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Oryza sativa
cluster # 12088 cluster # 12088       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12088#0 length = 1756 sequences # 5  
consensus_12088#1 length = 1038 sequences # 4  
consensus_12088#2 length = 396 sequences # 1  

consensusID : consensus_12088#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1756
fasta sequence
                              [ATCCGATTCATCTGTCTCATCAGATCAGCGTGAAGCAGCGGCAAGAACACAAAAATGGCGGACGAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGTGGCGAGGAGGAGCATGTGGAATGGGCAAAGATCCACACGCCGACGGACGAGGTGGTGGTGCCGTACGACACCCTGGCGGCGCCGCCGGAGGACTTGGAGGAGACCAAGAAGCTGCTCAACAAGCTCGCCGTGCTCAAGCTCAACGGCGGCCTCGGCACCACCATGGGATGCACCGGACCAAAATCGGTCATCGAAGTGCGCAACGGATTCACATTCCTCGACTTGATTGTGATCCAGATCGAGTCCCTCAACAAGAAGTATGGCAGCAATGTCCCACTGCTTCTGATGAACTCATTCAACACCCATGAAGACACCTTGAAGATTGTTGAGAAATACACCAATTCGAACATTGAAGTCCATACTTTCAATCAGAGCCAGTATCCTCGTGTGGTAGCCGATGAGTTCTTGCCATGGCCTTCCAAGGGGAAGACCTGCAAGGATGGCTGGTACCCTCCTGGCCATGGTGATATCTTCCCATCCCTGATGAACAGTGGCAAGCTTGATTTGTTACTTTCACAGGGAAAGGAGTATGTGTTCATTGCAAACTCAGATAACTTGGGTGCTATAGTGGACATGAAGATACTGAACCATTTGATCCACAAACAGAATGAATATTGCATGGAGGTTACCCCGAAAACTCTGGCTGATGTTAAAGGTGGCACACTGATCTCATATGAAGACAAGGTTCAGCTCCTGGAGATTGCACAAGTTCCTGATGCACATGTGAATGAATTCAAATCCATCGAGAAATTCAAGATCTTCAACACGAACAATCTATGGGTGAACTTGAAGGCTATCAAGCGCCTTGTTGAGGCTGATGCACTAAAGATGGAGATCATTCCAAACCCTAAGGAAGTGGATGGAGTTAAAGTTCTTCAGTTGGAAACAGCAGCTGGTGCAGCAATCA-GGTTCTTTGATCACGCAATT-GGTATCAATGTTCCAAGGTCCCGGTTCCTACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAGTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGAACAAACCCATCGAATCCCTCAATTGAACT-GGGTCCAGAGTTCAAGAAGGTCGGGTGTTTCCTT-GGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTGACACCTTGAAGGTTTCCGGTGATGTTTGGTTTGGCTCTAGCATCACATTGAAGGGCAAGGTGACCATCACAGCCCAACCTGGTGTCAAACTGGAAATCCCAGATGGAGCAGTGATCGAGAACAAGGATATCAATGGCCCCGAGGACCTTTGAGCGAAAGGATGCAGAGTTCACAAAGAGAGATCATATCACCATTCCATATAATCAATCAAGCTCCACGACATTGTGGAGAATATTTTTGATCCAATATTGCTTCGGCATAAGGAATAACAAAATTAGTACATGTCTTTTACCTACTTGACTTTGCTTCTTGTTCTATTTTCTCCTTGTGAGTGGGCAAACAAGTCATGTCCCGGCAAAATATCATATGAACATATTTGGTTACATATCTGTTCAACAATCAGCAAGAAAACAAAATGTTATAATTCCATTAACGTTTGTCACTAAAAAA]

