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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2236 fasta sequence
[AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATACCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAGTAAGGTTTTCTCTTTTTATCTATAGATTGAATGGGGGAGATGCGATGGCCCAAATGCGTGCGAATGTGGGCGCTGGATTTTTGGGCTCATGCTGGCCGCTTGCGTGGGAGATTTAGGGTGCGCTTTCAGTCTATAGGATTAGATTCTTATCGTTTTTCGTTAGCACGCTTTTCAAACTGCTAAATGATGTATTTCGTGGGAAAACTTTCTATAAAGAAGTTGTTTAAAAAAGTCCAACAAATTTATTCATCAAAAATTTATATATTAATACTTAATTAATTATATGTTAATCACATTTCTCGTTTTACATTCGGCTAATCAGCCCATCCTATCTACTGAAACGAGCACACCCTTATTCTAGTCTTCTGCAATTTTTACTATAATACATAGGGTTTCTAAAATTTACACTTAAATTAGACATAAAAGAGCCCTCCGGTGCAGTGATGTGCACATTTATCTTTTACTTTTGGAATGGTGACATCTTGTCCGCGTATTTCATTTGTTATTGTCCCGAACTTCTGCAAAAGACCAAAAGAACCTCGGCATCATTAAAATCTAAACGTTCAAAACCATCCAATTTTCAACCTTTTTGGTTTGGATTCACTACCAGAAAACTTATCTTTTTATCTAATACCCCAAACCACAACTACACCGGATATATTAAGAACCAATACTAAAAAACTCTTTAGTACCGGTTCTAAAAGCCCAAGTCTCCGAAATATATTTAGCACCGGTTTGTGTTATCAACCGGTAATAAAAATACATCTTTAGTATGGGCTGGTAACACTAACCACGACTAAAGTTGTCTTTAGGATTAGTTAAAAAGAAGCATCACTATCCAAGTTAGACGTGTGTAGTAGGTGGGATGGTAACGTGTGTGAAAGGCTGAGATCATGAGAGATCTTGAGTCTAAATCTCACATCCCACATATTTTTTTGCCTTAGTATATATCTTTAGTACCGGTTCATTCTACCGATACTATAAATTAAATAAAGAACCGGTACTGAAGATCATATCTCTCCTAGCGATTAACATAACTCTTGATAGTGATTAACAAATATAACTCTAATTTAGCGATCACGCATAAGGATGAAAGCAATTTCAAAATTTCAAAATTAATAAATGACTTCAAAAACTCCTAAAAAATTACCCTTGCTATAAAGTATTTATATCCTACATAAATGTGTGCTTAAATCTAAAAAAATTTTATTCCTACAAGACAAATAAACTTTGTTTTGTTCTAGAACAAATTTATGTGCATCTTAAATACGGTTTTGTGGAATTTCTATGAGACTATTTCAGCTGTAGGAATGCACTGTGTGAGAGGCACAGGTCACTGGTGGAGAAACCTTTTTTACTCCCAGTTGGTAACCCCCTTTAGTCCTGGATTTCCAACCAGGAGTAGGAATCCGGGACTAAAGATGCCCATCTTTAGTCCCGGTTGAAATAACCGGGACTAAATCTTTAGTCCCGGTTGGTAGCAAAAACCGGGATTAAAGAGAAAGTTCTTTACACCAACCAGGACTAAAGAGGGATAGCGGCAGTCTAGATGGTCCCTTTTCTTTTTTCTTGTTTCTTTTTTATTTTCTCCCGAATCGGGTGGCATTCACATCCCAAATCAAACCCCAAATCCCCAAATCAAAGTAACATCCCAATCCACATCACAAATCTTAAAGTTACTAACATACACAAATCAAATACATCACAAATCCTAAAAAAATTACACACAAATCAAATACATCACAGACTATACATCTCAGACCCATACAATCCATCACAAAATTATACATATTAGTGAAT]
[+] EMBL AK065811 [AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATACCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAGTAAGGTTTTCTCTTTTTATCTATAGATTGAATGGGGGAGATGCGATGGCCCAAATGCGTGCGAATGTGGGCGCTGGATTTTTGGGCTCATGCTGGCCGCTTGCGTGGGAGATTTAGGGTGCGCTTTCAGTCTATAGGATTAGATTCTTATCGTTTTTCGTTAGCACGCTTTTCAAACTGCTAAATGATGTATTTCGTGGGAAAACTTTCTATAAAGAAGTTGTTTAAAAAAGTCCAACAAATTTATTCATCAAAAATTTATATATTAATACTTAATTAATTATATGTTAATCACATTTCTCGTTTTACATTCGGCTAATCAGCCCATCCTATCTACTGAAACGAGCACACCCTTATTCTAGTCTTCTGCAATTTTTACTATAATACATAGGGTTTCTAAAATTTACACTTAAATTAGACATAAAAGAGCCCTCCGGTGCAGTGATGTGCACATTTATCTTTTACTTTTGGAATGGTGACATCTTGTCCGCGTATTTCATTTGTTATTGTCCCGAACTTCTGCAAAAGACCAAAAGAACCTCGGCATCATTAAAATCTAAACGTTCAAAACCATCCAATTTTCAACCTTTTTGGTTTGGATTCACTACCAGAAAACTTATCTTTTTATCTAATACCCCAAACCACAACTACACCGGATATATTAAGAACCAATACTAAAAAACTCTTTAGTACCGGTTCTAAAAGCCCAAGTCTCCGAAATATATTTAGCACCGGTTTGTGTTATCAACCGGTAATAAAAATACATCTTTAGTATGGGCTGGTAACACTAACCACGACTAAAGTTGTCTTTAGGATTAGTTAAAAAGAAGCATCACTATCCAAGTTAGACGTGTGTAGTAGGTGGGATGGTAACGTGTGTGAAAGGCTGAGATCATGAGAGATCTTGAGTCTAAATCTCACATCCCACATATTTTTTTGCCTTAGTATATATCTTTAGTACCGGTTCATTCTACCGATACTATAAATTAAATAAAGAACCGGTACTGAAGATCATATCTCTCCTAGCGATTAACATAACTCTTGATAGTGATTAACAAATATAACTCTAATTTAGCGATCACGCATAAGGATGAAAGCAATTTCAAAATTTCAAAATTAATAAATGACTTCAAAAACTCCTAAAAAATTACCCTTGCTATAAAGTATTTATATCCTACATAAATGTGTGCTTAAATCTAAAAAAATTTTATTCCTACAAGACAAATAAACTTTGTTTTGTTCTAGAACAAATTTATGTGCATCTTAAATACGGTTTTGTGGAATTTCTATGAGACTATTTCAGCTGTAGGAATGCACTGTGTGAGAGGCACAGGTCACTGGTGGAGAAACCTTTTTTACTCCCAGTTGGTAACCCCCTTTAGTCCTGGATTTCCAACCAGGAGTAGGAATCCGGGACTAAAGATGCCCATCTTTAGTCCCGGTTGAAATAACCGGGACTAAATCTTTAGTCCCGGTTGGTAGCAAAAACCGGGATTAAAGAGAAAGTTCTTTACACCAACCAGGACTAAAGAGGGATAGCGGCAGTCTAGATGGTCCCTTTTCTTTTTTCTTGTTTCTTTTTTATTTTCTCCCGAATCGGGTGGCATTCACATCCCAAATCAAACCCCAAATCCCCAAATCAAAGTAACATCCCAATCCACATCACAAATCTTAAAGTTACTAACATACACAAATCAAATACATCACAAATCCTAAAAAAATTACACACAAATCAAATACATCACAGACTATACATCTCAGACCCATACAATCCATCACAAAATTATACATATTAGTGAAT]
consensusID : consensus_12063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1639 fasta sequence
[AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATCCCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGA-GGCGTCAGTACAGGCCAGAAAGCATTT-GCTGGGTGCTCTCACAAATCCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTGTAATTATTATGTTTTGGACGACATTGCTGACAAGGAGTATGAGGGTAGGAGAGCATATATAGCTGACTACCTTGATGCCAAAGGAAGATCTATACTAATCACAAAGCCGAC-AATTA--AGGGGAGAGTTTCAGGGAAGGAGCAGATAAAACACTTTGTATATCTCCTGGAGAGTTTGGCTATGAACTCTGCAGATGAACAAGAAGAACATGTTACTTGGCTGATAGACCTCAGAGGCTGGAGTATATCAAGTACGCCATTATCGACATCCCGTGAATCCATGCACATAGTTCAAAACTACTATCCAGGGATTATTGCAGTAGCAATACTCAGCAACACTCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAGCGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAATGTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATATAGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCAAACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCTATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAAGAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGTTTTAGATGTTATATCAATTAATCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGTTAATCCTTACAGTATGTTTATGTAATCTAATACTACCTCTGTTTTATATTATTAATTGTTGTTGACATTTTTCTAAATCCACCTTCTTTTTAGCTTTGATCAAGATTTGTAGAAAAANTTACCTATNTTTCAATGNAAACAAANAACTTGTC]
[+] EMBL AK065555 [AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATCCCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGA GGCGTCAGTACAGGCCAGAAAGCATTT GCTGGGTGCTCTCACAAATCCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTGTAATTATTATGTTTTGGACGACATTGCTGACAAGGAGTATGAGGGTAGGAGAGCATATATAGCTGACTACCTTGATGCCAAAGGAAGATCTATACTAATCACAAAGCCGAC AATTA AGGGGAGAGTTTCAGGGAAGGAGCAGATAAAACACTTTGTATATCTCCTGGAGAGTTTGGCTATGAACTCTGCAGATGAACAAGAAGAACATGTTACTTGGCTGATAGACCTCAGAGGCTGGAGTATATCAAGTACGCCATTATCGACATCCCGTGAATCCATGCACATAGTTCAAAACTACTATCCAGGGATTATTGCAGTAGCAATACTCAGCAACACTCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAGCGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAATGTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATATAGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCAAACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCTATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAAGAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGTTTTAGATGTTATATCAATTAATCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGTTAATCCTTACAGTATGTTTATGTAATCTAATACTACCTCTGTTTTATATTATTAATTGTTGTTG ]
[+] EMBL CF309568 [AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATCCCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGAGGGCGTCAGTACAGGCCAGAAAGCATTTGGCTGGGTGCTCTCACAAATCCCAAAT ]
