cluster # 12044

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Oryza sativa
cluster # 12044 cluster # 12044 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12044#0 length = 2129 sequences # 9

consensus_12044#1 length = 241 sequences # 1

consensusID : consensus_12044#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2129
fasta sequence

                              [GTTGACAGGCGGGGGATGGATTCTGCAGCGTGATTTCATTTGTGCTCCATTTCCTGCTGGTTCGATGCAACTGCTTTGTAACTGTTGATTGATGTGGTGATACATTTCAAAACCAGGGATTAGATTCTGTTTATGCCTATGCTTCATAAATCATAACGATGGCCAGTTCAAGCAAAAACTTCCAGTCATCAAGCAAACCAGGCAGTGACAGGAAGTACCAGGGTGCATTGGTTGCTTCTCCAGCAAAAGCCATTTCACCCAAGACAGTCAAGCAGATCGTGCCAGGAAAACATTTAATCTTGAGCGGGGAGTCTACAAGTCATCTGGCATCTTTTTTGGTAAAGGTTATTGCCTTGGAAGTAGTAAGAAGATTTTCAAAAGCAAGATGCCCTTTTATATGGAATTCTATTCAAGCATTGCAAGTTCTTGGGTACCCTCCATTTAGGTGGATTCAACAGTGGGCGCCACTCAAATTTATTGTGCAAGGCATTCAGAAATTATCGACACCACTGTTGTTTCTTTCTGTCACAACGACATTATGTGACCGGTCCTCTAAGCGCAATGATGAATTGGGTAGCAATACAGAAGCTCCTGATGTACCTTCTGAATCAGATGAAACAGCATCAACTTCTGGTATAAGGGATGTTGCTGATGGCACAAAGGATACCGAGCCAGATAACTGGCTCATATCACTGTTCAAGGAACTTGAGAAACAAGGCATCACTTTGCCTGAAAGGTTCAATGAGGATGAACTACGCAGATTTTACATTGCAGCCAATGGTGACTTTTCAAGTTTGCTCTCTTCAGTTAAGAAGACAATTCGTTGGAGGGAAACCTTCCATATACTTACATTGCACGAACTCGAGAAGTGGTCCCATTTAGTTTTTTGGCATGGATTCGATACTATGCTTCGGCCCTGTTTAATAGTCCGTCTTGGTCTTGCATGCTCTAGTCTAGCCCCTTCTGATAGACCTCGGTTTGGGCAAGCAGTAGTTTCTCAAATCGACAATGGTATTGTATACTTGACCAACAAAGAAGATCCGAGAATAACTGTTTTGCTGGATTGTCATGGGATTTCTCCATTCAGATTTCCAATGCAAATGATGAGGTCGTTTATCACTATAGTTCAAGAAAACTATCCAAATCGTCTTGGGGTACTATTTATTGTGCGTCTTCCTCCTGTTGTCAGAGTAATTGCGCAGACTCTTATTCAGGTTCTGAAACCATCCACAAAGCAGAAGTTGCGTTTTGAGGGAGAATCATATAAGAAGACATTAGCCGAGTTCTTGCAGATTGTGCCAACTTTTCTTGGTGGCAAATGCAGCTGCCCGCAATGTGAGAAGCCGCGTAATATTTCAGTAATACAGGCAGGGGAAGGCAGCAAGAGCCAACCTCGCCAGA-TAACCATTGAT-GATGGATCACCTGTCGCAAGCATGAACTTTG-ATGAGGCGGAGCTTCCATCTCCTTATAGCTGCGAGAATGCCATAAGGGCTGCCATCATTGGTGTTCTAATGCTGTGGGTCTTCATTGCATTTCTCGCTGGGATGAACGACCCAGAGTCCATCTCGTCCCATGCCCCCTAAAGGGCCTTGCATTTTTTTGCCATGTCAACCAGGATCCACAGAACCACCTGAGCTGTCAGTTGTCTTCCATTTGCATCTGTGGTTGCTAGAGGCGTTTTTCATAGCAGATTTTC-GTGGTCTGTACTATGTGCGCCACATGCTAAAGCATCAAAAGA-GTATCTT-CGAGTCGCTCACTGGGAGGT-CATATGAGGTGT-GCGATTCAGCATTACCTTGAAA-TAGTCAGTTAGAACAAGACAATTCCT-TGTTTTGTTTTGGTGCCATCTTAGT-ATATATAGTAGTATTAGTTTGTCTGTAAGTTTGCCGACTTGTCAGTTTATCGTGGGTGGCTATATAGTATCTAGAAGATGGTTCTTACACTTAATACTTCCTGGAAAATTCT-ACGAACGCTACTTG-AAA-ACTGG-AATTTCTCATCTG-AG-AAGCCAGGTCCCTGT-G-CTATGTATGGGT-G-AACGGAGAATCCAGTCTGGTGCTGAACTACTA-ATGAATGAATGCACGTGCTTGTCGAACTCCTAAATAATATCTTTTTTAAATAAAATCTTTCTACATATG]