[+] EMBL AK071248             [ATCCGATTCATCTGTCTCATCAGATCAGCGTGAAGCAGCGGCAAGAACACAAAAATGGCGGACGAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGTGGCGAGGAGGAGCATGTGGAATGGGCAAAGATCCACACGCCGACGGACGAGGTGGTGGTGCCGTACGACACCCTGGCGGCGCCGCCGGAGGACTTGGAGGAGACCAAGAAGCTGCTCAACAAGCTCGCCGTGCTCAAGCTCAACGGCGGCCTCGGCACCACCATGGGATGCACCGGACCAAAATCGGTCATCGAAGTGCGCAACGGATTCACATTCCTCGACTTGATTGTGATCCAGATCGAGTCCCTCAACAAGAAGTATGGCAGCAATGTCCCACTGCTTCTGATGAACTCATTCAACACCCATGAAGACACCTTGAAGATTGTTGAGAAATACACCAATTCGAACATTGAAGTCCATACTTTCAATCAGAGCCAGTATCCTCGTGTGGTAGCCGATGAGTTCTTGCCATGGCCTTCCAAGGGGAAGACCTGCAAGGATGGCTGGTACCCTCCTGGCCATGGTGATATCTTCCCATCCCTGATGAACAGTGGCAAGCTTGATTTGTTACTTTCACAGGGAAAGGAGTATGTGTTCATTGCAAACTCAGATAACTTGGGTGCTATAGTGGACATGAAGATACTGAACCATTTGATCCACAAACAGAATGAATATTGCATGGAGGTTACCCCGAAAACTCTGGCTGATGTTAAAGGTGGCACACTGATCTCATATGAAGACAAGGTTCAGCTCCTGGAGATTGCACAAGTTCCTGATGCACATGTGAATGAATTCAAATCCATCGAGAAATTCAAGATCTTCAACACGAACAATCTATGGGTGAACTTGAAGGCTATCAAGCGCCTTGTTGAGGCTGATGCACTAAAGATGGAGATCATTCCAAACCCTAAGGAAGTGGATGGAGTTAAAGTTCTTCAGTTGGAAACAGCAGCTGGTGCAGCAATCA GGTTCTTTGATCACGCAATT GGTATCAATGTTCCAAGGTCCCGGTTCCTACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAGTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGAACAAACCCATCGAATCCCTCAATTGAACT GGGTCCAGAGTTCAAGAAGGTCGGGTGTTTCCTT GGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTGACACCTTGAAGGTTTCCGGTGATGTTTGGTTTGGCTCTAGCATCACATTGAAGGGCAAGGTGACCATCACAGCCCAACCTGGTGTCAAACTGGAAATCCCAGATGGAGCAGTGATCGAGAACAAGGATATCAATGGCCCCGAGGACCTTTGAGCGAAAGGATGCAGAGTTCACAAAGAGAGATCATATCACCATTCCATATAATCAATCAAGCTCCACGACATTGTGGAGAATATTTTTGATCCAATATTGCTTCGGCATAAGGAATAACAAAATTAGTACATGTCTTTTACCTACTTGACTTTGCTTCTTGTTCTATTTTCTCCTTGTGAGTGGGCAAACAAGTCATGTCCCGGCAAAATATCATATGAACATATTTGGTTACATATCTGTTCAACAATCAGCAAGAAAACAAAATGTTATAATTCCATTAACGTTTGTCACT      ]
[+] EMBL AF249880             [             GTCTCATCAGATCAGCGTGAAGCAGCGGCAAGAACACAAAAATGGCGGACGAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGTGGCGAGGAGGAGCATGTGGAATGGGCAAAGATCCACACGCCGACGGACGAGGTGGTGGTGCCGTACGACACCCTGGAGGCGCCGCCGGAGGACTTGGAGGAGACCAAGAAGCTGCTCAACAAGCTCGCCGTGCTCAAGCTCAACGGCGGCCTCGGCACCACCATGGGATGCACCGGACCAAAATCGGTCATCGAAGTGCGCAACGGATTCACATTCCTCGACTTGATTGTGATCCAGATCGAGTCCCTCAACAAGAAGTATGGCAGCAATGTCCCACTGCTTCTGATGAACTCATTCAACACCCATGAAGACACCTTGAAGATTGTTGAGAAATACACCAATTCGAACATTGAAGTCCATACTTTCAATCAGAGCCAGTATCCTCGTGTGGTAGCCGATGAGTTCTTGCCATGGCCTTCCAAGGGGAAGACCTGCAAGGATGGCTGGTACCCTCCTGGCCATGGTGATATCTTCCCATCCCTGATGAACAGTGGCAAGCTTGATTTGTTACTTTCACAGGGAAAGGAGTATGTGTTCATTGCAAACTCAGATAACTTGGGTGCTATAGTGGACATGAAGATACTGAACCATTTGATCCACAAACAGAATGAATATTGCATGGAGGTTACCCCGAAAACTCTGGCTGATGTTAAAGGTGGCACACTGATCTCATATGAAGACAAGGTTCAGCTCCTGGAGATTGCACAAGTTCCTGATGCACATGTGAATGAATTCAAATCCATCGAGAAATTCAAGATCTTCAACACGAACAATCTATGGGTGAACTTGAAGGCTATCAAGCGCCTTGTTGAGGCTGATGCACTAAAGATGGAGATCATTCCAAACCCTAAGGAAGTGGATGGAGTTAAAGTTCTTCAGTTGGAAACAGCAGCTGGTGCAGCAATCA GGTTCTTTGATCACGCAATT GGTATCAATGTTCCAAGGTCCCGGTTCCTACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAGTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGAACAAACCCATCGAATCCCTCAATTGAACT GGGTCCAGAGTTCAAGAAGGTCGGGTGTTTCCTT GGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTGACACCTTGAAGGTTTCCGGTGATGTTTGGTTTGGCTCTAGCATCACATTGAAGGGCAAGGTGACCATCACAGCCCAACCTGGTGTCAAACTGGAAATCCCAGATGGAGCAGTGATCGAGAACAAGGATATCAATGGCCCCGAGGACCTTTGAGCGAAAGGATGCAGAGTTCACAAAGAGAGATCATATCACCATTCCATATAATCAATCAAGCTCCACGACATTGTGGAGA  ATTTTTGATCCAATATTGCTTCGGCATAAGGAATAACAAAATTAGTACATGTCTTTTACCTACTTGACTTTGCTTCTTGTTCTATTTTCTCCTTGTGAGTGGGCAAACAAGTCATGTCCCGGCAAAATATCATATGAACATATTTGGTTACATATCTGTTCAACAATCAGCAAGAAAACAAAATGTTATAATTCaaaaaaaaa              ]
[+] EMBL C93600               [                 CATCAGATCAGCGTGAAGCAGCGGCAAGAACACAAAANTGGCGGACGAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGTGGCGAGGAGGAGCATGTGGAATGGGCAAAGATCCACACGCCGACGGACGAGGTGGTGGTGCCGTACGACACCCTGGCGGCGCCGCGGAAGGACTTGGAGGAGACCAAGAAGCTGCTCAACAAGCTCGCCGTGCTCAAGCTCAACGGCGGCCTCGGCACCACCATGGGATGCACCGGNCCAAAATCGGTCATCGAAGTTCGCAACGGATTCACATTCCTCGGCTTGATTGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL C72819               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCAGCAATCAGGGTTCTTTGATCACGCAATTGGGTATCAATGTTCCAAGGTCCCGGTTCCTACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAGTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGNCAGAACAAACCCATCGAATCCCTCAATTGAACTGGGGTCCAGAGTTCAAGAAGGTCGGGTGTTTCCTTGGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTGACACCTTGAAGGTTTCCGGTGATGTTTGGTTTGGCTCNAGCATCACANTGAAGGGgc                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU085901             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAAGGCAACATCAGATTTGCAGCTAGTACAGTCTGATCTATATACCTTGGTTGATGNCTTTGTTAC CGCAACCCGGCCAGAACAAACCCATCGAATCCCTCAATTGAACT GGGTCCAGAGTTCAAGAAGGTCGGGTGTTTCCTT GGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTGACACCTTGAAGGTTTCCGGTGATGTTTGGTTTGGCTCTAGCATCACATTGAAGGGCAAGGTGACCATCACAGCCCAACCTGGTGTCAAACTGGAAATCCCAGATGGAGCAGTGATCGAGAACAAGGATATCAATGGCCCCGAGGACCTTTGAGCGAAAGGATGCAGAGTTCACAAAGAGAGATCATATCACCATTCCATATAATCAATCAAGCTCCACGACATTGTGGAGAATATTTTTGATCCAATATTGCTTCGGCATAAGGAATAACAAAATTAGTACATGTCTTTTACCTACTTGACTTTGCTTCTTGTTCTATTTTCTCCTTGTGAGTGGGCAAACAAGTCATGTCCCGGCAAAATATCATATGAACATATTTGGTTACATATCTGTTCAACAATCAGCAAGAAAACAAAATGTTATAATTCCATTAACGTTTGTCACTAAAAAA]


