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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 887 fasta sequence
[ATCCGCGAAGCTACCAAACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC-TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA-GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT-GAAGGTGC-TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC--ACGCTGACGCACAGCGAC-GTGA-CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAAGGAGCTCCCCGTGGTTCTGAAGGCGTTCGTCCACGGCGACGGCAACCTGTTCAGCCGGCACCCGGAGCTGGAGGAGGCCACGGTGTGGGTCTACTTCCACTCCAACCTCCCACGCTTCAACCGCGTCGAGTGCTGGGGCCCGCTCCGCGACGCCGGAGCGCCGCCCGAGG]
[+] EMBL AK105810 [ATCCGCGAAGCTACCAAACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAAGGAGCTCCCCGTGGTTCTGAAGGCGTTCGTCCACGGCGACGGCAACCTGTTCAGCCGGCACCCGGAGCTGGAGGAGGCCACGGTGTGGGTCTACTTCCACTCCAACCTCCCACGCTTCAACCGCGTCGAGTGCTGGGGCCCGCTCCGCGACGCCGGAGCGCCGCCCGAGG]
[+] EMBL CB648617 [ TACCACCCCTAACCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAAGGAGCTCCCCGTGGTTCTGAAGGCGTTCGTCCACGGCGACGGCAACC ]
[+] EMBL C28711 [ CCAAACCGAGCCAAAATTTTNATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGCTTGCCACAACTNTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA G ]
[+] EMBL AU070253 [ ACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGT ]
[+] EMBL AU162646 [ ACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCNGCCGCTACGTCGTGCCGAGGGCGAGGGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCTGGAAGGTGCTTGTTtnct ]
[+] EMBL CB664635 [ AGCCACAATTTTGATCAATCGATCTGGCGGCCGGAGTCTTTGTTGAGGCGTGCTAGGCTCGTGCTTTCGCCAAGAGGGATTAATTAGCCTCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGGTAGCTATGACTAACAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCATCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGGTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGTAATCTTCGAGGCGTCCAAGCT GAAGGTGC TGTTCCTGGGGGTGGACAAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAACGGGACGAGGTGGTGGCGGAGTGGAAGAAAGTGCAGGGCCACATGTCTCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCTAGCTCATCGCCGGACTCCGCTACTACATCTTCCGCAAGG ]
[+] EMBL CB676753 [ agcccttTTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCATGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAAGGAGCTCCC ]
[+] EMBL C73773 [ TAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGNCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGNCGNCGNCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTNCCGCGGACGTACAAAGGTTGACGGACANGGACGGTGACCGGCGAaggntta ]
[+] EMBL AU174500 [ TGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCG ]
consensusID : consensus_12069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence
[NGNANGCANGACATNGCTGCTGCTACTTCGACCATNTCCCTNCTTCCTCCCATCACCCAGCAGCAGCGNTNGCACNCCNCGACTCCCTCGTCGTCCTCNCCTCCCGCTGCCACAACTCTCGCCGCCGCCGCCNCTNCCGCTACGTCGTGCCGAGGGGAGGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCTGAAGGTGCTGTTCCTNGGGGTTGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTACACGCTTGACGCACAGCACGTTGACGGCGAGGCTTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGATTNCAGGGGGTGGTACAACAAGCTTCANGGTGACGAGGTGGTTGCTGAGTGGAAGAAGGTNCAGGGCACATGTTGTTTAC]
[+] EMBL OSC750 [NGNANGCANGACATNGCTGCTGCTACTTCGACCATNTCCCTNCTTCCTCCCATCACCCAGCAGCAGCGNTNGCACNCCNCGACTCCCTCGTCGTCCTCNCCTCCCGCTGCCACAACTCTCGCCGCCGCCGCCNCTNCCGCTACGTCGTGCCGAGGGGAGGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCTGAAGGTGCTGTTCCTNGGGGTTGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTACACGCTTGACGCACAGCACGTTGACGGCGAGGCTTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGATTNCAGGGGGTGGTACAACAAGCTTCANGGTGACGAGGTGGTTGCTGAGTGGAAGAAGGTNCAGGGCACATGTTGTTTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12069#0 ATCCGCGAAGCTACCAAACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCT 60
consensus_12069#1 ------------------------------------------------------------
consensus_12069#0 TTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAG 120
consensus_12069#1 ------------------------------------------------------------
consensus_12069#0 CATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGT 180
consensus_12069#1 ------------------------------------------------------------
consensus_12069#0 TGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAG- 239
consensus_12069#1 --------------------------------------------------NGNANGCANG 10
* ***
consensus_12069#0 ACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGT 299
consensus_12069#1 ACATNGCTGCTGCTACTTCGACCATNTCCCTNCTTCCTCCCATCACCCAGCAGCAGCGNT 70
**** ******************** ***** ************************** *
consensus_12069#0 GGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGCTGCCACAACTCTCGCCGCCGCC 359
consensus_12069#1 NGCACNCCNC-GACTCCCTCGTCGTCCTCNCCTCCCGCTGCCACAACTCTCGCCGCCGCC 129
**** ** * ****************** ******************************
consensus_12069#0 GCCGCTGCCGCTACGTCGTGCCGAGGGCGAGGCTGTTCGGGCCGGCGATCTTCGAGGCGT 419
consensus_12069#1 GCCNCTNCCGCTACGTCGTGCCGAGGG-GAGGCTGTTCGGGCCGGCGATCTTCGAGGCGT 188
*** ** ******************** ********************************
consensus_12069#0 CGAAGCTGAAGGTGCTGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGC 479
consensus_12069#1 CGAAGCTGAAGGTGCTGTTCCTNGGGGTTGACGAGGAGAAGCACCAGCACCCGGGGAAGC 248
********************** ***** *******************************
consensus_12069#0 TGCCGCGGACGTACACGCT-GACGCACAGCGACGTGACGGCGAGGCT-GACGCTGGCGGT 537
consensus_12069#1 TGCCGCGGACGTACACGCTTGACGCACAGCACGTTGACGGCGAGGCTTGACGCTGGCGGT 308
******************* ********** ************* ************
consensus_12069#0 GTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGA 597
consensus_12069#1 GTCGCACACCATCAACCGGGCG-ATTNCAGGGGGTGGTACAACAAGCTTCANGGTGACGA 367
********************** * ****************** ** * *****
consensus_12069#0 GGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACAT 657
consensus_12069#1 GGTGGTTGCTGAGTGGAAGAAGGTNCAGGGC-ACATGTTGTT-TAC-------------- 411
****** ** ************** ****** ****** * * **
consensus_12069#0 CTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAA 717
consensus_12069#1 ------------------------------------------------------------
consensus_12069#0 GGAGCTCCCCGTGGTTCTGAAGGCGTTCGTCCACGGCGACGGCAACCTGTTCAGCCGGCA 777
consensus_12069#1 ------------------------------------------------------------
consensus_12069#0 CCCGGAGCTGGAGGAGGCCACGGTGTGGGTCTACTTCCACTCCAACCTCCCACGCTTCAA 837
consensus_12069#1 ------------------------------------------------------------
consensus_12069#0 CCGCGTCGAGTGCTGGGGCCCGCTCCGCGACGCCGGAGCGCCGCCCGAGG 887
consensus_12069#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||