cluster # 1208

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Oryza sativa
cluster # 1208 cluster # 1208 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1208#0 length = 448 sequences # 1

consensus_1208#1 length = 445 sequences # 1

consensusID : consensus_1208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [GAGAAAATAATCCACCTGAAAGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCACGATAATTATTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGATAGGTTTAATAATGAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGTATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTG]

[+] EMBL CB640199             [GAGAAAATAATCCACCTGAAAGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCACGATAATTATTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGATAGGTTTAATAATGAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGTATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTG]




>consensus_1208#0
GAGAAAATAATCCACCTGAAAGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATG
GGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCACGATAATTATTTT
TAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGC
GAAATTTATGGGATTCAGCAATACCGAGATAGGTTTAATAATGAGTACCTTTGGTATTGC
GGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAAT
GATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGTATCCACC
GCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTG
GTCGGTGTCGATTAAAGCTGCATCGTTG

consensusID : consensus_1208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence

                              [CCCCATGTAGCTCGTTGCCACCAGCGACATGCCATACATTCCGGTCAGATAGTTGGTGGAGTAACTCAGAATGGCGTAGATGGTGAAGACGCCAAAAATCACCATGCTGCAATACCAGGTGGTGCTGATACGCAAAACGGCCAGGATGTCGCTAAGCTGGAATTTTTGTTTTTCTTCGNTATTGGCACTGCGCAGGTTGTTGTTATTCGCTACATAAAACCAGCACATAATCCCCAACAAGATGTAAACCACACTATAGATGATAATGACCGTTTTCAGGCTGGTGCTGTCATCCGGTGCAAAGCGAGAAAAGACCCACATGGTAAACACCGCCAGCGACATTACACCGACGCCGCGCAGCCCTTCCATCCAGCCCATAATTTTCCCTTGCTCGCTATGATCGCCAAGCAACGATGCAGCTTTAATCGACACCGACCACAGCATT]

[+] EMBL CF306163             [CCCCATGTAGCTCGTTGCCACCAGCGACATGCCATACATTCCGGTCAGATAGTTGGTGGAGTAACTCAGAATGGCGTAGATGGTGAAGACGCCAAAAATCACCATGCTGCAATACCAGGTGGTGCTGATACGCAAAACGGCCAGGATGTCGCTAAGCTGGAATTTTTGTTTTTCTTCGNTATTGGCACTGCGCAGGTTGTTGTTATTCGCTACATAAAACCAGCACATAATCCCCAACAAGATGTAAACCACACTATAGATGATAATGACCGTTTTCAGGCTGGTGCTGTCATCCGGTGCAAAGCGAGAAAAGACCCACATGGTAAACACCGCCAGCGACATTACACCGACGCCGCGCAGCCCTTCCATCCAGCCCATAATTTTCCCTTGCTCGCTATGATCGCCAAGCAACGATGCAGCTTTAATCGACACCGACCACAGCATT]




>consensus_1208#1
CCCCATGTAGCTCGTTGCCACCAGCGACATGCCATACATTCCGGTCAGATAGTTGGTGGA
GTAACTCAGAATGGCGTAGATGGTGAAGACGCCAAAAATCACCATGCTGCAATACCAGGT
GGTGCTGATACGCAAAACGGCCAGGATGTCGCTAAGCTGGAATTTTTGTTTTTCTTCGNT
ATTGGCACTGCGCAGGTTGTTGTTATTCGCTACATAAAACCAGCACATAATCCCCAACAA
GATGTAAACCACACTATAGATGATAATGACCGTTTTCAGGCTGGTGCTGTCATCCGGTGC
AAAGCGAGAAAAGACCCACATGGTAAACACCGCCAGCGACATTACACCGACGCCGCGCAG
CCCTTCCATCCAGCCCATAATTTTCCCTTGCTCGCTATGATCGCCAAGCAACGATGCAGC
TTTAATCGACACCGACCACAGCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1208#0      ----GAGAAAATAAT--CCACCTGAAAGGCGGCTTACTTTTCTCTT------TTTTTTGT 48
consensus_1208#1      CCCCATGTAGCTCGTTGCCACCAGCGACATGCCATACATTCCGGTCAGATAGTTGGTGGA 60
                            * *  *  *  ***** *  *   * * *** ** *  *       **  * * 

consensus_1208#0      CTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAAC-CCTCA 107
consensus_1208#1      GTAACTCAGAATGGCGTA-GATGGTGAAGACGCCAAAAATCACCATGCTGCAATACCAGG 119
                       **   ** *  **  ** ***    ** **  *  * *** ** *     **  **   

consensus_1208#0      CGATAATTATTTTTAG--CGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTA 165
consensus_1208#1      TGGTGCTGATACGCAAAACGGCCAGGATGTCGCTAAGCTGGAATTTTTGTTTT---TCTT 176
                       * *  * **    *   ****   * *       * ****  * ***   **   * * 

consensus_1208#0      TCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGATAG-GTTTAATAATGA 224
consensus_1208#1      CGNTATTGGCACTGCGCAGGTTGTTGTTATTCGCTACATAAAACCAGCACATAATCCCCA 236
                          ***  **  *** *  ** * *   *  ** * *   *   **    ****    *

consensus_1208#0      GTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAAT 284
consensus_1208#1      ACAAGATGTAAACCACA-CTATAGATGATAATGACCGTTTTCAGGCTGGTGCTG-TCATC 294
                        *   *    *   *  * **   *  * *** **        * *  *** * * *  

consensus_1208#0      TTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGG-ATTACTGGGTCTGTTA 343
consensus_1208#1      CGGTGCAAAGCGAGA-AAAGACCCACATGGTAAACACCGCCAGCGACATTACACCGACGC 353
                           **  ** * *  *  **   *  * * * **   ** *    * *    *     

consensus_1208#0      ATGGCAACGTATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACG 403
consensus_1208#1      CGCGCAGCCCTTCCATC-CAGCCCATAATTTTCCCT-TGCTCGCTATGATCGCCA-AGCA 410
                         *** *   **** * * *    ****  **  * * *         * ** * * * 

consensus_1208#0      ACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTG 448
consensus_1208#1      ACGATGC---AGCTTTAATCGACACCGACCACAGCATT------- 445
                      *****      *** *  ***    ***  * ***