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Oryza sativa
cluster # 12104 cluster # 12104       Sequences # 10       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12104#0 length = 1484 sequences # 8  
 consensus_12104#1 length = 366 sequences # 1  
consensus_12104#2 length = 356 sequences # 1  
consensusID : consensus_12104#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1484
fasta sequence 
                              [TCTCGCCTTTTTCACAGCGAATTTCCCCCACCCGTCCCCATCGCAGAGAGGCAGAGAGAATCCACACTCCAAAACCCACCGTTCCCCATGGAGAAGGGCGACGAAACCCTCGCCTACCCCGCCGCCGCCGCCGGCGGCCAGAAGACCGCGCCCATCGGATGCTTCGCCGGCGACGACGTTGCCGCCACCACCGACGGGCACCCCACCAAGTCCTACGCCGCCGTCGCCGCCGAGAAGACCTTGCCCAACGGCAGCGTCGAGGAGGACGAGGTCACCGTCACCGCCGCCGAGAACCCCGCCAAGTCCTACGCCGCCGTCGTCGCTGAGAAGACCAGCCCCAACGGCAGCGTCGCGGAGGACGAGGTCACCGTCACCGCCGCCGAGAACCGCGCCAAGTCCTACGCCGACGTCGCCGCCGAGAAGACCTACCCCAACGGCAACGTCGAGGAGGACGAGGTCTCCGTCACCGCGGCCGTGAACCCCGCCAAGTCCTACGCCACCGTCGCCGCCGAGAAGACCGTGCCGGACGGCAGCGTTGCGGAGGATGAGGTCACCGTCACCGCCCCGGTGAACCCCGCCAAGTCCTACGCCGCCGTCGCCGCCAACGCCGAGATCGAGGACCTCCGCACCACCAATCACGACCTGGAGGAGAAGCTCGCCGCTGCCGACCGTGAGAAGAAGGGGCGTGCCACGGAGATCGACGGCCTGAAGGACACCTCCGATAAGGCCAAGCAGAACTCGGTCGTCTTCCAGTACATCGCCTCTTCTTCCGACGCGAAGGTGCTTGCGCTCCGCGAGGAGCTCGAGGATCTGCAGAAACTCCTCCAAGCAGAGAAAGATGAATTCAAGGCGGACAAGCGCGACTCCAATCAGCTCGCCGGCAAGGTGGGGTCCGAACGCGCGGTGAAGATGAGGCTCGAGGAGGAGGTGATTGCCATGAAGGAGAGGGCCAGGGCCAGGGCCGCCGCTGCCGCTGCCGCTGCCGCTGCGGAGGACGAGAGGGTGGCTGCTCCGACACCTGGGACCCTGCAGGGAGCGCGGGTCGCGTGGCCGGTGATGGCTGGAGCTGCGGCCGTCGGCGCCGCCGCGGCAGCTGTTGCCGTGGTGATCTTCCTCCGCCTCAAGAGGTAAACTGGTGATCTGATGCACAGGAAGTTTTGCTCTGCTGCGACAGCCTATGGAAGATTTGATGAGTTTTTTTGTGGTGATGAACTGATGATGGT-AGAGTGCTGGATGAGAATAGTATGACTTCTATGAGCTAGTTGCTTAATAGCCTACAGAAACATAGGGATCTGAACACTTGTTATGTTCCATTCCTGTTTTTCCTTTTATCATTCTACCTTCTTCGGTGGTGACGCTAAATGTCTGAAACAATTTGTGATGCGTAACTGAGGAACGCCGAATGGTTGCTGTGCGGTTATGCTTTTTCTCCATTCTGAGCTTCTCATTACTTCTTACTGATGGTTTGCAGTTTGCATAAAAAA]

