATAGGCACTTTACCTAACCCAATCTACCAAGGCGCCCCAACTTAAGGCGAACAATGGATTGAAGCAGAAACCCGTAAAGAAGAAAGGAGGCGTGCGCACAGTGGCCCCCGGGAGCATGCCTGTGCAGCCCTTCAGGAAGAGAAGAATAATCAAAGAAGTAGAGTAAAATGGAAGAATATGTGTGGCACAAAACC AACGCCGCGATTTTACAGGTCTAGCTCAAGACGGGGACATGTCTAATCATCCACC AACCATTCATCGGAGAGTGACGTCTGTTGCAAACAGTGTTTAGAAAGCAGCCCCAGCAGCAGCAGAAATCGAAGGGTCTATGGTTCATCAGTTTATAAAGGGCTGAAATTTTTGCTTCTGCTCAATTTGTTGTATCGTTTTGCTTGTAACGATTTATGAACCTTCTAGTTATGTATCTCGTATTACTTTTCTGATGAaaaaaaaaa                                 ]




>consensus_12037#0
TTCGCTTCCCCCTCCCTTCCGACTCCCCAACGGCGGCGGCGGCGGCGGCGTGGTGCGGCG
GCGAGGGTTTTAAGTAGGCTGCGCGGCGGAGAACGCCGGGGACGCGAGCGGAGTGATCTA
GCCTTATCCTCCTTCGTCGCCTCCGGATTGGTTTCGCGGCGGCCGGCCGTGTCTCCTGAC
TGCGTCTGTGGCCGGGATGAGGGTGAAGGTGATATCGCGCTCCACCGACGAGTTCACGCG
GGAGCGCAGCCAGGACCTGCAGAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCA
GGAGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGATATTTGC
TAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTATCATGCATGGCGAAAAA
CCCCAATTATTTGAAAGCAATATTTTCTGGCTCAATGGATGGGGATATTCGTCTGTGGGA
CATTGCTGCAAGGAAGACAGTCTGCCAGTTCCCTGGACATCAAGGTGCTGTGAGGGGTTT
GGCGACATCTACTGATGGTGATCTTCTAGTATCATGTGGTGTTGACTGCACTGTTCGACT
ATGGAAAGTCCCTATGCTCAAGATGGTAGACACTAACGATGCTATTGGAGATGCTTCTCA
GCCATCAGCGGTCTACACCTGGAAGCATGCGTTTTGGGGTGTTGACCACCAGTGGGATGG
CAATCTTTTTGCAACTGTAGGTGCTCAGGTTGATATATGGGATCAAAACAGGTCAGAGCC
AATAAATAGCTTTGAATGGGGTAAAGATACAGTTCTGTCCGTGAGATTTAATCCTGGAGA
ACCTGATGTTCTAATTACATCAGCTAGTGATCGGAGTATAACACTTTATGATCTACGCAT
GTCATCCCCTGCTAGAAAGCTAATCATGAAGACAAGGTGCAACTCAATATGCTGGAACCC
TAGGGAGCCTATGAACTTCACTGCCGTAAGATTTATTTGTTTCCTGTATATGGTGCTGAC
TGTCGAATGAATTATTTGAACTGTATGCTATAGTTCTGGAGCTTACCTGTCAAGCTTTCC
TTACAAATAGTGCAAGCCTAAACTATGTTTTGGTCTTTTTATCATCTAGTAACATCTATC
CTGATACTTTTTCTTGCTAGGTAAATGAAGATACAAATTGCTATTCCTTTGATGCTAGAA
AGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTGATGGACATTGATT
ATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACAGTGCGGATCTTCC
AATATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGGGTGTTTT
GTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGTGATGATACGAATCTTC
GGCTGTGGAAGTCCAAAGCTTCAGAACAGTTGGGAGTTCTTCTTCCAAGAGAACGCAGAA
AACAAGAATACCTAGATGCTGTCAAGGAGCGGTATAAGCACCTTCCCGAAGTCAAGCGGA
TTGTGAGGCATAGGCACTTACCTAAGCCAATCTACAAGGCGGCCAACTTAAGGCGAACGA
TGATTGAAGCAGAAAACCGTAAAGAAGAAAGGAGGCGTGCGCACAGTGCCCCCGGGAGCA
TGCCTGTGCAGCCCTTCAGGAAGAGAAGAATAATCAAAGAAGTAGAGTAAAATGGAAGAA
TATGTGTGGCACAAAACCAAACGCCGCGATTTTACAGGTCTAGCTCAAGACGGGGACATG
TCTAATCATCCACCAAACCATTCATCGGAGAGTGACGTCTGTTGCAAACAGTGTTTAGAA
AGCAGCCCCAGCAGCAGCAGAAATCGAAGGGTCTATGGTTCATCAGTTTATAAAGGGCTG
AAATTTTTGCTTCTGCTCAATTTGTTGTATCGTTTTGCTTGTAACGATTTATGTACCTTC
TAGTTATGTATCTCGTATTACTTTTCTGATGAGTAACCTGTGTAATAGCTATGTCGAATG
GAACAATACATGTG