[+] EMBL AK072450             [GTTGACAGGCGGGGGATGGATTCTGCAGCGTGATTTCATTTGTGCTCCATTTCCTGCTGGTTCGATGCAACTGCTTTGTAACTGTTGATTGATGTGGTGATACATTTCAAAACCAGGGATTAGATTCTGTTTATGCCTATGCTTCATAAATCATAACGATGGCCAGTTCAAGCAAAAACTTCCAGTCATCAAGCAAACCAGGCAGTGACAGGAAGTACCAGGGTGCATTGGTTGCTTCTCCAGCAAAAGCCATTTCACCCAAGACAGTCAAGCAGATCGTGCCAGGAAAACATTTAATCTTGAGCGGGGAGTCTACAAGTCATCTGGCATCTTTTTTGGTAAAGGTTATTGCCTTGGAAGTAGTAAGAAGATTTTCAAAAGCAAGATGCCCTTTTATATGGAATTCTATTCAAGCATTGCAAGTTCTTGGGTACCCTCCATTTAGGTGGATTCAACAGTGGGCGCCACTCAAATTTATTGTGCAAGGCATTCAGAAATTATCGACACCACTGTTGTTTCTTTCTGTCACAACGACATTATGTGACCGGTCCTCTAAGCGCAATGATGAATTGGGTAGCAATACAGAAGCTCCTGATGTACCTTCTGAATCAGATGAAACAGCATCAACTTCTGGTATAAGGGATGTTGCTGATGGCACAAAGGATACCGAGCCAGATAACTGGCTCATATCACTGTTCAAGGAACTTGAGAAACAAGGCATCACTTTGCCTGAAAGGTTCAATGAGGATGAACTACGCAGATTTTACATTGCAGCCAATGGTGACTTTTCAAGTTTGCTCTCTTCAGTTAAGAAGACAATTCGTTGGAGGGAAACCTTCCATATACTTACATTGCACGAACTCGAGAAGTGGTCCCATTTAGTTTTTTGGCATGGATTCGATACTATGCTTCGGCCCTGTTTAATAGTCCGTCTTGGTCTTGCATGCTCTAGTCTAGCCCCTTCTGATAGACCTCGGTTTGGGCAAGCAGTAGTTTCTCAAATCGACAATGGTATTGTATACTTGACCAACAAAGAAGATCCGAGAATAACTGTTTTGCTGGATTGTCATGGGATTTCTCCATTCAGATTTCCAATGCAAATGATGAGGTCGTTTATCACTATAGTTCAAGAAAACTATCCAAATCGTCTTGGGGTACTATTTATTGTGCGTCTTCCTCCTGTTGTCAGAGTAATTGCGCAGACTCTTATTCAGGTTCTGAAACCATCCACAAAGCAGAAGTTGCGTTTTGAGGGAGAATCATATAAGAAGACATTAGCCGAGTTCTTGCAGATTGTGCCAACTTTTCTTGGTGGCAAATGCAGCTGCCCGCAATGTGAGAAGCCGCGTAATATTTCAGTAATACAGGCAGGGGAAGGCAGCAAGAGCCAACCTCGCCAGA TAACCATTGAT GATGGATCACCTGTCGCAAGCATGAACTTTG ATGAGGCGGAGCTTCCATCTCCTTATAGCTGCGAGAATGCCATAAGGGCTGCCATCATTGGTGTTCTAATGCTGTGGGTCTTCATTGCATTTCTCGCTGGGATGAACGACCCAGAGTCCATCTCGTCCCATGCCCCCTAAAGGGCCTTGCATTTTTTTGCCATGTCAACCAGGATCCACAGAACCACCTGAGCTGTCAGTTGTCTTCCATTTGCATCTGTGGTTGCTAGAGGCGTTTTTCATAGCAGATTTTC GTGGTCTGTACTATGTGCGCCACATGCTAAAGCATCAAAAGA GTATCTT CGAGTCGCTCACTGGGAGGT CATATGAGGTGT GCGATTCAGCATTACCTTGAAA TAGTCAGTTAGAACAAGACAATTCCT TGTTTTGTTTTGGTGCCATCTTAGT ATATATAGTAGTATTAGTTTGTCTGTAAGTTTGCCGACTTGTCAGTTTATCGTGGGTGGCTATATAGTATCTAGAAGATGGTTCTTACACTTAATACTTCCTGGAAAATTCT ACGAACGCTACTTG AAA ACTGG AATTTCTCATCTG AG AAGCCAGATCCCTGT G CTATGTATGGGT G AACGGAGAATCCAGTCTGGTGCTGAACTACTA ATGAATGAATGCACGTGCTTGTCGAACTCCTAAATAATATCTTTTTTAAATAAAATCTTTCTACATATG]