[+] EMBL AK067215             [TCTCGCCTTTTTCACAGCGAATTTCCCCCACCCGTCCCCATCGCAGAGAGGCAGAGAGAATCCACACTCCAAAACCCACCGTTCCCCATGGAGAAGGGCGACGAAACCCTCGCCTACCCCGCCGCCGCCGCCGGCGGCCAGAAGACCGCGCCCATCGGATGCTTCGCCGGCGACGACGTTGCCGCCACCACCGACGGGCACCCCACCAAGTCCTACGCCGCCGTCGCCGCCGAGAAGACCTTGCCCAACGGCAGCGTCGAGGAGGACGAGGTCACCGTCACCGCCGCCGAGAACCCCGCCAAGTCCTACGCCGCCGTCGTCGCTGAGAAGACCAGCCCCAACGGCAGCGTCGCGGAGGACGAGGTCACCGTCACCGCCGCCGAGAACCGCGCCAAGTCCTACGCCGACGTCGCCGCCGAGAAGACCTACCCCAACGGCAACGTCGAGGAGGACGAGGTCTCCGTCGCCGCGGCCGTGAACCCCGCCAAGTCCTACGCCACCGTCGCCGCCGAGAAGACCGTGCCGGACGGCAGCGTTGCGGAGGATGAGGTCACCGTCACCGCCCCGGTGAACCCCGCCAAGTCCTACGCCGCCGTCGCCGCCAACGCCGAGATCGAGGACCTCCGCACCACCAATCACGACCTGGAGGAGAAGCTCGCCGCTGCCGACCGTGAGAAGAAGGGGCGTGCCACGGAGATCGACGGCCTGAAGGACACCTCCGATAAGGCCAAGCAGAACTCGGTCGTCTTCCAGTACATCGCCTCTTCTTCCGACGCGAAGGTGCTTGCGCTCCGCGAGGAGCTCGAGGATCTGCAGAAACTCCTCCAAGCAGAGAAAGATGAATTCAAGGCGGACAAGCGCGACTCCAATCAGCTCGCCGGCAAGGTGGGGTCCGAACGCGCGGTGAAGATGAGGCTCGAGGAGGAGGTGATTGCCATGAAGGAGAGGGCCAGGGCCAGGGCCGCCGCTGCCGCTGCCGCTGCCGCTGCGGAGGACGAGAGGGTGGCTGCTCCGACACCTGGGACCCTGCAGGGAGCGCGGGTCGCGTGGCCGGTGATGGCTGGAGCTGCGGCCGTCGGCGCCGCCGCGGCAGCTGTTGCCGTGGTGATCTTCCTCCGCCTCAAGAGGTAAACTGGTGATCTGATGCACAGGAAGTTTTGCTCTGCTGCGACAGCCTATGGAAGATTTGATGAGTTTTTTTGTGGTGATGAACTGATGATGGT AGAGTGCTGGATGAGAATAGTATGACTTCTATGAGCTAGTTGCTTAATAGCCTACAGAAACATAGGGATCTGAACACTTGTTATGTTCCATTCCTGTTTTTCCTTTTATCATTCTACCTTCTTCAGTGGTGACGCTAAATGTCTGAAACAATTTGTGATGCGTAACTGAGGAACGCCGAATGGTTGCTGTGCGGTTATG                                                              ]
[+] EMBL AK104701             [ CTCGCCTTTTTCACAGCGAATTTCCCCCACCCGTCCCCATCGCAGAGAGGCAGAGAGAATCCACACTCCAAAACCCACCGTTCCCCATGGAGAAGGGCGACGAAACCCTCGCCTACCCCGCCGCCGCCGCCGGCGGCCAGAAGACCGCGCCCATCGGATGCTTCGCCGGCGACGACGTTGCCGCCACCACCGACGGGCACCCCACCAAGTCCTACGCCGCCGTCGCCGCCGAGAAGACCTTGCCCAACGGCAGCGTCGAGGAGGACGAGGTCACCGTCACCGCCGCCGAGAACCCCGCCAAGTCCTACGCCGCCGTCGTCGCTGAGAAGACCAGCCCCAACGGCAGCGTCGCGGAGGACGAGGTCACCGTCACCGCCGCCGAGAACCGCGCCAAGTCCTACGCCGACGTCGCCGCCGAGAAGACCTACCCCAACGGCAACGTCGAGGAGGACGAGGTCTCCGTCACCGCGGCCGTGAACCCCGCCAAGTCCTACGCCACCGTCGCCGCCGAGAAGACCGTGCCGGACGGCAGCGTTGCGGAGGATGAGGTCACCGTCACCGCCCCGGTGAACCCCGCCAAGTCCTACGCCGCCGTCGCCGCCAACGCCGAGATCGAGGACCTCCGCACCACCAATCACGACCTGGAGGAGAAGCTCGCCGCTGCCGACCGTGAGAAGAAGGGGCGTGCCACGGAGATCGACGGCCTGAAGGACACCTCCGATAAGGCCAAGCAGAACTCGGTCGTCTTCCAGTACATCGCCTCTTCTTCCGACGCGAAGGTGCTTGCGCTCCGCGAGGAGCTCGAGGATCTGCAGAAACTCCTCCAAGCAGAGAAAGATGAATTCAAGGCGGACAAGCGCGACTCCAATCAGCTCGCCGGCAAGGTGGGGTCCGAACGCGCGGTGAAGATGAGGCTCGAGGAGGAGGTGATTGCCATGAAGGAGAGGGCCAGGGCCAGGGCCGCCGCTGCCGCTGCCGCTGCCGCTGCGGAGGACGAGAGGGTGGCTGCTCCGACACCTGGGACCCTGCAGGGAGCGCGGGTCGCGTGGCCGGTGATGGCTGGAGCTGCGGCCGTCGGCGCCGCCGCGGCAGCTGTTGCCGTGGTGATCTTCCTCCGCCTCAAGAGGTAAACTGGTGATCTGATGCACAGGAAGTTTTGCTCTGCTGCGACAGCCTATGGAAGATTTGATGAGTTTTTTTGTGGTGATGAACTGATGATGGT AGAGTGCTGGATGAGAATAGTATGACTT TATGAGCTAGTTGCTTAATAGCCTACAGAAACATAGGGATCTGAACACTTGTTATGTTCCATTCCTGTTTTTCCTTTTATCATTCTACCTTC                                                                                                                                            ]