>consensus_12088#0 ATCCGATTCATCTGTCTCATCAGATCAGCGTGAAGCAGCGGCAAGAACACAAAAATGGCG GACGAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGTGACAAC GAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGTGGCGAGGAGGAGCATGTG GAATGGGCAAAGATCCACACGCCGACGGACGAGGTGGTGGTGCCGTACGACACCCTGGCG GCGCCGCCGGAGGACTTGGAGGAGACCAAGAAGCTGCTCAACAAGCTCGCCGTGCTCAAG CTCAACGGCGGCCTCGGCACCACCATGGGATGCACCGGACCAAAATCGGTCATCGAAGTG CGCAACGGATTCACATTCCTCGACTTGATTGTGATCCAGATCGAGTCCCTCAACAAGAAG TATGGCAGCAATGTCCCACTGCTTCTGATGAACTCATTCAACACCCATGAAGACACCTTG AAGATTGTTGAGAAATACACCAATTCGAACATTGAAGTCCATACTTTCAATCAGAGCCAG TATCCTCGTGTGGTAGCCGATGAGTTCTTGCCATGGCCTTCCAAGGGGAAGACCTGCAAG GATGGCTGGTACCCTCCTGGCCATGGTGATATCTTCCCATCCCTGATGAACAGTGGCAAG CTTGATTTGTTACTTTCACAGGGAAAGGAGTATGTGTTCATTGCAAACTCAGATAACTTG GGTGCTATAGTGGACATGAAGATACTGAACCATTTGATCCACAAACAGAATGAATATTGC ATGGAGGTTACCCCGAAAACTCTGGCTGATGTTAAAGGTGGCACACTGATCTCATATGAA GACAAGGTTCAGCTCCTGGAGATTGCACAAGTTCCTGATGCACATGTGAATGAATTCAAA TCCATCGAGAAATTCAAGATCTTCAACACGAACAATCTATGGGTGAACTTGAAGGCTATC AAGCGCCTTGTTGAGGCTGATGCACTAAAGATGGAGATCATTCCAAACCCTAAGGAAGTG GATGGAGTTAAAGTTCTTCAGTTGGAAACAGCAGCTGGTGCAGCAATCAGGTTCTTTGAT CACGCAATTGGTATCAATGTTCCAAGGTCCCGGTTCCTACCAGTGAAGGCAACATCAGAT TTGCAGCTAGTACAGTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCG GCCAGAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAGGTCGGG TGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTGACACCTTGAAGGTT TCCGGTGATGTTTGGTTTGGCTCTAGCATCACATTGAAGGGCAAGGTGACCATCACAGCC CAACCTGGTGTCAAACTGGAAATCCCAGATGGAGCAGTGATCGAGAACAAGGATATCAAT GGCCCCGAGGACCTTTGAGCGAAAGGATGCAGAGTTCACAAAGAGAGATCATATCACCAT TCCATATAATCAATCAAGCTCCACGACATTGTGGAGAATATTTTTGATCCAATATTGCTT CGGCATAAGGAATAACAAAATTAGTACATGTCTTTTACCTACTTGACTTTGCTTCTTGTT CTATTTTCTCCTTGTGAGTGGGCAAACAAGTCATGTCCCGGCAAAATATCATATGAACAT ATTTGGTTACATATCTGTTCAACAATCAGCAAGAAAACAAAATGTTATAATTCCATTAAC GTTTGTCACTAAAAAA