[+] EMBL CB641065             [GTTGACAGGCGGGGGATGGATTCTGCAGCGTGATTTCATTTGTGCTCCATTTCCTGCTGGTTCGATGCAACTGCTTTGTAACTGTTGATTGATGTGGTGATACATTTCAAAACCAGGGATTAGATTCTGTTTATGCCTATGCTTCATAAATCATAACGATGGCCAGTTCAAGCAAAAACTTCCAGTCATCAAGCAAACCAGGCAGTGACAGGAAGTACCAGGGTGCATTGGTTGCTTCTCCAGCAAAAGCCATTTCACCCAAGACAGTCAAGCAGATCGTGCCAGGAAAACATTTAATCTTGAGCGGGGAGTCTACAAGTCATCTGGCATCTTTTTTGGTAAAGGTTATTGCCTTGGAAGTAGTAAGAAGATTTTCAAAAGCAAGATGCCCTTTTATATGGAATTCTATTCAAGCATTGCAAGTTCTTGGGTACCCTCCATTTAGGTGGATTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU173871             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTGGAGGGAAACCTTCCATATACTTACATTGCACGAACTCGAGAAGTGGTCCCATTTAGTTTTTTGGCATGGATTCGATACTATGCTTCGGCCCTGTTTAATAGTCCGTCTTGGTCTTGCATGCTCTAGTCTAGCCCCTTCTGATAGACCTCGGTTTGGGCAAGCAGTAGTTTCTCAAATCGACAATGGTATTGTATACTTGACCAACAAAGAAGATCCGAGAATAACTGTTTTGCTGGATTGTCATGGGATTTCTCCATTCAGATTTCCAATGCAAATGATGAGGTCGTTTATCACTATAGTTCAAGAAAACTATCCAAATCGTCTTGGGGTACTATTTATTGTGCGTCTTCCTCCTGTTGTCAGAGTAATTGCGCAGACTCTTATTCAGGTTCTGAAACCATCCACAAAGCAGAAGTTGCGTTTTGAGGGAGAATCATATAAGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C91885               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TATTGTATACTTGACCAACAAAGAAGATCCGAGAATAACTGTTTTGCTGGATTGTCATGGGATTTCTCCATTCAGATTTCCAATGCAAATGATGAGGTCGTTTATCACTATAGTTCAAGAAAACTATCCAAATCGTCTTGGGGTACTATTTATTGTGCGTCTTCCTCCTGTTGTCAGAGTAATTGCGCAGACTCTTATTCAGGTTCTGAAACCATCCACAAAGCAGAAGTTGCGTTTTGAGGGAGAATCATATAAGAAGACATTAGCCGAGTTCTTGCAGATTGTGCCAACTTTTCTTGGTGGCAAATGCAGCTGCCCGCAATGTGAGAAGCCGCGTAATATTTCAGTAATACAGGCAGGGGAAGGCAGCAAGAGCCAACCTCGCCAGATTAACCATTGATGGATGGATCACCTGTCGCAAGCATGAACTTTGNATGAGGCGGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB966992             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ACTATAGTTCAAGAAAACTATCCAAATCGTCTTGGGGTACTATTTATTGTGCGTCTTCCTCCTGTTGTCAGAGTAATTGCGCAGACTCTTATTCAGGTTCTGAAACCATCCACAAAGCAGAAGTTGCGTTTTGAGGGAGAATCATATAAGAAGACATTAGCCGAGTTCTTGCAGATTGTGCCAACTTTTCTTGGTGGCAAATGCAGCTGCCCGCAATGTGAGAAGCCGCGTAATATTTCAGTAATACAGGCAGGGGAAGGCAGCAAGAGCCAACCTCGCCAGA TAACCATTGAT GATGGATCACCTGTCGCAAGCATGAACTTTG ATGAGGCGGAGCTTCCATCTCCTTATAGCTGCGAGAATGCCATAAGGGCTGCCATCATTGGTGTTCTAATGCTGTGGGTCTTCATTGCATTTCTCGCTGGGATGAACGACCCAGAGTCCATCTCGTCCCATGCCCCCTAAAGCGCCTTGCATTTTTTTGCCATATCAATCAGGATCCACAGAACCACCTGAGCTGTCAGTTATCTTCCATTTGCATCTGTGGTTGCTAGAGGCGTTTTTCATAGCAGATTTTC GTGGTCTGTACTATGTGCGCCACATGCTAAAGCATC AAAGA GTATCTT CGAGTCGCTCACTGGGAGGT CATATGAGGTGT GCGATTCAGCATTACCTTGAAA TAGTCAGTT                