[+] EMBL AU069336             [             ACAGCGAATTTCCCCCACCCGTCCCCATCGCAGAGAGGCAGAGAGAATCCACACTCCAAAACCCACCGTTCCCCATGGAGAAGGGCGACGAAACCCTCGCCTACCCCGCCGCCGCCGCCGG GNCAGGAAGACCGCGCCCATCGGATGCTTCGCCGGCGACGACGTTGCCGCCACCACCGACGGGCACCCCACCAAGTCCTACGCCGCCGTCGCCGCCGAGAAGACCTTGCCCAACGGCAGCGTCGAGGAGGACGAGGTCACCGTCACCGCCGCCGAGAACNCCGCCAAGT CTACGCCGCCGTCGTCGCTGAGAAGACCAGCCCCAACGGCAGCNTCGCGGAGGACGAGGTCACCGTCAACGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB668534             [                                                                             ACCGCCCTCCATGGAGAAGGGCGACGAAACCCTCGCCTACCCCGCCGCCGCCGCCGGCGGCCAGAAGACCGCGCCCATCGGATGCTTCGCCGGCGACGACGTTGCCGCCACCACCGACGGGCACCCCACCAAGTCCTACGCCGCCGTCGCCGCCGAGAAGACCTTGCCCAACGGCAGCGTCGAGGAGGACGAGGTCACCGTCACCGCCGCCGAGAACCCCGCCAAGTCCTACGCCGCCGTCGTCGCTGAGAAGACCAGCCCCAACGGCAGCGTCGCGGAGGACGAGGTCACCGTCACCGCCGCCGAGAACCGCGCCAAGTCCTACGCCGACGTCGCCGCCGAGAAGACCTACCCCAACGGCAACGTCGAGGAGGACGAGGTCTCCGTCACCGCGGCCGTGAACCCCGCCAAGTCCTACGCCACCGTCGCCGCCGAGAAGACCGTGCCGGACGGCAGCGTTGCGGAGGATGAGGTCACCGTCACCGCCCCGGTGAACCCCGCCAAGTCCTACGCCGCCGTCGCCGCCAACGCCGAGATCGAGGACCTCCGCACCACCAATCACGACCTGGAGGAGAAGCTCGCCGCTGCCGACCGTGAGAAGAAGGGGCGTGCCACGGAGATCGACGGCCTGAAGGACACCTCCGATAAGGCCAAGCAGAACTCGGTCGTCTTCCAGTACATCGCCTCTTCTTCCGACGCGAAGGTGCTTGCGCTCCGCGAGGAGCTCGAGGATCTGCAGAAACTCCTCCAAGCAGAGAAAGATGAATTCAAGGCGGACAAGCGCGACTCCAATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB668535             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GACCGTGAGAAGAAGGGGCGTGCCACGGAGATCGACGGCCTGAAGGACACCTCCGATAAGGCCAAGCAGAACTCGGTCGTCTTCCAGTACATCGCCTCTTCTTCCGACGCGAAGGTGCTTGCGCTCCGCGAGGAGCTCGAGGATCTGCAGAAACTCCTCCAAGCAGAGAAAGATGAATTCAAGGCGGACAAGCGCGACTCCAATCAGCTCGCCGGCAAGGTGGGGTCCGAACGCGCGGTGAAGATGAGGCTCGAGGAGGAGGTGATTGCCATGAAGGAGAGGGCCAGGGCCAGGGCCGCCGCTGCCGCTGCCGCTGCCGCTGCGGAGGACGAGAGGGTGGCTGCTCCGACACCTGGGACCCTGCAGGGAGCGCGGGTCGCGTGGCCGGTGATGGCTGGAGCTGCGGCCGTCGGCGCCGCCGCGGCAGCTGTTGCCGTGGTGATCTTCCTCCGCCTCAAGAGGTAAACTGGTGATCTGATGCACAGGAAGTTTTGCTCTGCTGCGACAGCCTATGGAAGATTTGATGAGTTTTTTTGTGGTGATGAACTGATGATGGT AGAGTGCTGGATGAGAATAGTATGACTTCTATGAGCTAGTTGCTTAATAGCCTACAGAAACATAGGGATCTGAACACTTGTTATGTTCCATTCCTGTTTTTCCTTTTATCATTCTACCTTCTTCGGTGGTGACGCTAAATGTCTGAAACAATTTGTGATGAGTAACTGAGGAACGCCGAATGG                                                                              ]
[+] EMBL OSS16512A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ntncnaattGCGNACAANCNCGACTCCAATNANCTCGCCGGCAAGGTGGGGTCCGAACGCNCGGTGAAGATNAGGCTCGAGGAGGAGGTGATTNCCATGAAGGAGAGGGCCAGGGCCAGGNCCGCCGCTGCCGCTGCCGCTGCCGCTGCGGAGGACGANAGGNTGGCTGCTCCGACACCTGGGACCCTGCAGGGAGCGCGGNTCGCTTGGCCGGTNATGGCTGGAGCTGCGGCCGTCGGCGCCGCCGCGGCAGCTNTTGCCGTGGTGATCTTCCTCCGCNTCAAGAGGTAAACTGGTGATCTNATGCACAGGAAGTTTTGCTCTGCTGCGACAACCTATGGAAGATTTGATGAGTTTTTTTTGGGTGATGAACT ATGATGGTAAGANTTCTGGATGAGAATAGTATGACTTCTATaa                                                                                                                                                                                                                                   ]
[+] EMBL BP184489             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCGGACAAGCGCGACTCCAATCAGCTCGCCGGCAAGGTGGGGTCCGAACGCGCGGTGAAGATGAGGCTCGAGGAGGAGGTGATTGCCATGAAGGAGAGGGCCAGGGCCAGGGCCGCCGCTGCCGCTGCCGCTGCCGCTGCGGAGGACGAGAGGGTGGCTGCTCCGACACCTGGGACCCTGCAGGGAGCGCGGGTCGCGTGGCCGGTGATGGCTGGAGCTGCGGCCGTCGGCGCCGCCGCGGCAGCTGTTGCCGTGGTGATCTTCCTCCGCCTCAAGAGGTAAACTGGTGATCTGATGCACAGGAAGTTTTGCTCTGCTGCGACAGCCTATGGAAGATTTGATGAGTTTTTTTGTGGTGATGAACTGATGATGGT AGAGTGCTGGATGAGAATAGTATGACTTCTATGAGCTAGTTGCTTAATAGCCTACAGAAACATAGGGATCTGAACACTTGTTATGTTCCATTCCTGTTTTTCCTTTTATCATTCTACCTTCTTCGGTGGTGACGCTAAATGTCTGAAACAATTTGTGATGCGTAACTGAGGAACGCCGAATGGTTGCTGTGCGGTTATGCTTTTTCTCCATTCTGAGCTTCTCATTACTTCTTACTGATGGTTTGCAGTTTGCATAAAAAA]
[-] EMBL D42505               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GATGANCTGGTGATGGT AGAGNGCNGGATGAGCATAGTATGACTTCTATGAGCTAGTNGCTTAATAGCCNACAGAAACATAGGGNNCTGAACACTTGTTATGTTCCATTCCTGTTTTTCCTTTTATCATTCTACCTTCTTCGGTGGTGACGCTAAATGTCTGAAACAATTTGTGATGNGNAACTGAGGAACGCCGAATGGTTGCTGTGCGGTTATG                                                              ]