consensusID : consensus_12088#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1038
fasta sequence
                              [GTATTCTCTCATTTCAGGATATCAATGGCCCCGAGGACCTTTGAGCGAAAGGATGCAGAGTTCACAAAGAGAGATCATATCACCATTCCATATAATCAATCAAGCTCCACGACATTGTGGAGAATATTTTTGATCCAATATTGCTTCGGCATAAGGAATAACAAAATTAGTACATGTCTTTTACCTACTTGACTTTGCTTCTTGTTCTATTTTCTCCTTGTGAGTGGGCAAACAAGTCATGTCCCGGCAAAATATCATATGAACATATTTGGTTACATATCTCATGAAAGTTCCCCATCCATTGCAAACAAAAATGGTCATTTCTCTGCAGGAGGGACAACTTCCAAAAGCTCTATATCGAGTTCAAAAGGAGCATCAGGCGGTATCTCATTCATCCCCTTTTTCCCATATCCGAGCTCTGGAGGGACAATTACTCTCCTCTTTCCCCCCACTTTCATCCCTTCAGTTATTGTGTACATTGCGGCAGGAGGTTTCGGTGACGCCTGTGCTGAGTATAACCCATTGGCACTGTCTACAAATTCCCGCTTTCGCTCTTTCCCGGGCAGCGATCCGACACTGAACTCATAAGGCTGCGCAATACTCCGGTTCCCTGCCAGTAGTTTGGCTTCGCGGCTTGACACAGCGGTGATGCCACGGTATATGCAATCAAAATGGACCTGCACAGTTGAGCCCTTTTCAGCAGTTGGACCCTTCCCTTCAACAAGATCATAGTACTTCAGGCCATCAGGTGAAGTGACGTAGTCCTCCAGCGACACGACCATGCGGCCCCTCCGCGCGGCTAGCGAAGGCGGCGAGACGGCGATCAAGAATCCGGCGGCGGAGAGCAGCTGCGCGGCTGCCCGCCGCCGGGAGACGGCCGCGCGGAGGCAGCAGCATGCGGCGGCGCAGGCCCCTCTCGAAGGAGGTGGAGGTGCGGAGGAGGGAAGCGAGTGGCGGTAGAAGGTTCTAGAAGGGAGGGAAGAGGAAGCCATGGAGGAATCCAGCGGAGGAAGGGGACGGAGGAGAAGAGCCGAAATG]