consensusID : consensus_12037#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [CTTTTGAATGGGGTTAAAGATTACAGTTCTGNCCGTGAGATTTAATCCTGGNAGACCCTGATGTNCTAATTACATCAGGCTAGTGANCGGAGTATAACACTTTATGATCTACGCATGTCATCCCCTGCTAGAAAGCTAATCATGAAGACAAGGTGCAACTCAATATGCTGGAACCCTAGGGANCCTATGAACTTCACTGCCGTAAATGAAGATACAAATTGCTATNCCTTTGATGCTAGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTGATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACAGTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGTGATGATACGAATCTTCGGCTGTGGAAGTCCAAAGCTTCAGAACAGTTGGGAGTTCTTCTTCCAAGAGAACGCAGAAAACAAGAATACCTAGATGCTGTCAAGGAGCGGTATAAGCACCTTCCCGAAGTCAAGCGGATTGTGAGGCATAGGCACTTACCTAAGCCAATCTACAAGGCGGCCAACTTAAGGCGAACGATGATTGAAGCAGAAAACCGTAAAAAAAAAAAAAA]

[+] EMBL C96913               [CTTTTGAATGGGGTTAAAGATTACAGTTCTGNCCGTGAGATTTAATCCTGGNAGACCCTGATGTNCTAATTACATCAGGCTAGTGANCGGAGTATAACACTTTATGATCTACGCATGTCATCCCCTGCTAGAAAGCTAATCATGAAGACAAGGTGCAACTCAATATGCTGGAACCCTAGGGANCCTATGAACTTCACTGCCGTAAATGAAGATACAAATTGCTATNCCTTTGATGCTAGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTGATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACAGTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGTGATGATACGAATCTTCGGCTGTGGAAGTCCAAAGCTTCAGAACAGTTGGGAGTTCTTCTTCCAAGAGAACGCAGAAAACAAGAATACCTAGATGCTGTCAAGGAGCGGTATAAGCACCTTCCCGAAGTCAAGCGGATTGTGAGGCATAGGCACTTACCTAAGCCAATCTACAAGGCGGCCAACTTAAGGCGAACGATGATTGAAGCAGAAAACCGTAAAAAAAAAAAAAA]




>consensus_12037#1
CTTTTGAATGGGGTTAAAGATTACAGTTCTGNCCGTGAGATTTAATCCTGGNAGACCCTG
ATGTNCTAATTACATCAGGCTAGTGANCGGAGTATAACACTTTATGATCTACGCATGTCA
TCCCCTGCTAGAAAGCTAATCATGAAGACAAGGTGCAACTCAATATGCTGGAACCCTAGG
GANCCTATGAACTTCACTGCCGTAAATGAAGATACAAATTGCTATNCCTTTGATGCTAGA
AAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTGATGGACATTGAT
TATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACAGTGCGGATCTTC
CAATATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGGGTGTTT
TGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGTGATGATACGAATCTT
CGGCTGTGGAAGTCCAAAGCTTCAGAACAGTTGGGAGTTCTTCTTCCAAGAGAACGCAGA
AAACAAGAATACCTAGATGCTGTCAAGGAGCGGTATAAGCACCTTCCCGAAGTCAAGCGG
ATTGTGAGGCATAGGCACTTACCTAAGCCAATCTACAAGGCGGCCAACTTAAGGCGAACG
ATGATTGAAGCAGAAAACCGTAAAAAAAAAAAAAA

consensusID : consensus_12037#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 136
fasta sequence