[+] EMBL CB669901 [ AGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATCCCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGA GGCGTCAGTACAGGCCAGAAAGCATTT GCTGGGTGCTCTCACAAATCCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTGTAATTATTATGTTTTGGACGACATTGCTGACAAGGAGTATGAGGGTAGGAGAGCATATATAGCTGACTACCTTGATGCCAAAGGAAGATCTATACTAATCACAAAGCCGAC AATTA A ]
[+] EMBL CB650347 [ TTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATCCCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGA GGCGTCAGTACAGGCCAGAAAGCATTT GCTGGGTGCTCTCACAAATCCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTGTAATTATTATGTTTTGGACGACATTGCTGACAAGGAGTATGAGGGTAGGAGAGCATATATAGCTGACTACCTTGATGCCAAAGGAAGATCTATACTAATCACAAg ]
[-] EMBL CB669902 [ AAGATCTATACTAATCACAAAGCCGAC AATTA AGGGGAGAGTTTCAGGGAAGGAGCAGATAAAACACTTTGTATATCTCCTGGAGAGTTTGGCTATGAACTCTGCAGATGAACAAGAAGAACATGTTACTTGGCTGATAGACCTCAGAGGCTGGAGTATATCAAGTACGCCATTATCGACATCCCGTGAATCCATGCACATAGTTCAAAACTACTATCCAGGGATTATTGCAGTAGCAATACTCAGCAACACTCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAGCGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAATGTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATATAGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCAAACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCTATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAAGAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGTTTTAGATGTTATATCAATTAATCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGTTAATCCTTACAGTATGTTTATGTAATCTAATACTACCTCTGTTTTATATTATTAATTGTTGTTGA ]
[-] EMBL CB650348 [ gttGACGAATTAGCAGGGGAGAGTTTCAGGGAAGGAGCAGATAAAACACTTTGTATATCTCCTGGAGAGTTTGGCTATGAACTCTGCAGATGAACAAGAAGAACATGTTACTTGGCTGATAGACCTCAGAGGCTGGAGTATATCAAGTACGCCATTATCGACATCCCGTGAATCCATGCACATAGTTCAAAACTACTATCCAGGGATTATTGCAGTAGCAATACTCAGCAACACTCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAGCGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAATGTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATATAGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCAAACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCTATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAAGAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGTTTTAGATGTTATATCAATTAATCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGTTAATCCTTACAGTATGTTTATGTAATCTAATACTACCTGTGTTTTATATTATTAATTGTTGTTGACATTTTT ]
[+] EMBL CA767513 [ AGGGAAGGAGCAGATAAAACACTTTGTATATCTCCTGGAGAGTTTGGCTATGAACTCTGCAGATGAACAAGAAGAACATGTTACTTGGCTGATAGACCTCAGAGGCTGGAGTATATCAAGTACGCCATTATCGACATCCCGTGAATCCATGCACATAGTTCAAAACTACTATCCAGGGATTATTGCAGTAGCAATACTCAGCAACACTCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAGCGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAATGTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATATAGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCAAACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCTATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAAGAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGGTTTAGATGGTATATCAATTAATCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGNTAATCCTTACAGNATGGTTATGNAATCTAATACTACCTCTGGTTTATATTATTAATTGGTGGTGACATTTTTCTAAATCCACCTTCTTTTTAGCTTTGATCAAGATTTGTAGAAAAANTTACCTATNTTTCAATGNAAACAAANAACTTGTC]