[-] EMBL AK112015             [GTATTCTCTCATTTCAGGATATCAATGGCCCCGAGGACCTTTGAGCGAAAGGATGCAGAGTTCACAAAGAGAGATCATATCACCATTCCATATAATCAATCAAGCTCCACGACATTGTGGAGAATATTTTTGATCCAATATTGCTTCGGCATAAGGAATAACAAAATTAGTACATGTCTTTTACCTACTTGACTTTGCTTCTTGTTCTATTTTCTCCTTGTGAGTGGGCAAACAAGTCATGTCCCGGCAAAATATCATATGAACATATTTGGTTACATATCTCATGAAAGTTCCCCATCCATTGCAAACAAAAATGGTCATTTCTCTGCAGGAGGGACAACTTCCAAAAGCTCTATATCGAGTTCAAAAGGAGCATCAGGCGGTATCTCATTCATCCCCTTTTTCCCATATCCGAGCTCTGGAGGGACAATTACTCTCCTCTTTCCCCCCACTTTCATCCCTTCAGTTATTGTGTACATTGCGGCAGGAGGTTTCGGTGACGCCTGTGCTGAGTATAACCCATTGGCACTGTCTACAAATTCCCGCTTTCGCTCTTTCCCGGGCAGCGATCCGACACTGAACTCATAAGGCTGCGCAATACTCCGGTTCCCTGCCAGTAGTTTGGCTTCGCGGCTTGACACAGCGGTGATGCCACGGTATATGCAATCAAAATGGACCTGCACAGTTGAGCCCTTTTCAGCAGTTGGACCCTTCCCTTCAACAAGATCATAGTACTTCAGGCCATCAGGTGAAGTGACGTAGTCCTCCAGCGACACGACCATGCGGCCCCTCCGCGCGGCTAGCGAAGGCGGCGAGACGGCGATCAAGAATCCGGCGGCGGAGAGCAGCTGCGCGGCTGCCCGCCGCCGGGAGACGGCCGCGCGGAGGCAGCAGCATGCGGCGGCGCAGGCCCCTCTCGAAGGAGGTGGAGGTGCGGAGGAGGGAAGCGAGTGGCGGTAGAAGGTTCTAGAAGGGAGGGAAGAGGAAGCCATGGAGGAATCCAGCGGAGGAAG                         ]
[-] EMBL AK111582             [                                                                        GATCATATCACCATTCCATATAATCAATCAAGCTCCACGACATTGTGGAGAATATTTTTGATCCAATATTGCTTCGGCATAAGGAATAACAAAATTAGTACATGTCTTTTACCTACTTGACTTTGCTTCTTGTTCTATTTTCTCCTTGTGAGTGGGCAAACAAGTCATGTCCCGGCAAAATATCATATGAACATATTTGGTTACATATCTCATGAAAGTTCCCCATCCATTGCAAACAAAAATGGTCATTTCTCTGCAGGAGGGACAACTTCCAAAAGCTCTATATCGAGTTCAAAAGGAGCATCAGGCGGTATCTCATTCATCCCCTTTTTCCCATATCCGAGCTCTGGAGGGACAATTACTCTCCTCTTTCCCCCCACTTTCATCCCTTCAGTTATTGTGTACATTGCGGCAGGAGGTTTCGGTGACGCCTGTGCTGAGTATAACCCATTGGCACTGTCTACAAATTCCCGCTTTCGCTCTTTCCCGGGCAGCGATCCGACACTGAACTCATAAGGCTGCGCAATACTCCGGTTCCCTGCCAGTAGTTTGGCTTCGCGGCTTGACACAGCGGTGATGCCACGGTATATGCAATCAAAATGGACCTGCACAGTTGAGCCCTTTTCAGCAGTTGGACCCTTCCCTTCAACAAGATCATAGTACTTCAGGCCATCAGGTGAAGTGACGTAGTCCTCCAGCGACACGACCATGCGGCCCCTCCGCGCGGCTAGCGAAGGCGGCGAGACGGCGATCAAGAATCCGGCGGCGGAGAGCAGCTGCGCGGCTGCCCGCCGCCGGGAGACGGCCGCGCGGAGGCAGCAGCATGCGGCGGCGCAGGCCCCTCTCGAAGGAGGTGGAGGTGCGGAGGAGGGAAGCGAGTGGCGGTAGAAGGTTCTAGAAGGGAGGGAAGAGGAAGCCATGGAGGAATCCAGCGGAGGAAGGGGACGGAGGAGAAGAGCCGAAATG]
[-] EMBL AK104162             [                                                                        GATCATATCACCATTCCATATAATCAATCAAGCTCCACGACATTGTGGAGAATATTTTTGATCCAATATTGCTTCGGCATAAGGAATAACAAAATTAGTACATGTCTTTTACCTACTTGACTTTGCTTCTTGTTCTATTTTCTCCTTGTGAGTGGGCAAACAAGTCATGTCCCGGCAAAATATCATATGAACATATTTGGTTACATATCTCATGAAAGTTCCCCATCCATTGCAAACAAAAATGGTCATTTCTCTGCAGGAGGGACAACTTCCAAAAGCTCTATATCGAGTTCAAAAGGAGCATCAGGCGGTATCTCATTCATCCCCTTTTTCCCATATCCGAGCTCTGGAGGGACAATTACTCTCCTCTTTCCCCCCACTTTCATCCCTTCAGTTATTGTGTACATTGCGGCAGGAGGTTTCGGTGACGCCTGTGCTGAGTATAACCCATTGGCACTGTCTACAAATTCCCGCTTTCGCTCTTTCCCGGGCAGCGATCCGACACTGAACTCATAAGGCTGCGCAATACTCCGGTTCCCTGCCAGTAGTTTGGCTTCGCGGCTTGACACAGCGGTGATGCCACGGTATATGCAATCAAAATGGACCTGCACAGTTGAGCCCTTTTCAGCAGTTGGACCCTTCCCTTCAACAAGATCATAGTACTTCAGGCCATCAGGTGAAGTGACGTAGTCCTCCAGCGACACGACCATGCGGCCCCTCCGCGCGGCTAGCGAAGGCGGCGAGACGGCGATCAAGAATCCGGCGGCGGAGAGCAGCTGCGCGGCTGCCCGCCGCCGGGAGACGGCCGCGCGGAGGCAGCAGCATGCGGCGGCGCAGGCCCCTCTCGAAGGAGGTGGAGGTGCGGAGGAGGGAAGCGAGTGGCGGTAGAAGGTTCTAGAAGGGAGGGAAGAGGAAGCCATGGAGGAATCCAGCGGAGGAAGGGGACGGAGGAGAAGAGCCGAAAT ]
[-] EMBL CF325728             [                                                                                                                                                                                                                                                                                                                                                                      CGAGTTCAAAAGGAGCATCAGGCGGTATCTCATTCATCCCCTTTTTCCCATATCCGAGCTCTGGAGGGACAATTACTCTCCTCTTTCCCCCCACTTTCATCCCTTCAGTTATTGTGTACATTGCGGCAGGAGGTTTCGGTGACGCCTGTGCTGAGTATAACCCATTGGCACTGTCTACAAATTCCCGCTTTCGCTCTTTCCCGGGCAGCGATCCGACACTGAACTCATAAGGCTGCGCAATACTCCGGTTCCCTGCCAGTAGTTTGGCTTCGCGGCTTGACACAGCGGTGATGCCACGGTATATGCAATCAAAATGGACCTGCACAGTTGAGCCCTTTTCAGCAGTTGGACCCTTCCCTTCAACAAGATCATAGTACTTCAGGCCATCAGGTGAAGTGACGTAGTCCTCCAGCGACACGACCATGCGGCCCCTCCGCGCGGCTAGCGAAGGCGGCGAGACGGCGATCAAGAATCCGGCGGCGGAGAGCAGCTGCGCGGCTGCCCGCCGCCGGGAGACGGCCGCGCGGAGGC                                                                                                                                                     ]