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CA923314             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTGCGTCTTCCTCCTGTTGTCAGAGTAATTGCGCAGACTCTTATTCAGGTTCTGAAACCATCCACAAAGCAGAAGTTGCGTTTTGAGGGAGAATCATATAAGAAGACATTAGCCGAGTTCTTGCAGATTGTGCCAACTTTTCTTGGTGGCAAATGCAGCTGCCCGCAATGTGAGAAGCCGCGTAATATTTCAGTAATACAGGCAGGGGAAGGCAGCAAGAGCCAACCTCGCCAGA TAACCATTGAT GATGGATCACCTGTCGCAAGCATGAACTTTG ATGAGGCGGAGCTTCCATCTCCTTATAGCTGCGAGAATGCCATAAGGGCTGCCATCATTGGTGTCCTAATGCTGTGGGTCTTCATTGCATTTCTCGCTGGGATGAACGACCCAGAGTCCATCTCGTCCCATGCCCCCTAAAGGGCCTTGCATTTTTTTGCCATGTCAACCAGGATCCACAGAACCACCTGAGCTGTCAGTTGTCTTCCATTTGCATCTGTGGTTGCTAGAGGCGTTTTTCATAGCAGATTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU108216             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gcCCCCCNAAAGGGCCTTGCATTTTTTTGCCATGTCAACCAGGATCCACAGAACCACCTGAGCTGTCAGTTGTCTNCNATTTGCATCTGTGGTTGCTAGAGGCGTTTTTCATAGCAGATTTTC GTGGTCTGTACTATGTGCGCCACATGCTAAAGCATCAAAAGA GTATCTT CGAGTCGCTCACTGGGAGGTCCATATGAGGTGT GCGATTCAGCATTACCTTGAAA TAGTCAGTTAGAACAAGACAATTCCT TGTTTTGTTTTGGTGCCATCTTAGT ATATATAGTAGTATTAGTTTGTCTGTAAGTTTGCCGACTTGTCAGTTTATCGTGGGTGGCTATATAGTATCTAGAAGATGGTTCTTACACTTAATACTTCCTGGAAAATTCT ACGAACGCTACTTG AAA ACTGG AATTTCTCATCTG AG AAGCCAGGTCCCTGT G CTATGTATGGGT G AACGGAGAATCCAGTCTGGTGCTGAACTACTA ATGAATGAATGCACGTGCTTGTCGAAaaaa                                       ]
[+] EMBL AU097370             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTTTCAGTGGTCTGTACTATGTGCGCCACATG TAAAGCATCAAAAGANGTATCTTNCGAGTCGCTCACTGGGAGGT CATATGAGGTGTNGCGATTCAGCATTACCTTGAAANTAGTCAGTTAGAACAAGACAATTCCT TGTTTTGTTTTGGTGCCATCTTAGT ATATATAGTAGTATTAGTTTGTCTGTAAGTTTGCCGACTTGTCAGTTTATCGTGGGTGGCTATATAGTATCTAGAAGATGGTTCTTACACTTAATACTTCCTGGAAAATTCTNACGAACGCTACTTGTAAACACTGGTAATTTCTCATCTGTAGTAAGCCAGGTCCCTGTNGTCTATGTATGGGTNGCAACGGAGAATCCAGTCTGGTGCTGAACTACTATATGAATGAATGCACGTGCTTGTCGAACTCCTAAA                                   ]
[+] EMBL AU033152             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     tcCCTATGTTTTGTTNTGGTNCCATCTTAGTAATATATAGTAGTATTAGTTTGTCTGTAAGTTTNCCGACTTGTCAGTTTATCGTGGGTGGCTATATAGTATCTAGAAGATGGTTCTTACACTTAATACTTCCTGGAAAATTCT ACGAACGCTACTTG AAA ACTGG AATTTCTCATCTG AG AAGCCAGGTCCCTGT G CTATGTATGGGT G AACGGAGAATCCAGTCTGGTGCTGAACTACTA ATGAATGAATGCACGTGCTTGTCGAACTCCTAAAaa                                 ]