                              [TTTGGTTAACTTCCGTTCTTGCGCCCATTGGTAAACCAGATTTTAATTGGAACCCCCTTTTTCCTTAAGTTATGTATCTCGTATTACTTTTCTGATGAGTAACCTGTGTAATAGCTATGTCGAATGGAACAAAAAA]

[+] EMBL BQ908944             [TTTGGTTAACTTCCGTTCTTGCGCCCATTGGTAAACCAGATTTTAATTGGAACCCCCTTTTTCCTTAAGTTATGTATCTCGTATTACTTTTCTGATGAGTAACCTGTGTAATAGCTATGTCGAATGGAACAAAAAA]




>consensus_12037#2
TTTGGTTAACTTCCGTTCTTGCGCCCATTGGTAAACCAGATTTTAATTGGAACCCCCTTT
TTCCTTAAGTTATGTATCTCGTATTACTTTTCTGATGAGTAACCTGTGTAATAGCTATGT
CGAATGGAACAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12037#0      TTCGCTTCCCCCTCCCTTCCGACTCCCCAACGGCGGCGGCGGCGGCGGCGTGGTGCGGCG 60
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      GCGAGGGTTTTAAGTAGGCTGCGCGGCGGAGAACGCCGGGGACGCGAGCGGAGTGATCTA 120
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      GCCTTATCCTCCTTCGTCGCCTCCGGATTGGTTTCGCGGCGGCCGGCCGTGTCTCCTGAC 180
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      TGCGTCTGTGGCCGGGATGAGGGTGAAGGTGATATCGCGCTCCACCGACGAGTTCACGCG 240
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      GGAGCGCAGCCAGGACCTGCAGAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCA 300
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      GGAGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGATATTTGC 360
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      TAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTATCATGCATGGCGAAAAA 420
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      CCCCAATTATTTGAAAGCAATATTTTCTGGCTCAATGGATGGGGATATTCGTCTGTGGGA 480
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      CATTGCTGCAAGGAAGACAGTCTGCCAGTTCCCTGGACATCAAGGTGCTGTGAGGGGTTT 540
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      GGCGACATCTACTGATGGTGATCTTCTAGTATCATGTGGTGTTGACTGCACTGTTCGACT 600
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      ATGGAAAGTCCCTATGCTCAAGATGGTAGACACTAACGATGCTATTGGAGATGCTTCTCA 660
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      GCCATCAGCGGTCTACACCTGGAAGCATGCGTTTTGGGGTGTTGACCACCAGTGGGATGG 720
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      CAATCTTTTTGCAACTGTAGGTGCTCAGGTTGATATATGGGATCAAAACAGGTCAGAGCC 780
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      AATAAATAGCTTTGAATGGGGT-AAAGAT-ACAGTTCTGTCCGTGAGATTTAATCCTGGA 838
consensus_12037#1      --------CTTTTGAATGGGGTTAAAGATTACAGTTCTGNCCGTGAGATTTAATCCTGGN 52
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      GAACC-TGATGTTCTAATTACATCAG-CTAGTGATCGGAGTATAACACTTTATGATCTAC 896
consensus_12037#1      AGACCCTGATGTNCTAATTACATCAGGCTAGTGANCGGAGTATAACACTTTATGATCTAC 112
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      GCATGTCATCCCCTGCTAGAAAGCTAATCATGAAGACAAGGTGCAACTCAATATGCTGGA 956
consensus_12037#1      GCATGTCATCCCCTGCTAGAAAGCTAATCATGAAGACAAGGTGCAACTCAATATGCTGGA 172
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      ACCCTAGGGAGCCTATGAACTTCACTGCCGTAAGATTTATTTGTTTCCTGTATATGGTGC 1016
consensus_12037#1      ACCCTAGGGANCCTATGAACTTCACTGCCGTAA--------------------------- 205
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      TGACTGTCGAATGAATTATTTGAACTGTATGCTATAGTTCTGGAGCTTACCTGTCAAGCT 1076
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      TTCCTTACAAATAGTGCAAGCCTAAACTATGTTTTGGTCTTTTTATCATCTAGTAACATC 1136
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      TATCCTGATACTTTTTCTTGCTAGGTAAATGAAGATACAAATTGCTATTCCTTTGATGCT 1196
consensus_12037#1      ----------------------------ATGAAGATACAAATTGCTATNCCTTTGATGCT 237
consensus_12037#2      ----------------------------------------TTTGGTTAACTTCCGTTCTT 20
                                                                *** *   * *  * *  *