>consensus_12104#0
TCTCGCCTTTTTCACAGCGAATTTCCCCCACCCGTCCCCATCGCAGAGAGGCAGAGAGAA
TCCACACTCCAAAACCCACCGTTCCCCATGGAGAAGGGCGACGAAACCCTCGCCTACCCC
GCCGCCGCCGCCGGCGGCCAGAAGACCGCGCCCATCGGATGCTTCGCCGGCGACGACGTT
GCCGCCACCACCGACGGGCACCCCACCAAGTCCTACGCCGCCGTCGCCGCCGAGAAGACC
TTGCCCAACGGCAGCGTCGAGGAGGACGAGGTCACCGTCACCGCCGCCGAGAACCCCGCC
AAGTCCTACGCCGCCGTCGTCGCTGAGAAGACCAGCCCCAACGGCAGCGTCGCGGAGGAC
GAGGTCACCGTCACCGCCGCCGAGAACCGCGCCAAGTCCTACGCCGACGTCGCCGCCGAG
AAGACCTACCCCAACGGCAACGTCGAGGAGGACGAGGTCTCCGTCACCGCGGCCGTGAAC
CCCGCCAAGTCCTACGCCACCGTCGCCGCCGAGAAGACCGTGCCGGACGGCAGCGTTGCG
GAGGATGAGGTCACCGTCACCGCCCCGGTGAACCCCGCCAAGTCCTACGCCGCCGTCGCC
GCCAACGCCGAGATCGAGGACCTCCGCACCACCAATCACGACCTGGAGGAGAAGCTCGCC
GCTGCCGACCGTGAGAAGAAGGGGCGTGCCACGGAGATCGACGGCCTGAAGGACACCTCC
GATAAGGCCAAGCAGAACTCGGTCGTCTTCCAGTACATCGCCTCTTCTTCCGACGCGAAG
GTGCTTGCGCTCCGCGAGGAGCTCGAGGATCTGCAGAAACTCCTCCAAGCAGAGAAAGAT
GAATTCAAGGCGGACAAGCGCGACTCCAATCAGCTCGCCGGCAAGGTGGGGTCCGAACGC
GCGGTGAAGATGAGGCTCGAGGAGGAGGTGATTGCCATGAAGGAGAGGGCCAGGGCCAGG
GCCGCCGCTGCCGCTGCCGCTGCCGCTGCGGAGGACGAGAGGGTGGCTGCTCCGACACCT
GGGACCCTGCAGGGAGCGCGGGTCGCGTGGCCGGTGATGGCTGGAGCTGCGGCCGTCGGC
GCCGCCGCGGCAGCTGTTGCCGTGGTGATCTTCCTCCGCCTCAAGAGGTAAACTGGTGAT
CTGATGCACAGGAAGTTTTGCTCTGCTGCGACAGCCTATGGAAGATTTGATGAGTTTTTT
TGTGGTGATGAACTGATGATGGTAGAGTGCTGGATGAGAATAGTATGACTTCTATGAGCT
AGTTGCTTAATAGCCTACAGAAACATAGGGATCTGAACACTTGTTATGTTCCATTCCTGT
TTTTCCTTTTATCATTCTACCTTCTTCGGTGGTGACGCTAAATGTCTGAAACAATTTGTG
ATGCGTAACTGAGGAACGCCGAATGGTTGCTGTGCGGTTATGCTTTTTCTCCATTCTGAG
CTTCTCATTACTTCTTACTGATGGTTTGCAGTTTGCATAAAAAA

