|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1727 fasta sequence
[CAAAAAATAATTCGGGCAGGATCTCCCCGAGGCCCCCGTCCCCTCCTCGTCGACTCCCGTCTCGTCTCCTCGCGAGTTCACCTGCCGTCTGCGCCGATCTCCGATTCTCTATCCGGCGAGCAGGGGGACGCCGCCGTCCTGCTGTTTCCGCCGCATCCTGGTTTGGGAGGTTCAACTGAGCCCCCATGTCGCAGGAGAGGAGCCAGTCGCAGAGCCCCCGGTCGCCGGCGTCGGCGGCTGGGGTGCCGTTCCTGTCGATCTCCGTCACAGATCCTGTGAAGATGGGTACCGGAGTCCAGGCCTACATCTCCTATCGCGTCATCACCAAGACCAACCTGCCTGACTTTGAGGGGCAAGAGAAAATTGTTATCCGGCGCTATAGTGACTTTGAGTGGTTGCATGATCGTCTTGCTGAGAAGTACAAAGGCATTTTTATACCTCCCCTTCCAGAGAAGAATGCTGTTGAAAAATTCCGGTTTAGCAAAGAGTTCATTGAATTACGGCGTCAAGCCCTGGATCTATTTGTCAATAGAATAGCTTCACATCCTGAACTCAAGCAAAGTGGAGATTTGAAGATATTTTTGCAGGCAGATGAAGAGAAAATGGATAGAGAAAGGTCTTATGAAACTGGTATATTCAAGAAGCCTTCTGATTTCTTACAGATGTTTAAGGATGTACAATCAAAAGTCAGTGATGTTGTTCTGGGAAAAGAAAAGCCTGTGGAGGAATCTAGTCCTGAATATGAAAAGCTTAAAAATTACATATTTGAGCTAGAAAACCATTTAGCAGAGGCACAGAAACAAGCATTCCGTCTTGTGAAAAGACACCGAGAACTTGGGCAATCTTTGGC-GGACTTTGGTAAGGCTATTAAGCTTTTAGGTGCTTGCGAAGGGGACTCCTTGGAAAAAGTTTTTTCAGAAGTTGGATCAAAGTCAGAGATGTTATCAGTAAAGCTGCAAAGAGAGGCAGACAACCTTCTCTTTAACTTTGAAGAGCCTTTGAAAGATTATGTACGTGCTGTGCAGTCAATAAAAGCAACTATGGTGGATCGAGCCAATGCTTTCAGGCAGCATCATGATTTATTTCAGCAGAAGGAATATAAAGGGGTTAATCTCGAAAAATTGAAGTTCGTGAACCCTGATAAATTTTCTGAACTAGAA-GCTGAGGTCCGAGAGTTGACAGCAGACAGTGAG-GAGGCTA-CAAAGAGGTTTGAGCACATAGTTGCAGTAAT-GAATGAAGAGCTTGCACGTTTCCAAGAGCAGAAAACAGCTGATATT-GGATTC-GCATTCCAT-GAATTT-GCCAAAGGCCAAGCA-AAGTTAGCTAAAGATATTGCTGATGCATGGCGAGGCGTCCTCCCAAAGCTCGAAGCCTGTTCCACTTCATAAATGCTCCGTGTTAGCTTATGTTGTTTGGT-TTAGTGGTTGACAATCGGCGAGTTTTAGGCTGTTTTTTCCCCAGGCCA-CCTTGACACCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATACAATTGACATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATATCTCAAGAATGATGCAGTAAAGGGAAAATAAACTTTAATTTGGTACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK120353 [CAAAAAATAATTCGGGCAGGATCTCCCCGAGGCCCCCGTCCCCTCCTCGTCGACTCCCGTCTCGTCTCCTCGCGAGTTCACCTGCCGTCTGCGCCGATCTCCGATTCTCTATCCGGCGAGCAGGGGGACGCCGCCGTCCTGCTGTTTCCGCCGCATCCTGGTTTGGGAGGTTCAACTGAGCCCCCATGTCGCAGGAGAGGAGCCAGTCGCAGAGCCCCCGGTCGCCGGCGTCGGCGGCTGGGGTGCCGTTCCTGTCGATCTCCGTCACAGATCCTGTGAAGATGGGTACCGGAGTCCAGGCCTACATCTCCTATCGCGTCATCACCAAGACCAACCTGCCTGACTTTGAGGGGCAAGAGAAAATTGTTATCCGGCGCTATAGTGACTTTGAGTGGTTGCATGATCGTCTTGCTGAGAAGTACAAAGGCATTTTTATACCTCCCCTTCCAGAGAAGAATGCTGTTGAAAAATTCCGGTTTAGCAAAGAGTTCATTGAATTACGGCGTCAAGCCCTGGATCTATTTGTCAATAGAATAGCTTCACATCCTGAACTCAAGCAAAGTGGAGATTTGAAGATATTTTTGCAGGCAGATGAAGAGAAAATGGATAGAGAAAGGTCTTATGAAACTGGTATATTCAAGAAGCCTTCTGATTTCTTACAGATGTTTAAGGATGTACAATCAAAAGTCAGTGATGTTGTTCTGGGAAAAGAAAAGCCTGTGGAGGAATCTAGTCCTGAATATGAAAAGCTTAAAAATTACATATTTGAGCTAGAAAACCATTTAGCAGAGGCACAGAAACAAGCATTCCGTCTTGTGAAAAGACACCGAGAACTTGGGCAATCTTTGGC GGACTTTGGTAAGGCTATTAAGCTTTTAGGTGCTTGCGAAGGGGACTCCTTGGAAAAAGTTTTTTCAGAAGTTGGATCAAAGTCAGAGATGTTATCAGTAAAGCTGCAAAGAGAGGCAGACAACCTTCTCTTTAACTTTGAAGAGCCTTTGAAAGATTATGTACGTGCTGTGCAGTCAATAAAAGCAACTATGGTGGATCGAGCCAATGCTTTCAGGCAGCATCATGATTTATTTCAGCAGAAGGAATATAAAGGGGTTAATCTCGAAAAATTGAAGTTCGTGAACCCTGATAAATTTTCTGAACTAGAA GCTGAGGTCCGAGAGTTGACAGCAGACAGTGAG GAGGCTA CAAAGAGGTTTGAGCACATAGTTGCAGTAAT GAATGAAGAGCTTGCACGTTTCCAAGAGCAGAAAACAGCTGATATT GGATTC GCATTCCAT GAATTT GCCAAAGGCCAAGCA AAGTTAGCTAAAGATATTGCTGATGCATGGCGAGGCGTCCTCCCAAAGCTCGAAGCCTGTTCCACTTCATAAATGCTCCGTGTTAGCTTATGTTGTTTGGT TTAGTGGTTGACAATCGGCGAGTTTTAGGCTGTTTTTTCCCCAGGCCA CCTTGACACCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATACAATTGACATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATATCTCAAGAATGATGCAGTAAAGGGAAAATAAACTTTAAT ]
[+] EMBL AK102304 [ CGTCCCCTCCTCGTCGACTCCCGTCTCGTCTCCTCGCGAGTTCACCTGCCGTCTGCGCCGATCTCCGATTCTCTATCCGGCGAGCAGGGGGACGCCGCCGTCCTGCTGTTTCCGCCGCATCCTGGTTTGGGAGGTTCAACTGAGCCCCCATGTCGCAGGAGAGGAGCCAGTCGCAGAGCCCCCGGTCGCCGGCGTCGGCGGCTGGGGTGCCGTTCCTGTCGATCTCCGTCACAGATCCTGTGAAGATGGGTACCGGAGTCCAGGCCTACATCTCCTATCGCGTCATCACCAAGACCAACCTGCCTGACTTTGAGGGGCAAGAGAAAATTGTTATCCGGCGCTATAGTGACTTTGAGTGGTTGCATGATCGTCTTGCTGAGAAGTACAAAGGCATTTTTATACCTCCCCTTCCAGAGAAGAATGCTGTTGAAAAATTCCGGTTTAGCAAAGAGTTCATTGAATTACGGCGTCAAGCCCTGGATCTATTTGTCAATAGAATAGCTTCACATCCTGAACTCAAGCAAAGTGGAGATTTGAAGATATTTTTGCAGGCAGATGAAGAGAAAATGGATAGAGAAAGGTCTTATGAAACTGGTATATTCAAGAAGCCTTCTGATTTCTTACAGATGTTTAAGGATGTACAATCAAAAGTCAGTGATGTTGTTCTGGGAAAAGAAAAGCCTGTGGAGGAATCTAGTCCTGAATATGAAAAGCTTAAAAATTACATATTTGAGCTAGAAAACCATTTAGCAGAGGCACAGAAACAAGCATTCCGTCTTGTGAAAAGACACCGAGAACTTGGGCAATCTTTGGC GGACTTTGGTAAGGCTATTAAGCTTTTAGGTGCTTGCGAAGGGGACTCCTTGGAAAAAGTTTTTTCAGAAGTTGGATCAAAGTCAGAGATGTTATCAGTAAAGCTGCAAAGAGAGGCAGACAACCTTCTCTTTAACTTTGAAGAGCCTTTGAAAGATTATGTACGTGCTGTGCAGTCAATAAAAGCAACTATGGTGGATCGAGCCAATGCTTTCAGGCAGCATCATGATTTATTTCAGCAGAAGGAATATAAAGGGGTTAATCTCGAAAAATTGAAGTTCGTGAACCCTGATAAATTTTCTGAACTAGAA GCTGAGGTCCGAGAGTTGACAGCAGACAGTGAG GAGGCTA CAAAGAGGTTTGAGCACATAGTTGCAGTAAT GAATGAAGAGCTTGCACGTTTCCAAGAGCAGAAAACAGCTGATATT GGATTC GCATTCCAT GAATTT GCCAAAGGCCAAGCA AAGTTAGCTAAAGATATTGCTGATGCATGGCGAGGCGTCCTCCCAAAGCTCGAAGCCTGTTCCACTTCATAAATGCTCCGTGTTAGCTTATGTTGTTTGGT TTAGTGGTTGACAATCGGCGAGTTTTAGGCTGTTTTTTCCCCAGGCCA CCTTGACACCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATACAATTGACATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATATCTCAAGAATGATGCAGTAAAGGGAAAATAAAC ]
[+] EMBL CB642184 [ TCGTCGACTCCCGTCTCGTCTCCTCGCGAGTTCACCTGCCGTCTGCGCCGATCTCCGATTCTCTATCCGGCGAGCAGGGGGACGCCGCCGTCCTGCTGTTTCCGCCGCATCCTGGTTTGGGAGGTTCAACTGAGCCCCCATGTCGCAGGAGAGGAGCCAGTCGCAGAGCCCCCGGTCGCCGGCGTCGGCGGCTGGGGTGCCGTTCCTGTCGATCTCCGTCACAGATCCTGTGAAGATGGGTACCGGAGTCCAGGCCTACATCTCCTATCGCGTCATCACCAAGACCAACCTGCCTGACTTTGAGGGGCAAGAGAAAATTGTTATCCGGCGCTATAGTGACTTTGAGTGGTTGCATGATCGTCTTGCTGAGAAGTACAAAGGCATTTTTATACCTCCCCTTCCAGAGAAGAATGCTGTTGAAAAATTCCGGTTTAGCAAAGAGTTCATTGAATTACGGCGTCAAGCCCTGGATCTATTTGTCAATAGAATAGCTTCACATCCTGAACTCAAGCAAAGTGGAGATTTGAAGATATTTTTGCAGGCAGATGAAGAGAAAATGGATAGAGAAAGGTCTTATGAAACTGGTATATTCAAGAAGCCTTCTGATTTCTTACAGATGTTTAAGGATGTACAATCAAAAGTCAGTGATGTTGTTCTGGGAAAAGAAAAGCCTGTGGAGGAATCTAGTCCTGAATATGAAAAGCTTAAAAATTACATATTTGAGCTAGAAAACCATTTAGCAGAGGCACAGAAACAAGCATTCCGTCTTGTGAAAAGACACCGAGAACTTGGGCAATCTTTGGC GGACTTTGGTAA GCTATTAAGCTTTTAGCTGCTTGCGAAAGGGACTCCTTGG ]