[-] EMBL CF309569 [ TAGCAATACTCAGCAACACTCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAGCGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAATGTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATATAGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCAAACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCTATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAAGAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGTTTTAGATGTTATATCAATTAATCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGTTAATCCTTACAGTATGTTTATGTAATCTAATACTACCTCTGTTTTATATTATTAAaaaa ]
consensusID : consensus_12063#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence
[ACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGAGGCGTCAGTACAGGCCAGAAAGCATTTGCTGGGTGCTCTCACAAATCCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTGTAATTATTATGTTTTGGACGACATTGCTGACAAGGAGTATGAGGGTAGGAGAGCATATATAGCTGACTACCTTGATGCCAAAGGAA]
[+] EMBL AK062790 [ACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGAGGCGTCAGTACAGGCCAGAAAGCATTTGCTGGGTGCTCTCACAAATCCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTGTAATTATTATGTTTTGGACGACATTGCTGACAAGGAGTATGAGGGTAGGAGAGCATATATAGCTGACTACCTTGATGCCAAAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12063#1 AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGA 60
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGA 60
consensus_12063#1 TATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGC 120
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 TATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGC 120
consensus_12063#1 CGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGA 180
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 CGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGA 180
consensus_12063#1 TATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATA 240
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 TATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATA 240
consensus_12063#1 TTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATG 300
consensus_12063#2 -----------------------------------ACCACAAACTAGCTAGGTAACTCTG 25
consensus_12063#0 TTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATG 300
** ** * *** ** **
consensus_12063#1 TTGTTGTCGAGCGCCATCCCCTCCCTCTCCATGAG-CATCTTCTATGGATGCTAAGGTGG 359
consensus_12063#2 --GTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGA 83
consensus_12063#0 TTGTTGTCGAGCGCCATACCCTCCCTCTCCATGAG-CATCTTCTATGGATGCTAAGGTGG 359
*** * * *** * * ** ** * * ** **
consensus_12063#1 GCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGA-GATATGGGTAGAATGAATG 418
consensus_12063#2 GTTTCCTGCTGAAGACT----AGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTC--TG 137
consensus_12063#0 GCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGA-GATATGGGTAGAATGAATG 418
* * **** * *** **** *** *** * * ** * * * * **
consensus_12063#1 AACAGAGATGGATGAAAATAG---------TTCAAGTCCGGGAACT---CCTGGGAAGCC 466
consensus_12063#2 AAGAACTGCAGCAAAAGATAG---------TTCAAGTCCGGGAACT---CCTGGGAAGCC 185
consensus_12063#0 AACAGAGATGGATGAAAGTAAGGTTTTCTCTTTTTATCTATAGATTGAATGGGGGAGATG 478
** * * ** ** ** ** * * ****
consensus_12063#1 TGGCAGCTGAGATGCCGGCATTCTTA----TCAGACACCACCATCC--GCCGTTTCCTAA 520