consensus_12037#0      AGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTGATGGACATT 1256
consensus_12037#1      AGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTGATGGACATT 297
consensus_12037#2      GCGCCCATTGGTAAACCAGATTTTAATTGGAACCCCCTTTTTCCTTAAGTTATGTATCTC 80
                              *** * ** *  *  **  *   **   ** * ** *   *** *** *  * 

consensus_12037#0      G-ATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACAGTGCGGAT 1315
consensus_12037#1      G-ATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACAGTGCGGAT 356
consensus_12037#2      GTATTACTTTTCTGATGAGTA-ACCTGTGTAATAGCTATGTCGAATGGAACAAAAAA--- 136
                       * **** *   *    * *      * *** *  * *   *   ** *****        

consensus_12037#0      CTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGGGT 1375
consensus_12037#1      CTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGGGT 416
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      GTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGTGATGATACGAA 1435
consensus_12037#1      GTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGTGATGATACGAA 476
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      TCTTCGGCTGTGGAAGTCCAAAGCTTCAGAACAGTTGGGAGTTCTTCTTCCAAGAGAACG 1495
consensus_12037#1      TCTTCGGCTGTGGAAGTCCAAAGCTTCAGAACAGTTGGGAGTTCTTCTTCCAAGAGAACG 536
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      CAGAAAACAAGAATACCTAGATGCTGTCAAGGAGCGGTATAAGCACCTTCCCGAAGTCAA 1555
consensus_12037#1      CAGAAAACAAGAATACCTAGATGCTGTCAAGGAGCGGTATAAGCACCTTCCCGAAGTCAA 596
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      GCGGATTGTGAGGCATAGGCACTTACCTAAGCCAATCTACAAGGCGGCCAACTTAAGGCG 1615
consensus_12037#1      GCGGATTGTGAGGCATAGGCACTTACCTAAGCCAATCTACAAGGCGGCCAACTTAAGGCG 656
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      AACGATGATTGAAGCAGAAAACCGTAAAGAAGAAAGGAGGCGTGCGCACAGTGCCCCCGG 1675
consensus_12037#1      AACGATGATTGAAGCAGAAAACCGTAAAAAAAAAAAAAA--------------------- 695
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      GAGCATGCCTGTGCAGCCCTTCAGGAAGAGAAGAATAATCAAAGAAGTAGAGTAAAATGG 1735
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      AAGAATATGTGTGGCACAAAACCAAACGCCGCGATTTTACAGGTCTAGCTCAAGACGGGG 1795
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      ACATGTCTAATCATCCACCAAACCATTCATCGGAGAGTGACGTCTGTTGCAAACAGTGTT 1855
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      TAGAAAGCAGCCCCAGCAGCAGCAGAAATCGAAGGGTCTATGGTTCATCAGTTTATAAAG 1915
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      GGCTGAAATTTTTGCTTCTGCTCAATTTGTTGTATCGTTTTGCTTGTAACGATTTATGTA 1975
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      CCTTCTAGTTATGTATCTCGTATTACTTTTCTGATGAGTAACCTGTGTAATAGCTATGTC 2035
consensus_12037#1      ------------------------------------------------------------
consensus_12037#2      ------------------------------------------------------------
                                                                                   

consensus_12037#0      GAATGGAACAATACATGTG 2054
consensus_12037#1      -------------------
consensus_12037#2      -------------------