consensusID : consensus_12104#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence 
                              [CGCGCGNTGGGCCCGCGTGATATGGCCTCGGAGCCTCGCGGCCCGCTCCGGCGCCCGCCCGCCGGCACGCCTCGTTGCCCGCTGGTAGATCTTCCTCCCGCCCTCCACAGAGGGTATAACCCGGTGATTCTGATGCCACCACGGAAGTTTTGCTTCTGCTGCGACCACGCCCTATGGAAGATTTGGTGAGTTTTTTTGTGGTGATGAACTGATGATGGTAGAGTGCTGATGAGAATAGTATGACTTCTATGAGCTAGTTGCTTAATAGCCTACAGAAAACATAGGGATCTGAACACCTTGTTATGTTCCATTCCTGTTTTTCCTTTTATCATTCTACCTTCTTCGGTGGTGACGCTAAAAAAAAAA]

[+] EMBL BQ908103             [CGCGCGNTGGGCCCGCGTGATATGGCCTCGGAGCCTCGCGGCCCGCTCCGGCGCCCGCCCGCCGGCACGCCTCGTTGCCCGCTGGTAGATCTTCCTCCCGCCCTCCACAGAGGGTATAACCCGGTGATTCTGATGCCACCACGGAAGTTTTGCTTCTGCTGCGACCACGCCCTATGGAAGATTTGGTGAGTTTTTTTGTGGTGATGAACTGATGATGGTAGAGTGCTGATGAGAATAGTATGACTTCTATGAGCTAGTTGCTTAATAGCCTACAGAAAACATAGGGATCTGAACACCTTGTTATGTTCCATTCCTGTTTTTCCTTTTATCATTCTACCTTCTTCGGTGGTGACGCTAAAAAAAAAA]