consensus_12063#2 TGGCAGCTGAGATGCCGGCATTCTTA----TCAGACACCACCATCC--GCCGTTTCCTAA 239
consensus_12063#0 CGATGGCCCAAATGCGTGCGAATGTGGGCGCTGGATTTTTGGGCTCATGCTGGCCGCTTG 538
* ** * **** ** * ** * ** * **
consensus_12063#1 GGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTC---GCTCAAAGAAACTGTCAAGT 577
consensus_12063#2 GGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTC---GCTCAAAGAAACTGTCAAGT 296
consensus_12063#0 CGTGGGAGATTTAGGGTGCGCTTTCAGTCTATAGGATTAGATTCTTATCGTTTTTCGTTA 598
* ** * * * ** ** * * ** * * **
consensus_12063#1 GGAGGCGTCAGTACAGGCCAGA--AAGCATTTGCTGGGTG---CTCTCACAAAT------ 626
consensus_12063#2 GGAGGCGTCAGTACAGGCCAGA--AAGCATTTGCTGGGTG---CTCTCACAAAT------ 345
consensus_12063#0 GCACGCTTTTCAAACTGCTAAATGATGTATTTCGTGGGAAAACTTTCTATAAAGAAGTTG 658
* * ** * * ** * * * * **** **** * * ***
consensus_12063#1 CCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTG 686
consensus_12063#2 CCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTG 405
consensus_12063#0 TTTAAAAAAGTCCAACAAATTTATTCATCAAAAATTTATATATTAATACTTAATTAATTA 718
*** * ** * ** * ** * * * * *** * ***** **
consensus_12063#1 TA-ATTATT---ATGTTTTGGACGACATT--GCTGACAAGGAG----TATGAGGGTAGGA 736
consensus_12063#2 TA-ATTATT---ATGTTTTGGACGACATT--GCTGACAAGGAG----TATGAGGGTAGGA 455
consensus_12063#0 TATGTTAATCACATTTCTCGTTTTACATTCGGCTAATCAGCCCATCCTATCTACTGAAAC 778
** *** * ** * * * ***** *** * ** *** *
consensus_12063#1 GAGCATA-------TATAGCTGACTAC----CTTGATGCCAAAGGAAGATCTATACTAAT 785
consensus_12063#2 GAGCATA-------TATAGCTGACTAC----CTTGATGCCAAAGGAA------------- 491
consensus_12063#0 GAGCACACCCTTATTCTAGTCTTCTGCAATTTTTACTATAATACATAGGGTTTCTAAAAT 838
***** * * *** ** * ** * * * *
consensus_12063#1 CACAAAGCCGACAATTAAGGGGAGAGTTTCAGGGAAGGAGCAGATAAAACACTTTGTATA 845
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 TTACACTTAAATTAGACATAAAAGAGCCCTCCGGTGCAGTGATGTGCACATTTATCTTTT 898
consensus_12063#1 TCTCCTGGAGAGTTTGGCTATGAACTCTGCAGATGAACAAGAAGAACATGTTACTTGGCT 905
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 ACTTTTGGAATGGTGACATCTTGTCCGCGTATTTCATTTGTTATTGTCCCGAACTTCTGC 958
consensus_12063#1 GATAGACCTCAGAGGCTGGAGTATATCAAGTACGCCATTATCGACATCCCGTGAATCC-- 963
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 AAAAGACCAAAAGAACCTCGGCATCATTAAAATCTAAACGTTCAAAACCATCCAATTTTC 1018
consensus_12063#1 -ATGCACATAGTTCAAAACTACTATCCAGGGATTATTGCAGTAGCAATACTCAGCAACAC 1022
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 AACCTTTTTGGTTTGGATTCACTACCAGAAAACTTATCTTTTTATCTAATACCCCAAACC 1078
consensus_12063#1 TCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAG 1082
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 ACAACTACACCGGATATATTAAGAACCAATACTAAAAAACTCTTTAGTACCGGTTCTAAA 1138
consensus_12063#1 CGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAAT 1142
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 AGCCCAAGTCTCCGAAATATAT-TTAGCACCGGTTTGTGTTATCAACCGGTAATAAAAAT 1197
consensus_12063#1 GTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATAT 1202
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 ACATCTTTAGTATGGGCTGGTAACACTAACCACGACTAAAGTTGTCTTTAGGATTAGTTA 1257
consensus_12063#1 AGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCA 1262
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 AAAAGA--AGCATCACTATCCAAGTTAGACGTGTGTAGTAGGTGGGATGGTAACGTGTGT 1315