>consensus_12088#1 GTATTCTCTCATTTCAGGATATCAATGGCCCCGAGGACCTTTGAGCGAAAGGATGCAGAG TTCACAAAGAGAGATCATATCACCATTCCATATAATCAATCAAGCTCCACGACATTGTGG AGAATATTTTTGATCCAATATTGCTTCGGCATAAGGAATAACAAAATTAGTACATGTCTT TTACCTACTTGACTTTGCTTCTTGTTCTATTTTCTCCTTGTGAGTGGGCAAACAAGTCAT GTCCCGGCAAAATATCATATGAACATATTTGGTTACATATCTCATGAAAGTTCCCCATCC ATTGCAAACAAAAATGGTCATTTCTCTGCAGGAGGGACAACTTCCAAAAGCTCTATATCG AGTTCAAAAGGAGCATCAGGCGGTATCTCATTCATCCCCTTTTTCCCATATCCGAGCTCT GGAGGGACAATTACTCTCCTCTTTCCCCCCACTTTCATCCCTTCAGTTATTGTGTACATT GCGGCAGGAGGTTTCGGTGACGCCTGTGCTGAGTATAACCCATTGGCACTGTCTACAAAT TCCCGCTTTCGCTCTTTCCCGGGCAGCGATCCGACACTGAACTCATAAGGCTGCGCAATA CTCCGGTTCCCTGCCAGTAGTTTGGCTTCGCGGCTTGACACAGCGGTGATGCCACGGTAT ATGCAATCAAAATGGACCTGCACAGTTGAGCCCTTTTCAGCAGTTGGACCCTTCCCTTCA ACAAGATCATAGTACTTCAGGCCATCAGGTGAAGTGACGTAGTCCTCCAGCGACACGACC ATGCGGCCCCTCCGCGCGGCTAGCGAAGGCGGCGAGACGGCGATCAAGAATCCGGCGGCG GAGAGCAGCTGCGCGGCTGCCCGCCGCCGGGAGACGGCCGCGCGGAGGCAGCAGCATGCG GCGGCGCAGGCCCCTCTCGAAGGAGGTGGAGGTGCGGAGGAGGGAAGCGAGTGGCGGTAG AAGGTTCTAGAAGGGAGGGAAGAGGAAGCCATGGAGGAATCCAGCGGAGGAAGGGGACGG AGGAGAAGAGCCGAAATG



consensusID : consensus_12088#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence
                              [AAGAGCGTACGTGAAGTGACGTAGTCCGTCCAGCGACACGACCATGCGGCCCCTCCGCGCGGCTAGCGAAGGCGGCGAGACGGCGATCAAGAATCCGGCGGCGGAGAGCAGCTGCGCGGCTGCCCGCCGCCGGGAGACGGCCGCGCGGAGGCAGCAGCATGCGGCGGCGCAGGCCCCTCTCGAAGGAGGTGGAGGTGCGGAGGAGGGAAGCGAGTNGCGGTAGAAGGTTCTAGAAGGGAGGGAAGAGGAAGCCATGGAGGAATCCAGCGGAGGAAGGGGACGGAGGAGAAGAGCCGAAATGGCGCGCATATCATATCCATAAAGATGCTTANCTGTCTACCGAGAATAATTCAAGAAATTCAAGATTTTTCCATTTTCCATTTNAAAAAAAAAAAA]

[+] EMBL AU163904             [AAGAGCGTACGTGAAGTGACGTAGTCCGTCCAGCGACACGACCATGCGGCCCCTCCGCGCGGCTAGCGAAGGCGGCGAGACGGCGATCAAGAATCCGGCGGCGGAGAGCAGCTGCGCGGCTGCCCGCCGCCGGGAGACGGCCGCGCGGAGGCAGCAGCATGCGGCGGCGCAGGCCCCTCTCGAAGGAGGTGGAGGTGCGGAGGAGGGAAGCGAGTNGCGGTAGAAGGTTCTAGAAGGGAGGGAAGAGGAAGCCATGGAGGAATCCAGCGGAGGAAGGGGACGGAGGAGAAGAGCCGAAATGGCGCGCATATCATATCCATAAAGATGCTTANCTGTCTACCGAGAATAATTCAAGAAATTCAAGATTTTTCCATTTTCCATTTNAAAAAAAAAAAA]


