cluster # 12055

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Oryza sativa
cluster # 12055 cluster # 12055 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12055#0 length = 763 sequences # 9

consensus_12055#1 length = 443 sequences # 1

consensusID : consensus_12055#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 763
fasta sequence

                              [GAGATTGTGCGATCCAGTCCTAATTAATTATACCGTGAGTTGAAAATTAATTAAGATCACTTAAGGTCTTAAAGCTAGCAGCCATGGCGGCATCGTCCAAGTTGGCTTTACTGGTGTTCACTCTCCTGCTCGCCGCCGCTGCTTTCATCCACGTCGCCTCCGCCGAAGAAACACATGACGATCACGACGGCGGCGATCACGACCCGTCGCCATCGCCGCCGGACCACGAGGACCCGTCGCCGTCGCCGCCGGACCACGAGGACGAACCGCCGCCGCCGTCGTCTCCGGGGAAGGAGGACGTCTGCAAAGGCAAGGGGTGCTGCGACTGGTCCGGCGGCGACTGCAAGCACTACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCACAAGTGCTGCTCCAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTAAAAAAAAAAAAAAA]

[+] EMBL AK109082             [GAGATTGTGCGATCCAGTCCTAATTAATTATACCGTGAGTTGAAAATTAATTAAGATCACTTAAGGTCTTAAAGCTAGCAGCCATGGCGGCATCGTCCAAGTTGGCTTTACTGGTGTTCACTCTCCTGCTCGCCGCCGCTGCTTTCATCCACGTCGCCTCCGCCGAAGAAACACATGACGATCACGACGGCGGCGATCACGACCCGTCGCCATCGCCGCCGGACCACGAGGACCCGTCGCCGTCGCCGCCGGACCACGAGGACGAACCGCCGCCGCCGTCGTCTCCGGGGAAGGAGGACGTCTGCAAAGGCAAGGGGTGCTGCGACTGGTCCGGCGGCGACTGCAAGCACTACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCACAAGTGCTGCTCCAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTAtg            ]
[+] EMBL OSR14111A            [              ngntnCTAATTANTTATACCGTGAGTTGAAAATTAATTAAGATCACTTAAGGTCTTAAAGCTAGCAGCCATGGCGGCATCGTCCAAGTTGGCTTTACTGGTGTTCACTCTCCTGCTCGCCGCCGCTGCTTTCATCCACGTCGCCTCCGCCGAAGAAACACATGACGATCACGANGGCGGCGATCACGACCCGTCGCCATCGCCGCCGGACCACGAGGACCCGTCGNCGTCGCCGCCGGACCACGAGGACGAACCGCCGCCGCCGTCGTCTCCGGGGAAGGAGGACGTCTGCAAAGGCAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSR20851A            [                           TTATACCGTGAGTTGAAAATTAATTAAGATCACTTAAGGTCTTAAAGCTAGCAGCCATGGCGGCATCGTCCAAGTTGGCTTTACTGGTGTTCACTCTCCTGCTCGCCGCCGCTGCTTTCATCCACGTCGCCTCCGCCGAAGAAACACATGACGATCACGANGGCGGCGATCACGACCCGTCGCCATCGCCGCCGGACCACGAGGACCCGTCGCCGTCGCCGCCGGACCACGAGGACGAACCGCCGCCGNCGTCGTCTCCGGGGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU162569             [                                                                    TTAAAGCTAGCAGCCATGGCGGCATCGTCCAAGTTGGCTTTACTGGTGTTCACTCTCCTGCTCGCCGCCGCTGCTTTCATCCACGTCGCCTCCGCCGAAGAAACACATGACGATCACGACGGCGGCGATCACGACCCGTCGCCATCGCCGCCGGACCACGAGGACCCGTCGCCGTCGCCGCCGGACCACGAGGACGAACCGCCGCCGCCGTCGTCTCCGGGGAAGGAGGACGTCTGCAAAGGCAAGGGGTGCTGCGACTGGTCCGGCGGCGACTGCAAGCACTACTGCGACGGATACGACGACAAAT                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU184153             [                                                                                                                                                                                                                                                                                                                                              gGGCGACTGCAAGCACTACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCNCAAGTGCTGCTCCAAGTAGCCCGGCCCNCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACNCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTAAAAAAAAAAAAAA ]
[+] EMBL AU184370             [                                                                                                                                                                                                                                                                                                                                                              TACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCACAAGTGCTGCTCCAAGTAGCCCGGCCCNCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTAAAAAAAAAAAAAA ]
[+] EMBL AU070654             [                                                                                                                                                                                                                                                                                                                                                                                                                      CAAGTGCTGCTCCAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTAAAAA          ]
[+] EMBL CA756308             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU184068             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTAAAAAAAAA      ]