>consensus_12044#0
GTTGACAGGCGGGGGATGGATTCTGCAGCGTGATTTCATTTGTGCTCCATTTCCTGCTGG
TTCGATGCAACTGCTTTGTAACTGTTGATTGATGTGGTGATACATTTCAAAACCAGGGAT
TAGATTCTGTTTATGCCTATGCTTCATAAATCATAACGATGGCCAGTTCAAGCAAAAACT
TCCAGTCATCAAGCAAACCAGGCAGTGACAGGAAGTACCAGGGTGCATTGGTTGCTTCTC
CAGCAAAAGCCATTTCACCCAAGACAGTCAAGCAGATCGTGCCAGGAAAACATTTAATCT
TGAGCGGGGAGTCTACAAGTCATCTGGCATCTTTTTTGGTAAAGGTTATTGCCTTGGAAG
TAGTAAGAAGATTTTCAAAAGCAAGATGCCCTTTTATATGGAATTCTATTCAAGCATTGC
AAGTTCTTGGGTACCCTCCATTTAGGTGGATTCAACAGTGGGCGCCACTCAAATTTATTG
TGCAAGGCATTCAGAAATTATCGACACCACTGTTGTTTCTTTCTGTCACAACGACATTAT
GTGACCGGTCCTCTAAGCGCAATGATGAATTGGGTAGCAATACAGAAGCTCCTGATGTAC
CTTCTGAATCAGATGAAACAGCATCAACTTCTGGTATAAGGGATGTTGCTGATGGCACAA
AGGATACCGAGCCAGATAACTGGCTCATATCACTGTTCAAGGAACTTGAGAAACAAGGCA
TCACTTTGCCTGAAAGGTTCAATGAGGATGAACTACGCAGATTTTACATTGCAGCCAATG
GTGACTTTTCAAGTTTGCTCTCTTCAGTTAAGAAGACAATTCGTTGGAGGGAAACCTTCC
ATATACTTACATTGCACGAACTCGAGAAGTGGTCCCATTTAGTTTTTTGGCATGGATTCG
ATACTATGCTTCGGCCCTGTTTAATAGTCCGTCTTGGTCTTGCATGCTCTAGTCTAGCCC
CTTCTGATAGACCTCGGTTTGGGCAAGCAGTAGTTTCTCAAATCGACAATGGTATTGTAT
ACTTGACCAACAAAGAAGATCCGAGAATAACTGTTTTGCTGGATTGTCATGGGATTTCTC
CATTCAGATTTCCAATGCAAATGATGAGGTCGTTTATCACTATAGTTCAAGAAAACTATC
CAAATCGTCTTGGGGTACTATTTATTGTGCGTCTTCCTCCTGTTGTCAGAGTAATTGCGC
AGACTCTTATTCAGGTTCTGAAACCATCCACAAAGCAGAAGTTGCGTTTTGAGGGAGAAT
CATATAAGAAGACATTAGCCGAGTTCTTGCAGATTGTGCCAACTTTTCTTGGTGGCAAAT
GCAGCTGCCCGCAATGTGAGAAGCCGCGTAATATTTCAGTAATACAGGCAGGGGAAGGCA
GCAAGAGCCAACCTCGCCAGATAACCATTGATGATGGATCACCTGTCGCAAGCATGAACT
TTGATGAGGCGGAGCTTCCATCTCCTTATAGCTGCGAGAATGCCATAAGGGCTGCCATCA
TTGGTGTTCTAATGCTGTGGGTCTTCATTGCATTTCTCGCTGGGATGAACGACCCAGAGT
CCATCTCGTCCCATGCCCCCTAAAGGGCCTTGCATTTTTTTGCCATGTCAACCAGGATCC
ACAGAACCACCTGAGCTGTCAGTTGTCTTCCATTTGCATCTGTGGTTGCTAGAGGCGTTT
TTCATAGCAGATTTTCGTGGTCTGTACTATGTGCGCCACATGCTAAAGCATCAAAAGAGT
ATCTTCGAGTCGCTCACTGGGAGGTCATATGAGGTGTGCGATTCAGCATTACCTTGAAAT
AGTCAGTTAGAACAAGACAATTCCTTGTTTTGTTTTGGTGCCATCTTAGTATATATAGTA
GTATTAGTTTGTCTGTAAGTTTGCCGACTTGTCAGTTTATCGTGGGTGGCTATATAGTAT
CTAGAAGATGGTTCTTACACTTAATACTTCCTGGAAAATTCTACGAACGCTACTTGAAAA
CTGGAATTTCTCATCTGAGAAGCCAGGTCCCTGTGCTATGTATGGGTGAACGGAGAATCC
AGTCTGGTGCTGAACTACTAATGAATGAATGCACGTGCTTGTCGAACTCCTAAATAATAT
CTTTTTTAAATAAAATCTTTCTACATATG