>consensus_12088#2 AAGAGCGTACGTGAAGTGACGTAGTCCGTCCAGCGACACGACCATGCGGCCCCTCCGCGC GGCTAGCGAAGGCGGCGAGACGGCGATCAAGAATCCGGCGGCGGAGAGCAGCTGCGCGGC TGCCCGCCGCCGGGAGACGGCCGCGCGGAGGCAGCAGCATGCGGCGGCGCAGGCCCCTCT CGAAGGAGGTGGAGGTGCGGAGGAGGGAAGCGAGTNGCGGTAGAAGGTTCTAGAAGGGAG GGAAGAGGAAGCCATGGAGGAATCCAGCGGAGGAAGGGGACGGAGGAGAAGAGCCGAAAT GGCGCGCATATCATATCCATAAAGATGCTTANCTGTCTACCGAGAATAATTCAAGAAATT CAAGATTTTTCCATTTTCCATTTNAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12088#1      ------------------------------------------------------------
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      ATCCGATTCATCTGTCTCATCAGATCAGCGTGAAGCAGCGGCAAGAACACAAAAATGGCG 60
                                                                                   

consensus_12088#1      ------------------------------------------------------------
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      GACGAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGTGACAAC 120
                                                                                   

consensus_12088#1      ------------------------------------------------------------
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      GAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGTGGCGAGGAGGAGCATGTG 180
                                                                                   

consensus_12088#1      ------------------------------------------------------------
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      GAATGGGCAAAGATCCACACGCCGACGGACGAGGTGGTGGTGCCGTACGACACCCTGGCG 240
                                                                                   

consensus_12088#1      ------------------------------------------------------------
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      GCGCCGCCGGAGGACTTGGAGGAGACCAAGAAGCTGCTCAACAAGCTCGCCGTGCTCAAG 300
                                                                                   

consensus_12088#1      ------------------------------------------------------------
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      CTCAACGGCGGCCTCGGCACCACCATGGGATGCACCGGACCAAAATCGGTCATCGAAGTG 360
                                                                                   

consensus_12088#1      -------------------------------------GTATTCTCTCATTTCAGGATATC 23
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      CGCAACGGATTCACATTCCTCGACTTGATTGTGATCCAGATCGAGTCCCTCAACAAGAAG 420
                                                                                   

consensus_12088#1      AATGGCCCCGAGGACCTTTGAG--CGAAAGGATGCAGAGTTCACAAAGAGAGATCATATC 81
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      TATGGCAGCAATGTCCCACTGCTTCTGATGAACTCATTCAACACCCATGAAGACACCTTG 480
                                                                                   

consensus_12088#1      ACCATTCCATATAATCAATCAAGCTCCACGACATTGTGGAGAATATTTTTGATCCAATAT 141
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      AAGATTGTTGAGAAATACACCAATTCGA--ACATTGAAGTCCATACTTTCAATCAGAGCC 538
                                                                                   

consensus_12088#1      TGCTTCGGCATAAGGAA--TAACAAAATTAGTACATGTCTTTTACCTACTTGACTTTGCT 199
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      AGTATCCTCGTGTGGTAGCCGATGAGTTCTTGCCATGGCCTTCCAAGGGGAAGACCTGCA 598
                                                                                   

consensus_12088#1      TCTTGTTCTATTTTCTCCTTGTGAGTGGGCAAACAAGTCATGTCCCGGCAAAATATCATA 259
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      AGGATGGCTGGTACCCTCCTGGCCATGGTGATATCTTCCCATCCCTGATGAACAGTGGCA 658
                                                                                   

consensus_12088#1      TGAACATATTTGGTTACATATCTCATGAAAGTTCCCCATCCATTGCAAACAAAAATGGTC 319
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      AGCTTGATTTGTTACTTTCACAGGGAAAGGAGTATGTGTTCATTGCAAACTCAGATAACT 718
                                                                                   

consensus_12088#1      ATTTCTCTGCAGGAGGGACAAC--TTCCAAAAGCTCTATATCGAGTTCAAAAGGAGCATC 377
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      TGGGTGCTATAGTGGACATGAAGATACTGAACCATTTGATCCACAAACAGAATGAATATT 778
                                                                                   

consensus_12088#1      AGGCGGTATCTCATTCATCCCCTTTTTCCCATATCCGAGCTCTGGAGGGACAATTACTCT 437
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      GCATGGAGGTTACCCCGAAAACTCTGGCTGATGTTAAAGGTGGCACACTGATCTCATATG 838
                                                                                   

consensus_12088#1      CCTCTTTCCCCCCACTTTCATCCCTTCAGTTATTGTGTACATTGCGGCAGGAGGTTTCGG 497
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      AAGACAAGGTTCAGCTCCTGGAGATTGCACAAGTTCCTGATGCACATGTGAATGAATTCA 898
                                                                                   

consensus_12088#1      TGACGCCTGTGCTGAGTATAACCCATTGGCACTGTCTACAAATTCCCGCTTTCGCTCTTT 557
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      -AATCCATCGAGAAATTCAAGATCTTCAACACGAACAATCTATGGGTGAACTTGAAGGCT 957
                                                                                   

consensus_12088#1      CCCGGGCAGCGATCCGACACTGAACTCATAAGGCTGCGCAATACTCCGGTTCCCTGCCAG 617
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      ATCAAGCGCCTTGTTGAGGCTGATGCACTAAAGATGGAGATCATTCCAAACCCTAAGGAA 1017
                                                                                   