>consensus_12055#0
GAGATTGTGCGATCCAGTCCTAATTAATTATACCGTGAGTTGAAAATTAATTAAGATCAC
TTAAGGTCTTAAAGCTAGCAGCCATGGCGGCATCGTCCAAGTTGGCTTTACTGGTGTTCA
CTCTCCTGCTCGCCGCCGCTGCTTTCATCCACGTCGCCTCCGCCGAAGAAACACATGACG
ATCACGACGGCGGCGATCACGACCCGTCGCCATCGCCGCCGGACCACGAGGACCCGTCGC
CGTCGCCGCCGGACCACGAGGACGAACCGCCGCCGCCGTCGTCTCCGGGGAAGGAGGACG
TCTGCAAAGGCAAGGGGTGCTGCGACTGGTCCGGCGGCGACTGCAAGCACTACTGCGACG
GATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCACAAGTGCTGCTCCA
AGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATAC
GACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATC
AATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTAC
GTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGC
CAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAA
TATAATAATAATAATATGATGTGCGTGTAAAAAAAAAAAAAAA

consensusID : consensus_12055#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [TACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCCACAAGTGCTGCTCCCAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTATGTTTGAACGTGAATAAAATTAAAAATAAATTAAAAAAAAAA]

[+] EMBL AU070729             [TACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCCACAAGTGCTGCTCCCAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTATGTTTGAACGTGAATAAAATTAAAAATAAATTAAAAAAAAAA]




>consensus_12055#1
TACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCCACAA
GTGCTGCTCCCAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACT
ATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTC
TTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGC
GTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACA
TGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGT
AACATGATATAATATAATAATAATAATATGATGTGCGTGTATGTTTGAACGTGAATAAAA
TTAAAAATAAATTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12055#0      GAGATTGTGCGATCCAGTCCTAATTAATTATACCGTGAGTTGAAAATTAATTAAGATCAC 60
consensus_12055#1      ------------------------------------------------------------
                                                                                   

consensus_12055#0      TTAAGGTCTTAAAGCTAGCAGCCATGGCGGCATCGTCCAAGTTGGCTTTACTGGTGTTCA 120
consensus_12055#1      ------------------------------------------------------------
                                                                                   

consensus_12055#0      CTCTCCTGCTCGCCGCCGCTGCTTTCATCCACGTCGCCTCCGCCGAAGAAACACATGACG 180
consensus_12055#1      ------------------------------------------------------------
                                                                                   

consensus_12055#0      ATCACGACGGCGGCGATCACGACCCGTCGCCATCGCCGCCGGACCACGAGGACCCGTCGC 240
consensus_12055#1      ------------------------------------------------------------
                                                                                   

consensus_12055#0      CGTCGCCGCCGGACCACGAGGACGAACCGCCGCCGCCGTCGTCTCCGGGGAAGGAGGACG 300
consensus_12055#1      ------------------------------------------------------------
                                                                                   

consensus_12055#0      TCTGCAAAGGCAAGGGGTGCTGCGACTGGTCCGGCGGCGACTGCAAGCACTACTGCGACG 360
consensus_12055#1      --------------------------------------------------TACTGCGACG 10
                                                                         **********

consensus_12055#0      GATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCC-ACAAGTGCTGCTCC 419
consensus_12055#1      GATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCCACAAGTGCTGCTCC 70
                       ********************************************* **************

consensus_12055#0      -AAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTAT 478
consensus_12055#1      CAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTAT 130
                        ***********************************************************

consensus_12055#0      ACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCA 538
consensus_12055#1      ACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCA 190
                       ************************************************************

consensus_12055#0      TCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGT 598
consensus_12055#1      TCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGT 250
                       ************************************************************

consensus_12055#0      ACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGC 658
consensus_12055#1      ACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGC 310
                       ************************************************************

consensus_12055#0      GCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATAT 718
consensus_12055#1      GCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATAT 370
                       ************************************************************

consensus_12055#0      AATATAATAATAATAATATGATGTGCGTGTA-----AAAAAAAAAAAAAA---------- 763
consensus_12055#1      AATATAATAATAATAATATGATGTGCGTGTATGTTTGAACGTGAATAAAATTAAAAATAA 430
                       *******************************      **    ** ****          

consensus_12055#0      -------------
consensus_12055#1      ATTAAAAAAAAAA 443