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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1249 fasta sequence
[AACCCAACCTCAAACACAACCAATCCACCTCCGATTCCTTCATCCGCCGCCACCGCCGCCGTCGCCGCCGCCGGGATCCCGCCCGCAACCGCACCGCGGCGGCTCCTTCCCTTCCTCCAG--ACCAACCAGATTGTGGGATCTTCCTAGAGAGCGCTGTTGTCCTGCACGAGTAGAATAGCAGATGGCGAGGATAAAGCCGAAGCAATTGCTAATTCAAAGCAAGACGAAGAAGGCCCCAACACGGATCAGTTACTCCACTATCGTTACTTGGAACCTAATTGTTATCTTGGTTGCGCTATCCCTCTATGCTACCTACAGGCATTGGCATCACAGGCCAATGC-TCGAGACTGAAATGGATCTCCCTCGTGCTGAGCATGTTGGAAGATCTGAGGATTCCACGAAGACTAGTAGACCAAGCTATGCGGTTATTGATACTGCCAAAGGCTCAATTACTATAGAAATTTACAAAGATGCTTCTGCTGATGTTGTGGATAGATTTGTTAGCTTGTGCAAGAGTAACCATTTTAAAGGAATGCCGTTTCGTCATGTCATCAAAAACTTTGTAATTCAAGGGGGTGATTTCGATTTCAATGGTGCTGCCCAGGAATGGATACTGAAAGCCAAAGCCAGTGGAGAAAACGCTCTAAGTCCAAAGCACGAGGCATTCATGATCGGGACTACGAAGAATCCTAATAATAAAGGATTTGATCTTTTTATCACAACTGCTCCAATTCCTGACTTGAATGACAAGCTTGTTGTATTTGGGCAAGTTATCAATGGACA-AGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCATTACCAGCCAAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCA-AGCTTTGAGCTGATAGCTTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCCAATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTTGGAATTCATAGTTAGTTATGAGGAATAAGTTCATCTGAGGTCCCTTAAAAAAAAAA]
[+] EMBL AK066346 [AACCCAACCTCAAACACAACCAATCCACCTCCGATTCCTTCATCCGCCGCCACCGCCGCCGTCGCCGCCGCCGGGATCCCGCCCGCAACCGCACCGCGGCGGCTCCTTCCCTTCCTCCAG ACCAACCAGATTGTGGGATCTTCCTAGAGAGCGCTGTTGTCCTGCACGAGTAGAATAGCAGATGGCGAGGATAAAGCCGAAGCAATTGCTAATTCAAAGCAAGACGAAGAAGGCCCCAACACGGATCAGTTACTCCACTATCGTTACTTGGAACCTAATTGTTATCTTGGTTGCGCTATCCCTCTATGCTACCTACAGGCATTGGCATCACAGGCCAATGC TCGAGACTGAAATGGATCTCCCTCGTGCTGAGCATGTTGGAAGATCTGAGGATTCCACGAAGACTAGTAGACCAAGCTATGCGGTTATTGATACTGCCAAAGGCTCAATTACTATAGAAATTTACAAAGATGCTTCTGCTGATGTTGTGGATAGATTTGTTAGCTTGTGCAAGAGTAACCATTTTAAAGGAATGCCGTTTCGTCATGTCATCAAAAACTTTGTAATTCAAGGGGGTGATTTCGATTTCAATGGTGCTGCCCAGGAATGGATACTGAAAGCCAAAGCCAGTGGAGAAAACGCTCTAAGTCCAAAGCACGAGGCATTCATGATCGGGACTACGAAGAATCCTAATAATAAAGGATTTGATCTTTTTATCACAACTGCTCCAATTCCTGACTTGAATGACAAGCTTGTTGTATTTGGGCAAGTTATCAATGGACA AGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCATTACCAGCCAAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCA AGCTTTGAGCTGATAGCTTGTTGTCCTTACCTAAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCCAATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTTGGA ]
[+] EMBL AU197236 [ ACACAACCAATCCACCTCCGATTCCTTCATCCGCCGCCACCGCCGCCGTCGCCGCCGCCGGGATCCCGCCCGCAACCGCACCGCGTCGGCTCCTTCCCTTCCT CCAGATTGTGGGATCTTCCTAGAGAGCGCTGTTGTCCTGCACGAGTAGAATAGCAGATGGCGAGGATAAAGCCGAAGCAATTGCTAATTCAAAGCAAGACGAAGAAGGCCCCAACACGGATCAGTTACTCCACTATCGTTACTTGGAACCTAATTGTTATCTTGGTTGCGCTATCCCTCTATGCTACCTACAGGCATTGGCATCACAGGNCAATGCTTCGAGACTta ]
[+] EMBL CF308740 [ CACCTCCGATTCCTTCATCCGCCGCCACCGCCGCCGTCGCCGCCGCCGGGATCCCTCCCGCAACCGCACCGCGGCGGCTCCTTCCCTTCCTCCAGGTACCAACCAGATTGTGGGATCTTCCTAGAGAGCGCTGTTGTCCTGCACGAGTAGAATAGCAGATGGCGAGGATAAAGCCGAAGCAATTGCTAATTCAAAGCAAGACGAAGAAGGCCCCAACACGGATCAGTTACTCCACTATCGTTACTTGGAACCTAATTGTTATCTTGGTTGCGCTATCCCTCTATGCTACCTACAGGCATTGGCATCACAGGCCAATGC TCGAGACTGAAATGGATCTCCCTCGTGCTGAGCATGTTGGAAGATCTGAGGATTCCACGAAGACTAGTAGACCAAGCTATGCGGTTATTGATACTGCCAAAGGCTCAATTACTATAGAAATTTACAAAGATGCTTCTGCTGATGTTGTGGATAGATTTGTTAGCTTGTGCAAGAGTAACCATTTTAAAGGAATGCCGTTTCGTCATGTCATCAAAAAC ]
