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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1159 fasta sequence
[TTGCATCATGCGTCCTCACTTGGCCTGCCTCCCTCCACGCTCCTCCGTCTCCTACCCCTTTCTCGCCTTCCCCAACTTTATCCTCGCTCACTTTCCATCTCACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCGGATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATGTTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATTCAGTCTATCCTGCCGACATTGTTCGAGGGTAATCCTTCGCTGAGAAATGCACATGGACTCCTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAGCCTTCGGGCTACAGCTCGGGCTCAGCTTCTAATCCTCAGCCACAACATCTGGGGTTTGCTTCTCTGTGATTAGCTCTCAGAGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTTGTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGGATTGTGTATTGACGACAACGAATTCCATCGTGTTGCGCTGATAATTGTGTGCTGGGCACTGTCAATTTGACCGAGACAT]
[+] EMBL AK061189 [TTGCATCATGCGTCCTCACTTGGCCTGCCTCCCTCCACGCTCCTCCGTCTCCTACCCCTTTCTCGCCTTCCCCAACTTTATCCTCGCTCACTTTCCATCTCACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCGGATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATGTTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATTCAGTCTATCCTGCCGACATTGTTCGAGGGTAATCCTTCGCTGAGAAATGCACATGGACTCCTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAGCCTTCGGGCTACAGCTCGGGCTCAGCTTCTAATCCTCAGCCACAACATCTGGGGTTTGCTTCTCTGTGATTAGCTCTCAGAGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTTGTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGGATTGTGTATTGACGACAACGAATTCCATCG ]
[+] EMBL AK099311 [ CTCGCCTTCCCCAACTTTATCCTCGCTCACTTTCCATCTCACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCGTGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCGGATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATGTTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATTCAGTCTATCCTGCCGACATTGTTCGAGGGTAATCCTTCGCTGAGAAATGCACATGGACTCCTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAGCCTTCGGGCTACAGCTCGGGCTCAGCTTCTAATCCTCAGCCACAACATCTGGGGTTTGCTTCTCTGTGATTAGCTCTCAGAGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTTGTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGGATTGTGTATTGACGACAACGAATTCCATCG ]
[+] EMBL AK104115 [ CTCGCTCACTTTCCATCTCACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCGGATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATGTTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATTCAGTCTATCCTGCCGACATTGTTCGAGGGTAATCCTTCGCTGAGAAATGCACATGGACTCCTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAGCCTTCGGGCTACAGCTCGGGCTCAGCTTCTAATCCTCAGCCACAACATCCGGGGTTTGCTTCTCTGTGATTAGCTCTCAGAGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTTGTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGGATTGTGTATTGACGACAACGAATTCCATC ]
[+] EMBL AK058690 [ CTCACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCGGATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATGTTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATTCAGTCTATCCTGCCGACATTGTTCGAGGGTAATCCTTCGCTGAGAAATGCACATGGACTCCTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAGCCTTCGGGCTACAGCTCGGGCTCAGCTTCTAATCCTCAGCCACAACATCTGGGGTTTGCTTCTCTGTGATTAGCTCTCAGAGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTTGTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGGATTGTGTATTGACGACAACGAATTCCATCGTGTTGCGCTGATAATTGTGTGCTGGGCACTGTCAATTTGACCGAGACAT]
[+] EMBL CF324824 [ ACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTT ]
[+] EMBL CF326306 [ ACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCC ]
[+] EMBL AU076274 [ ACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAG GGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGAC ]
[+] EMBL BF430661 [ TACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCGGATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATGTTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGGATCATCGGCCTTGCACTCCTTACCATTCAGTCTA ]
[+] EMBL AU076275 [ GCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGNCAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATTCAGTCTATCCTGCCGACATTGTTCGNGGGTAATCCTTCGCTGAGAAATGCACATGGACTCCTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAG CTTCGGGCTACAGCTCGGGCTCAGCTTCTAATCCTCAGCCACAACATCTGGGGTTTGCTTCTCTGTGATTAGCTCTCAGAGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTTGTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGGATTGTGTATTGACGACAACGAATTCaaaaa ]
consensusID : consensus_12103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 107 fasta sequence
[CGAGCTACGCCANTGTCCTGCGCCCGCACGTCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCNGTGCCACCTACGCCGCCCGGGCAGCATGCG]
[+] EMBL D43535 [CGAGCTACGCCANTGTCCTGCGCCCGCACGTCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCNGTGCCACCTACGCCGCCCGGGCAGCATGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12103#0 TTGCATCATGCGTCCTCACTTGGCCTGCCTCCCTCCACGCTCCTCCGTCTCCTACCCCTT 60
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 TCTCGCCTTCCCCAACTTTATCCTCGCTCACTTTCCATCTCACACGACGGCCACACTGAC 120
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 GAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCG 180
consensus_12103#1 ----------------------------------------------------------CG 2
**
consensus_12103#0 AGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGT 240
consensus_12103#1 AGCTACGCCANTGTCCTGCGCCCGCACGTCTCGTCGACGAGGACTCCGCGCGGGCCTCGT 62
********* **************** *******************************
consensus_12103#0 CGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGG 300
consensus_12103#1 CGTCCCGCGGGCGCNGTGCCACCTACGCCGC-CCGGGCAGCA-TGCG------------- 107
************** **************** ********* ****
consensus_12103#0 TCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAG 360
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 CCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTG 420
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 GCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTG 480
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 GTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCC 540
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 GTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCG 600
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 GATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATG 660
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 TTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAA 720
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 CCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATT 780
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 CAGTCTATCCTGCCGACATTGTTCGAGGGTAATCCTTCGCTGAGAAATGCACATGGACTC 840
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 CTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAGCCTTCGGGCTACAGCTCGGG 900
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 CTCAGCTTCTAATCCTCAGCCACAACATCTGGGGTTTGCTTCTCTGTGATTAGCTCTCAG 960
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 AGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTT 1020
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 GTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGG 1080
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 ATTGTGTATTGACGACAACGAATTCCATCGTGTTGCGCTGATAATTGTGTGCTGGGCACT 1140
consensus_12103#1 ------------------------------------------------------------
consensus_12103#0 GTCAATTTGACCGAGACAT 1159
consensus_12103#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||