consensusID : consensus_12044#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [GTTGACAGGCGGGGGATGGATTCTGCAGCGTGATTTCATTTGTGGTTGGTACGGAAGCCCTAATGCAGCATGTTTGGATTGCTCGTAGGCTCCATTTCCTGCTGGTTCGATGCAACTGCTTTGTAACTGTTGATTGATGTGGTGATACATTTCAAAACAGGGATTAGATTCTGTTTATGCCTATGCTTCATAAATCATAACGATGGCAGTTCAAGAAAAACTTCCAGTNATNAGGAAACCA]

[+] EMBL C26161               [GTTGACAGGCGGGGGATGGATTCTGCAGCGTGATTTCATTTGTGGTTGGTACGGAAGCCCTAATGCAGCATGTTTGGATTGCTCGTAGGCTCCATTTCCTGCTGGTTCGATGCAACTGCTTTGTAACTGTTGATTGATGTGGTGATACATTTCAAAACAGGGATTAGATTCTGTTTATGCCTATGCTTCATAAATCATAACGATGGCAGTTCAAGAAAAACTTCCAGTNATNAGGAAACCA]




>consensus_12044#1
GTTGACAGGCGGGGGATGGATTCTGCAGCGTGATTTCATTTGTGGTTGGTACGGAAGCCC
TAATGCAGCATGTTTGGATTGCTCGTAGGCTCCATTTCCTGCTGGTTCGATGCAACTGCT
TTGTAACTGTTGATTGATGTGGTGATACATTTCAAAACAGGGATTAGATTCTGTTTATGC
CTATGCTTCATAAATCATAACGATGGCAGTTCAAGAAAAACTTCCAGTNATNAGGAAACC
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12044#0      GTTGACAGGCGGGGGATGGATTCTGCAGCGTGATTTCATTTGTG---------------- 44
consensus_12044#1      GTTGACAGGCGGGGGATGGATTCTGCAGCGTGATTTCATTTGTGGTTGGTACGGAAGCCC 60
                       ********************************************                