[+] EMBL CA762216 [ GGGGTGATTTCGATTTCAATGGTGCTGCCCAGGAATGGATACTGAAAGCCAAAGCCAGTGGAGAAAACGCTCTAAGTCCAAAGCACGAGGCATTCATGATCGGGACTACGAAGAATCCTAATAATAAAGGATTTGATCTTTTTATCACAACTGCTCCAATTCCTGACTTGAATGACAAGCTTGTTGTATTTGGGCAAGTTATCAATGGACA AGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCATTACCAGCCAAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCA AGCTTTGAGCTGATAGCTTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCCAATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCGTTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTTGGAATCCATAGTTAGTTATGAGGAATAAGTTCATCTGAGGTCCCTTAAAAAAAAAA]
[-] EMBL CF308741 [ CGAGGCATTCATGATCGGGACTACGAAGAATCCTAATAATAAAGGATTTGATCTTTTTATCACAACTGCTCCAATTCCTGACTTGAATGACAAGCTTGTTGTATTTGGGCAAGTTATCAATGGACA AGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCATTACCAGCCAAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCA AGCTTTGAGCTGATAGCTTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCCAATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTTGGAATTCATAGTTAGTTAaaaaaa ]
[+] EMBL BI811847 [ ACACAGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCCTTACCCGCCCAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCACAGCTTTGAGCTGATAGCTTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCCAGAGGGTCCATACATCGCCTCCCATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCCAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCCTTTGGATCATGAATCATAGAACTTGGAATCCATAGTTAGTTATGAGGAATAAaaaaaaaa ]
[+] EMBL CF311658 [ GCTGATAGCTTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCCAATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTTGGAATTCATAGTTAaaaa ]
[+] EMBL CF311008 [ CTGATAGCTTGTTGCCCCTACCTGAGAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCCAATAGCTGCTGAAATCGATCATGATTATGGCTTCCTCTACAAGCCCATGG ]
[+] EMBL CF301922 [ GTACTCCAAGAGGGTCCATACATCGCCTCCAATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCTTTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTTGGAATTCATAGTTAGTTATGAGGAATAAGTTCATCTGAG ]
consensusID : consensus_12100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence
[CGAGATTCCAYTDNGACTAGTAGACCAAGCTATGCGBBNTATTGATACTGCCANNGGCTCARTTACTATAGAAATTTACAAAGATGCTTCTGCTGATGTTGTGGATAGATTTGTTAGCTTGTRCAAGAGTAACCATTTTAAAGGAATGCCGTTTCGWCATGTCATCAAAAACTTTGTAATTCARGGGGGTGWTTTCGWTTWCAATGGTGCTCCCCAGGAATGGATACTGAAAGCCAAAGCCAGGTGGAGAAAACCBTTCTARCGYCCAAASGACGGRGBCATKCAYCGVCCCGBSCCTASGD]
[+] EMBL BE230732 [CGAGATTCCAYTDNGACTAGTAGACCAAGCTATGCGBBNTATTGATACTGCCANNGGCTCARTTACTATAGAAATTTACAAAGATGCTTCTGCTGATGTTGTGGATAGATTTGTTAGCTTGTRCAAGAGTAACCATTTTAAAGGAATGCCGTTTCGWCATGTCATCAAAAACTTTGTAATTCARGGGGGTGWTTTCGWTTWCAATGGTGCTCCCCAGGAATGGATACTGAAAGCCAAAGCCAGGTGGAGAAAACCBTTCTARCGYCCAAASGACGGRGBCATKCAYCGVCCCGBSCCTASGD]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12100#0 AACCCAACCTCAAACACAACCAATCCACCTCCGATTCCTTCATCCGCCGCCACCGCCGCC 60