[+] EMBL CB677747 [ TCCCATTCTCTATCCGGCGAGCAGGGGGACGCCGCCGTCCTGCTGTTTCCGCCGCATCCTGGTTTGGGAGGTTCAACTGAGCCCCCATGTCGCAGGAGAGGAGCCAGTCGCAGAGCCCCCGGTCGCCGGCGTCGGCGGCTGGGGTGCCGTTCCTGTCGATCTCCGTCACAGATCCTGTGAAGATGGGTACCGGAGTCCAGGCCTACATCTCCTATCGCGTCATCACCAAGACCAACCTGCCTGACTTTGAGGGGCAAGAGAAAATTGTTATCCGGCGCTATAGTGACTTTGAGTGGTTGCATGATCGTCTTGCTGAGAAGTACAAAGGCATTTTTATACCTCCCCTTCCAGAGAAGAATGCTGTTGAAAAATTCCGGTTTAGCAAAGAGTTCATTGAATTACGGCGTCAAGCCCTGGATCTATTTGTCAATAGAATAGCTTCACATCCTGAACTCAAGCAAAGTGGAGATTTGAAGATATTTTTGCAGGCAGATGAAGAGAAAATGGATAGAGAAAGGTCTTATGAAACTGGTATATTCAAGAAGCCTTCTGATTTCTTACAGATGTTTAAGGATGTACAATCAAAAGTCAGTGATGTTGTTCTGGGAAAAGAAAAGCCTGTGGAGGAATCTAGTCCTGAATATGAAAAGCTTAAAAATTACATATTTGAGCTAGAAAACCATTTAGCAGAGGCACAGAAACAAGCATTCCGTCTTGTGAAAAGACACCGAGAACTTGGGCCATCTTTGGC GGACTTTGGTAAGGCTATTAAGCT ]
[+] EMBL OSR16221A [ AACTGAGCCCCCATGTCGCAGGAGAGGAGCCAGTCGCAGAGCNCCCGGTCGCCGGCGTCGG GGCTGGGGTGCCGTTCCTGTCGNTCTCCGTCACAGATCCTGTNAAGATGGGTACCGGAGTCCAGGCCTACATCTCCTATCGCGTCATCACCAAGACCAACCTGCCTGACTTTNAGGGGCAAGAGAAAATTGTTATCCGGCGCTATAGTNACTTTNAGTGGTTGCATGATCGTCTTGCTNAGAAGTACAAAGGCATTTTTATACCTCCCNTTNCAGAGAAGAATTCTGTTGNAAAATTCCGTTTTAGCAAAGAGTTAATTGAATTACGGCGTNAAGCCnt ]
[+] EMBL CA759772 [ AGCCTTCTGATTTCTTACAGATGTTTAAGGATGTACAATCAAAAGTCAGTGATGTTGTTCTGGGAAAAGAAAAGCCTGTGGAGGAATCTAGTCCTGAATATGAAAAGCTTAAAAATTACATATTTGAGCTAGAAAACCATTTAGCAGAGGCACAGAAACAAGCATTCCGTCTTGTGAAAAGACACCGAGAACTTGGGCAATCTTTGGC GGACTTTGGTAAGGCTATTAAGCTTTTA ]
[-] EMBL CB642185 [ GAGAACTTGGGCAATCTTTGGCGGGACTTTGGTAAGGCTATTAAGCTTTTAGCTGCTTGCGAAGGGGACTCCTTGGAAAAAGTTTTTTCAGAAGTTGGATCAAAGTCAGAGATGTTATCAGTAAAGCTGCAAAGAGAGGCAGACAACCTTCTCTTTAACTTTGAAGAGCCTTTGAAAGATTATGTACGTGCTGTGCAGTCAATAAAAGCAACTATGGTGGATCGAGCCAATGCTTTCAGGCAGCATCATGATTTATTTCAGCAGAAGGAATATAAAGGGGTTAATCTCGAAAAATTGAAGTTCGTGAACCCTGATAAATTTTCTGAACTAGAA GCTGAGGTCCGAGAGTTGACAGCAGACAGTGAG GAGGCTA CAAAGAGGTTTGAGCACATAGTTGCAGTAAT