>consensus_12104#1
CGCGCGNTGGGCCCGCGTGATATGGCCTCGGAGCCTCGCGGCCCGCTCCGGCGCCCGCCC
GCCGGCACGCCTCGTTGCCCGCTGGTAGATCTTCCTCCCGCCCTCCACAGAGGGTATAAC
CCGGTGATTCTGATGCCACCACGGAAGTTTTGCTTCTGCTGCGACCACGCCCTATGGAAG
ATTTGGTGAGTTTTTTTGTGGTGATGAACTGATGATGGTAGAGTGCTGATGAGAATAGTA
TGACTTCTATGAGCTAGTTGCTTAATAGCCTACAGAAAACATAGGGATCTGAACACCTTG
TTATGTTCCATTCCTGTTTTTCCTTTTATCATTCTACCTTCTTCGGTGGTGACGCTAAAA
AAAAAA

consensusID : consensus_12104#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence 
                              [TCGGCGCCTCCGCGGCAGCTGTTGCCGTGGTGATCTTNCTCCGCCTCAAGAGGNAAACTGGTGAACGGATGCACAGGAAGNTTTGCTCTGCTNCGACAGCCTATGGAAGATNTGATGAGTNTNTTTGTGGTGATGAACTGATGATGGTAGAGTGCTGGATGAGAATAGTANGACTTCTATGAGCTAGTTGCTTAATAGCCTACAGAAACATAGNGATNTGAACACTTNTTATGGTCCANTCCTGTTTGTCCTTTTANCATTCTACCTTCTTCGGTGGTGACGCTAAATGTCTGAAACAATTTGTGATGCNTAATGAGNAACGCCGAATGGTTGNTNTGANGTTCAAAAANAAANAC]