consensus_12044#0      -----------------------------CTCCATTTCCTGCTGGTTCGATGCAACTGCT 75
consensus_12044#1      TAATGCAGCATGTTTGGATTGCTCGTAGGCTCCATTTCCTGCTGGTTCGATGCAACTGCT 120
                                                    *******************************

consensus_12044#0      TTGTAACTGTTGATTGATGTGGTGATACATTTCAAAACCAGGGATTAGATTCTGTTTATG 135
consensus_12044#1      TTGTAACTGTTGATTGATGTGGTGATACATTTCAAAAC-AGGGATTAGATTCTGTTTATG 179
                       ************************************** *********************

consensus_12044#0      CCTATGCTTCATAAATCATAACGATGGCCAGTTCAAGCAAAAACTTCCAGTCATCAAGCA 195
consensus_12044#1      CCTATGCTTCATAAATCATAACGATGGC-AGTTCAAG-AAAAACTTCCAGTNATNAGG-A 236
                       **************************** ******** ************* ** * * *

consensus_12044#0      AACCAGGCAGTGACAGGAAGTACCAGGGTGCATTGGTTGCTTCTCCAGCAAAAGCCATTT 255
consensus_12044#1      AACCA------------------------------------------------------- 241
                       *****                                                       

consensus_12044#0      CACCCAAGACAGTCAAGCAGATCGTGCCAGGAAAACATTTAATCTTGAGCGGGGAGTCTA 315
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      CAAGTCATCTGGCATCTTTTTTGGTAAAGGTTATTGCCTTGGAAGTAGTAAGAAGATTTT 375
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      CAAAAGCAAGATGCCCTTTTATATGGAATTCTATTCAAGCATTGCAAGTTCTTGGGTACC 435
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      CTCCATTTAGGTGGATTCAACAGTGGGCGCCACTCAAATTTATTGTGCAAGGCATTCAGA 495
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      AATTATCGACACCACTGTTGTTTCTTTCTGTCACAACGACATTATGTGACCGGTCCTCTA 555
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      AGCGCAATGATGAATTGGGTAGCAATACAGAAGCTCCTGATGTACCTTCTGAATCAGATG 615
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      AAACAGCATCAACTTCTGGTATAAGGGATGTTGCTGATGGCACAAAGGATACCGAGCCAG 675
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      ATAACTGGCTCATATCACTGTTCAAGGAACTTGAGAAACAAGGCATCACTTTGCCTGAAA 735
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      GGTTCAATGAGGATGAACTACGCAGATTTTACATTGCAGCCAATGGTGACTTTTCAAGTT 795
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      TGCTCTCTTCAGTTAAGAAGACAATTCGTTGGAGGGAAACCTTCCATATACTTACATTGC 855
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      ACGAACTCGAGAAGTGGTCCCATTTAGTTTTTTGGCATGGATTCGATACTATGCTTCGGC 915
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      CCTGTTTAATAGTCCGTCTTGGTCTTGCATGCTCTAGTCTAGCCCCTTCTGATAGACCTC 975
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      GGTTTGGGCAAGCAGTAGTTTCTCAAATCGACAATGGTATTGTATACTTGACCAACAAAG 1035