consensus_12063#1 AACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCT 1322
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 GAAAGGCTGAGATCATGAGAGATCTTGAGTCTAAATCTCACATCCC-----ACATATTTT 1370
consensus_12063#1 ATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAA 1382
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 TTTGCCTTAGTATATATCTTTAGTACCGGTTCATTCTACCGATACTATAAATTAAATAAA 1430
consensus_12063#1 GAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGTTTTAGATGTT-ATATCAATTAA 1441
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 GAACCGGTACTGAAGATCATATCTCTCCTAGCGATTAACATAACTCTTGATAGTGATTAA 1490
consensus_12063#1 TCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGTT---AATCCTTACA 1498
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 CAAATATAACTCTAATTTAGCGATCACGCATAAGGATGAAAGCAATTTCAAAATTTCAAA 1550
consensus_12063#1 GTATGTTTATGTAATCTAATACTACCTCTGTTTTATA-TTATTAATTGTTGTTGACATTT 1557
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 ATTAATAAATGACTTCAAAAACTCCTAAAAAATTACCCTTGCTATAAAGTATTTATATCC 1610
consensus_12063#1 TTC-TAAATCCAC-CTTCTTTTTAGCTTTGATCAAGATTTGTAGAAAAANTTACCTATNT 1615
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 TACATAAATGTGTGCTTAAATCTAAAAAAATTTTATTCCTACAAGACAAATAAACTTTGT 1670
consensus_12063#1 TTCAATGNAAACAAANAACTTGTC------------------------------------ 1639
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 TTTGTTCTAGAACAAATTTATGTGCATCTTAAATACGGTTTTGTGGAATTTCTATGAGAC 1730
consensus_12063#1 ------------------------------------------------------------
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 TATTTCAGCTGTAGGAATGCACTGTGTGAGAGGCACAGGTCACTGGTGGAGAAACCTTTT 1790
consensus_12063#1 ------------------------------------------------------------
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 TTACTCCCAGTTGGTAACCCCCTTTAGTCCTGGATTTCCAACCAGGAGTAGGAATCCGGG 1850
consensus_12063#1 ------------------------------------------------------------
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 ACTAAAGATGCCCATCTTTAGTCCCGGTTGAAATAACCGGGACTAAATCTTTAGTCCCGG 1910
consensus_12063#1 ------------------------------------------------------------
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 TTGGTAGCAAAAACCGGGATTAAAGAGAAAGTTCTTTACACCAACCAGGACTAAAGAGGG 1970
consensus_12063#1 ------------------------------------------------------------
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 ATAGCGGCAGTCTAGATGGTCCCTTTTCTTTTTTCTTGTTTCTTTTTTATTTTCTCCCGA 2030
consensus_12063#1 ------------------------------------------------------------
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 ATCGGGTGGCATTCACATCCCAAATCAAACCCCAAATCCCCAAATCAAAGTAACATCCCA 2090
consensus_12063#1 ------------------------------------------------------------
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 ATCCACATCACAAATCTTAAAGTTACTAACATACACAAATCAAATACATCACAAATCCTA 2150
consensus_12063#1 ------------------------------------------------------------
consensus_12063#2 ------------------------------------------------------------
consensus_12063#0 AAAAAATTACACACAAATCAAATACATCACAGACTATACATCTCAGACCCATACAATCCA 2210
consensus_12063#1 --------------------------
consensus_12063#2 --------------------------
consensus_12063#0 TCACAAAATTATACATATTAGTGAAT 2236
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||