[+] EMBL AU096918             [TCGGCGCCTCCGCGGCAGCTGTTGCCGTGGTGATCTTNCTCCGCCTCAAGAGGNAAACTGGTGAACGGATGCACAGGAAGNTTTGCTCTGCTNCGACAGCCTATGGAAGATNTGATGAGTNTNTTTGTGGTGATGAACTGATGATGGTAGAGTGCTGGATGAGAATAGTANGACTTCTATGAGCTAGTTGCTTAATAGCCTACAGAAACATAGNGATNTGAACACTTNTTATGGTCCANTCCTGTTTGTCCTTTTANCATTCTACCTTCTTCGGTGGTGACGCTAAATGTCTGAAACAATTTGTGATGCNTAATGAGNAACGCCGAATGGTTGNTNTGANGTTCAAAAANAAANAC]




>consensus_12104#2
TCGGCGCCTCCGCGGCAGCTGTTGCCGTGGTGATCTTNCTCCGCCTCAAGAGGNAAACTG
GTGAACGGATGCACAGGAAGNTTTGCTCTGCTNCGACAGCCTATGGAAGATNTGATGAGT
NTNTTTGTGGTGATGAACTGATGATGGTAGAGTGCTGGATGAGAATAGTANGACTTCTAT
GAGCTAGTTGCTTAATAGCCTACAGAAACATAGNGATNTGAACACTTNTTATGGTCCANT
CCTGTTTGTCCTTTTANCATTCTACCTTCTTCGGTGGTGACGCTAAATGTCTGAAACAAT
TTGTGATGCNTAATGAGNAACGCCGAATGGTTGNTNTGANGTTCAAAAANAAANAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12104#0      TCTCGCCTTTTTCACAGCGAATTTCCCCCACCCGTCCCCATCGCAGAGAGGCAGAGAGAA 60
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      TCCACACTCCAAAACCCACCGTTCCCCATGGAGAAGGGCGACGAAACCCTCGCCTACCCC 120
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      GCCGCCGCCGCCGGCGGCCAGAAGACCGCGCCCATCGGATGCTTCGCCGGCGACGACGTT 180
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      GCCGCCACCACCGACGGGCACCCCACCAAGTCCTACGCCGCCGTCGCCGCCGAGAAGACC 240
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      TTGCCCAACGGCAGCGTCGAGGAGGACGAGGTCACCGTCACCGCCGCCGAGAACCCCGCC 300
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      AAGTCCTACGCCGCCGTCGTCGCTGAGAAGACCAGCCCCAACGGCAGCGTCGCGGAGGAC 360
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      GAGGTCACCGTCACCGCCGCCGAGAACCGCGCCAAGTCCTACGCCGACGTCGCCGCCGAG 420
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      AAGACCTACCCCAACGGCAACGTCGAGGAGGACGAGGTCTCCGTCACCGCGGCCGTGAAC 480
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      CCCGCCAAGTCCTACGCCACCGTCGCCGCCGAGAAGACCGTGCCGGACGGCAGCGTTGCG 540
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      GAGGATGAGGTCACCGTCACCGCCCCGGTGAACCCCGCCAAGTCCTACGCCGCCGTCGCC 600
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      GCCAACGCCGAGATCGAGGACCTCCGCACCACCAATCACGACCTGGAGGAGAAGCTCGCC 660
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      GCTGCCGACCGTGAGAAGAAGGGGCGTGCCACGGAGATCGACGGCCTGAAGGACACCTCC 720
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      GATAAGGCCAAGCAGAACTCGGTCGTCTTCCAGTACATCGCCTCTTCTTCCGACGCGAAG 780
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      GTGCTTGCGCTCCGCGAGGAGCTCGAGGATCTGCAGAAACTCCTCCAAGCAGAGAAAGAT 840
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      GAATTCAAGGCGGACAAGCGCGACTCCAATCAGCTCGCCGGCAAGGTGGGGTCCGAACGC 900
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      GCGGTGAAGATGAGGCTCGAGGAGGAGGTGATTGCCATGAAGGAGAGGGCCAGGGCCAGG 960
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      GCCGCCGCTGCCGCTGCCGCTGCCGCTGCGGAGGACGAGAGGGTGGCTGCTCCGACACCT 1020
consensus_12104#2      ------------------------------------------------------------
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      GGGACCCTGCAGGGAGCGCGGGTCGCGTGGCCGGTGATGGCTGGAGCTGCGGCCGTCGGC 1080
consensus_12104#2      -------------------------------------------------------TCGGC 5
consensus_12104#1      -----CGCGCGNTGGGCCCGCGTGATATGGCCTCGGAGCCTCGCGGCCCGCTCCGGCGCC 55
                                                                               ** *