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      AAGATCCGAGAATAACTGTTTTGCTGGATTGTCATGGGATTTCTCCATTCAGATTTCCAA 1095
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      TGCAAATGATGAGGTCGTTTATCACTATAGTTCAAGAAAACTATCCAAATCGTCTTGGGG 1155
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      TACTATTTATTGTGCGTCTTCCTCCTGTTGTCAGAGTAATTGCGCAGACTCTTATTCAGG 1215
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      TTCTGAAACCATCCACAAAGCAGAAGTTGCGTTTTGAGGGAGAATCATATAAGAAGACAT 1275
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      TAGCCGAGTTCTTGCAGATTGTGCCAACTTTTCTTGGTGGCAAATGCAGCTGCCCGCAAT 1335
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      GTGAGAAGCCGCGTAATATTTCAGTAATACAGGCAGGGGAAGGCAGCAAGAGCCAACCTC 1395
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      GCCAGATAACCATTGATGATGGATCACCTGTCGCAAGCATGAACTTTGATGAGGCGGAGC 1455
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      TTCCATCTCCTTATAGCTGCGAGAATGCCATAAGGGCTGCCATCATTGGTGTTCTAATGC 1515
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      TGTGGGTCTTCATTGCATTTCTCGCTGGGATGAACGACCCAGAGTCCATCTCGTCCCATG 1575
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      CCCCCTAAAGGGCCTTGCATTTTTTTGCCATGTCAACCAGGATCCACAGAACCACCTGAG 1635
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      CTGTCAGTTGTCTTCCATTTGCATCTGTGGTTGCTAGAGGCGTTTTTCATAGCAGATTTT 1695
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      CGTGGTCTGTACTATGTGCGCCACATGCTAAAGCATCAAAAGAGTATCTTCGAGTCGCTC 1755
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      ACTGGGAGGTCATATGAGGTGTGCGATTCAGCATTACCTTGAAATAGTCAGTTAGAACAA 1815
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      GACAATTCCTTGTTTTGTTTTGGTGCCATCTTAGTATATATAGTAGTATTAGTTTGTCTG 1875
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      TAAGTTTGCCGACTTGTCAGTTTATCGTGGGTGGCTATATAGTATCTAGAAGATGGTTCT 1935
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      TACACTTAATACTTCCTGGAAAATTCTACGAACGCTACTTGAAAACTGGAATTTCTCATC 1995
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      TGAGAAGCCAGGTCCCTGTGCTATGTATGGGTGAACGGAGAATCCAGTCTGGTGCTGAAC 2055
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      TACTAATGAATGAATGCACGTGCTTGTCGAACTCCTAAATAATATCTTTTTTAAATAAAA 2115
consensus_12044#1      ------------------------------------------------------------
                                                                                   

consensus_12044#0      TCTTTCTACATATG 2129
consensus_12044#1      --------------