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 GTCGCCGCCGCCGGGATCCCGCCCGCAACCGCACCGCGGCGGCTCCTTCCCTTCCTCCAG 120
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 ACCAACCAGATTGTGGGATCTTCCTAGAGAGCGCTGTTGTCCTGCACGAGTAGAATAGCA 180
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 GATGGCGAGGATAAAGCCGAAGCAATTGCTAATTCAAAGCAAGACGAAGAAGGCCCCAAC 240
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 ACGGATCAGTTACTCCACTATCGTTACTTGGAACCTAATTGTTATCTTGGTTGCGCTATC 300
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 CCTCTATGCTACCTACAGGCATTGGCATCACAGGCCAATGCTCGAGACTGAAATGGATCT 360
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 CCCTCGTGCTGAGCATGTTGGAAGATCTGAGGATTCCACGAAGACTAGTAGACCAAGCTA 420
consensus_12100#1 ----------------------------CGAGATTCCAYTDNGACTAGTAGACCAAGCTA 32
******* ******************
consensus_12100#0 TGCGGTT-ATTGATACTGCCAAAGGCTCAATTACTATAGAAATTTACAAAGATGCTTCTG 479
consensus_12100#1 TGCGBBNTATTGATACTGCCANNGGCTCARTTACTATAGAAATTTACAAAGATGCTTCTG 92
**** ************* ****** ******************************
consensus_12100#0 CTGATGTTGTGGATAGATTTGTTAGCTTGTGCAAGAGTAACCATTTTAAAGGAATGCCGT 539
consensus_12100#1 CTGATGTTGTGGATAGATTTGTTAGCTTGTRCAAGAGTAACCATTTTAAAGGAATGCCGT 152
****************************** *****************************
consensus_12100#0 TTCGTCATGTCATCAAAAACTTTGTAATTCAAGGGGGTGATTTCGATTTCAATGGTGCTG 599
consensus_12100#1 TTCGWCATGTCATCAAAAACTTTGTAATTCARGGGGGTGWTTTCGWTTWCAATGGTGCTC 212
**** ************************** ******* ***** ** **********
consensus_12100#0 CCCAGGAATGGATACTGAAAGCCAAAGCCAG-TGGAGAAAAC-GCTCTAA-GTCCAAAGC 656
consensus_12100#1 CCCAGGAATGGATACTGAAAGCCAAAGCCAGGTGGAGAAAACCBTTCTARCGYCCAAASG 272
******************************* ********** **** * *****
consensus_12100#0 ACG-AGGCATTCAT--GATCGGGACTACGAAGAATCCTAATAATAAAGGATTTGATCTTT 713
consensus_12100#1 ACGGRGBCATKCAYCGVCCCGBSCCTASGD------------------------------ 302
*** * *** ** ** *** *
consensus_12100#0 TTATCACAACTGCTCCAATTCCTGACTTGAATGACAAGCTTGTTGTATTTGGGCAAGTTA 773
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 TCAATGGACAAGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCATTACCAGC 833
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 CAAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCAAGCTTTGAGCTGATAGC 893
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 TTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCC 953
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 AATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGA 1013
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 AAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGT 1073
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 GTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTT 1133
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 TGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTT 1193
consensus_12100#1 ------------------------------------------------------------
consensus_12100#0 GGAATTCATAGTTAGTTATGAGGAATAAGTTCATCTGAGGTCCCTTAAAAAAAAAA 1249
consensus_12100#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||