consensus_12088#1      TAGTTTGGCTTCGCGGCTTGACACAGCGGTGATGCCACGGTATATGCAATCAAAATGGAC 677
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      GTGGATGGAGTTAAAGTTCTTCAGTTGGAAACAGCAGCTGGTGCAGCAATCAGGTTCTTT 1077
                                                                                   

consensus_12088#1      --CTGCACAGTTGAGCCC----TTTTCAGCAGTTGGACCCTTCCCTTCAACAAGATCATA 731
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      GATCACGCAATTGGTATCAATGTTCCAAGGTCCCGGTTCCTACCAGTGAAGGCAACATCA 1137
                                                                                   

consensus_12088#1      GTACTTCAGGCCATC-AGGTGAAGTGACGTAGTCC-TCCAGCGACACGAC--CATGCGGC 787
consensus_12088#2      ------AAGAGCGT--ACGTGAAGTGACGTAGTCCGTCCAGCGACACGAC--CATGCGGC 50
consensus_12088#0      GATTTGCAGCTAGTACAGTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAAC 1197
                              **    *  *     *   *  **           * *       ** **  *

consensus_12088#1      CCCTCCG---CGCGGCTAGCGAAGGCGGCGAGACGGC--GATCAAGAATCCGGCGGCGGA 842
consensus_12088#2      CCCTCCG---CGCGGCTAGCGAAGGCGGCGAGACGGC--GATCAAGAATCCGGCGGCGGA 105
consensus_12088#0      CCGGCCAGAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAGGTC 1257
                       **  **    *    * * ****  *  * *     *  * ** *** * *      *  

consensus_12088#1      GAGCAGCTGCGCGGCTGCCC-------GCCGCCGG-------GAGACGGCCGCGCGGAGG 888
consensus_12088#2      GAGCAGCTGCGCGGCTGCCC-------GCCGCCGG-------GAGACGGCCGCGCGGAGG 151
consensus_12088#0      GGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTGACACCTTGAAG 1317
                       * *    * *  **  **           * ** *       ***   * * *   ** *

consensus_12088#1      -----CAGCAGCATGCGGC--GGCGCAGGCCCCTC-TCGAAGGAGGTGGAGGTGCGGAGG 940
consensus_12088#2      -----CAGCAGCATGCGGC--GGCGCAGGCCCCTC-TCGAAGGAGGTGGAGGTGCGGAGG 203
consensus_12088#0      GTTTCCGGTGATGTTTGGTTTGGCTCTAGCATCACATTGAAGGGCAAGGTGACCATCACA 1377
                            * *     *  **   *** *  **  * * * *****    ** *      *  

consensus_12088#1      AGGGAAGCGAGTGGCGG-TAGAAGGTTCTAGAAGGGAGGGAAGAGGAAGCCATGGAGG-- 997
consensus_12088#2      AGGGAAGCGAGTNGCGG-TAGAAGGTTCTAGAAGGGAGGGAAGAGGAAGCCATGGAGG-- 260
consensus_12088#0      GCCCAACCTGGTGTCAAACTGGAAATCCCAGATGGAGCAGTGATCGAGAACAAGGATATC 1437
                           ** *  **  *     * *  * * *** **    *     **   ** ***    

consensus_12088#1      AATCCAGCGGAGGA------AGGGGACGGAGGAGAAGAGCCGAAATG------------- 1038
consensus_12088#2      AATCCAGCGGAGGA------AGGGGACGGAGGAGAAGAGCCGAAATGGCGCGCATATCAT 314
consensus_12088#0      AATGGCCCCGAGGACCTTTGAGCGAAAGGATGCAGAGTTCACAAAGAGAGATCATATCAC 1497
                       ***    * *****      ** * * *** *   **  *  ***               

consensus_12088#1      ------------------------------------------------------------
consensus_12088#2      ATCCATAAAGATGCTTANCTGTCTACCGAGAATAATTCAAGAAATTCAAGATTTTTCCAT 374
consensus_12088#0      CATTCCATATAATCAATCAAGCTCCACGACATTGTGGAGAATATTTTTGATCCAATATTG 1557
                                                                                   

consensus_12088#1      ------------------------------------------------------------
consensus_12088#2      TTTCCATTTNAAAAAAAAAAAA-------------------------------------- 396
consensus_12088#0      CTTCGGCATAAGGAATAACAAAATTAGTACATGTCTTTTACCTACTTGACTTTGCTTCTT 1617
                                                                                   

consensus_12088#1      ------------------------------------------------------------
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      GTTCTATTTTCTCCTTGTGAGTGGGCAAACAAGTCATGTCCCGGCAAAATATCATATGAA 1677
                                                                                   

consensus_12088#1      ------------------------------------------------------------
consensus_12088#2      ------------------------------------------------------------
consensus_12088#0      CATATTTGGTTACATATCTGTTCAACAATCAGCAAGAAAACAAAATGTTATAATTCCATT 1737
                                                                                   

consensus_12088#1      -------------------
consensus_12088#2      -------------------
consensus_12088#0      AACGTTTGTCACTAAAAAA 1756
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)