GAATGAAGAGCTTGCACGTTTCCAAGAGCAGAAAACAGCTGATATT GGATTC GCATTCCAT GAATTT GCCAAAGGCCAAGCA AAGTTAGCTAAAGATATTGCTGATGCATGGCGAGGCGTCCTCCCAAAGCTCGAAGCCTGTTCCACTTCATAAATGCTCCGTGTTAGCTTATGTTGTTTGGT TTAGTGGTTGACAATCGGCGAGTTTTAGGCTGTTTTTTCCCCAGGCCA CCTTGACACCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATACAATTGACATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATATCTCAAGAATGATGCAGTAAAGGGAAAATAAACTTTAATTTGGTACTGTAAAAAAAAga ]
[-] EMBL CB677748 [ CTTGGAAAAAGTTTTTTCAGAAGTTGGATCAAAGTCAGAGATGTTATCAGTAAAGCTGCAAAGAGAGGCAGACAACCTTCTCTTTAACTTTGAAGAGCCTTTGAAAGATTATGTACGTGCTGTGCAGTCAATAAAAGCAACTATGGTGGATCGAGCCAATGCTTTCAGGCAGCATCATGATTTATTTCAGCAGAAGGAATATAAAGGGGTTAATCTCGAAAAATTGAAGTTCGTGAACCCTGATAAATTTTCTGAACTAGAA GCTGAGGTCCGAGAGTTGACAGCAGACAGTGAG GAGGCTA CAAAGAGGTTTGAGCACATAGTTGCAGTAAT GAATGAAGAGCTTGCACGTTTCCAAGAGCAGAAAACAGCTGATATT GGATTC GCATTCCAT GAATTT GCCAAAGGCCAAGCA AAGTTAGCTAAAGATATTGCTGATGCATGGCGAGGCGTCCTCCCAAAGCTCGAAGCCTGTTCCACTTCATAAATGCTCCGTGTTAGCTTATGTTGTTTGGT TTAGTGGTTGACAATCGGCGAGTTTTAGGCTGTTTTTTCCCCAGGCCA CCTTGACACCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATAGAATTGACATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATAGGTCAAGAATGATGCAGTAAAGGGAAAATAAA ]
[+] EMBL BQ906569 [ TTCTGAACTAGAACCCTGAGGTCCGAGAGTTGACAGCAGACAGTGAGTGAGGCTACCAAAGAGGTTTGAGCACATAGTTGCAGTAATNGAATGAAGAGCTTGCACGTTTCCAAGAGCAGAAAACAGCTGATATTGGGATTCGGCATTCCATGGAATTTGGCCAAAGGCCAAGCAGAAGTTAGCTAAAGATATTGCTGATGCATGGCGAGGCGTCCTCCCAAAGCTCGAAGCCTGTTCCACTTCATAAATGCTCCGTGTTAGCTTATGTTGTTTGGTNTTAGTGGTTGACAATCGGCGAGTTTTA GCTGTTTTTTCCCCAGGCCACCCTTGACACCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATACAATTGGCATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATATCTCAAGAATGATCCAGTAAAGGGAAAATAAACTTCATCNTGGTACTGTAAAAAAAAAA ]
[+] EMBL CF328817 [ CCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATACAATTGACATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATATCTCAAGAATGATGCAGTAAAGGGAAAATAAACTTTAATTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||