consensus_12104#0      GCCGCCGCGGCAG---CTGTTGCCG--TGGT-GATCTTCCTCCGCCTC-------AAGAG 1127
consensus_12104#2      GCCTCCGCGGCAG---CTGTTGCCG--TGGT-GATCTTNCTCCGCCTC-------AAGAG 52
consensus_12104#1      CGCCCGCCGGCACGCCTCGTTGCCCGCTGGTAGATCTTCCTCCCGCCCTCCACAGAGGGT 115
                         * *  *****      ******   **** ****** ****  * *       * *  

consensus_12104#0      GTAAACTGGTGAT-CTGATGC-ACA--GGAAGTTTTGCT-CTGCTGCGACAGC---CTAT 1179
consensus_12104#2      GNAAACTGGTGAA-CGGATGC-ACA--GGAAGNTTTGCT-CTGCTNCGACAGC---CTAT 104
consensus_12104#1      ATAACCCGGTGATTCTGATGCCACCACGGAAGTTTTGCTTCTGCTGCGACCACGCCCTAT 175
                         ** * *****  * ***** **   ***** ****** ***** ****  *   ****

consensus_12104#0      GGAAGATTTGATGAGTTTTTTTGTGGTGATGAACTGATGATGGTAGAGTGCTGGATGAGA 1239
consensus_12104#2      GGAAGATNTGATGAGTNTNTTTGTGGTGATGAACTGATGATGGTAGAGTGCTGGATGAGA 164
consensus_12104#1      GGAAGATTTGGTGAGTTTTTTTGTGGTGATGAACTGATGATGGTAGAGTGCTG-ATGAGA 234
                       ******* ** ***** * ********************************** ******

consensus_12104#0      ATAGTATGACTTCTATGAGCTAGTTGCTTAATAGCCTACAGAAA-CATAGGGATCTGAAC 1298
consensus_12104#2      ATAGTANGACTTCTATGAGCTAGTTGCTTAATAGCCTACAGAAA-CATAGNGATNTGAAC 223
consensus_12104#1      ATAGTATGACTTCTATGAGCTAGTTGCTTAATAGCCTACAGAAAACATAGGGATCTGAAC 294
                       ****** ************************************* ***** *** *****

consensus_12104#0      AC-TTGTTATGTTCCATTCCTGTTTTTCCTTTTATCATTCTACCTTCTTCGGTGGTGACG 1357
consensus_12104#2      AC-TTNTTATGGTCCANTCCTGTTTGTCCTTTTANCATTCTACCTTCTTCGGTGGTGACG 282
consensus_12104#1      ACCTTGTTATGTTCCATTCCTGTTTTTCCTTTTATCATTCTACCTTCTTCGGTGGTGACG 354
                       ** ** ***** **** ******** ******** *************************

consensus_12104#0      CTAAATGTCTGAAACAATTTGTGATGCGTAACTGAGGAACGCCGAATGGTTGCTGTGCGG 1417
consensus_12104#2      CTAAATGTCTGAAACAATTTGTGATGCNTAA-TGAGNAACGCCGAATGGTTGNTNTGANG 341
consensus_12104#1      CTAAA-----AAAAAAA------------------------------------------- 366
                       *****      *** **                                           

consensus_12104#0      TTATGCTTTTTCTCCATTCTGAGCTTCTCATTACTTCTTACTGATGGTTTGCAGTTTGCA 1477
consensus_12104#2      TTCAAAAANAAANAC--------------------------------------------- 356
consensus_12104#1      ------------------------------------------------------------
                                                                                   

consensus_12104#0      TAAAAAA 1484
consensus_12104#2      -------
consensus_12104#1      -------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)