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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12105#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2286 fasta sequence
[AAAAAAAAACGGAAACCCTAGCCGCCACCACTCCCGTGACGGTGCGTCGCTTCCCCCTCCTCGCGCCGCCTCTCCCCGCCACACCGACACCCTGCGCAGTTGCGCCGCCGCTCCATCCTCCAGCACCTAACCTCGCCCCGACACCGCCACATGCTTCGCCGCATGTCCTCCACTTCCTCTCTCTTCTTGCTGCCGATGCCGCTGGGCTCGAGCTAGCGAGTAGGTCGATCTGGCTTTCAATCAGCGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGCGGAGCGGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGTGGTGGTTCACTGGTTCAGGTGGACAATGCCTCGAGCTTGCTAGAAATGGCGTTGGCATGGAGTTCTCCAAGGTGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCTCCATAAGCAGTGGCAAAGCTCCTATTTTTTTCTGGCCACCAGATGGAGGAGGAGTTGTCTCCCATCGCCTAGCCGTTCTCTGGATGCAGCAAGCCATCTCCCATTAGTATCTGATTTTTGCCGTTCTCTGGATGCAGCAAGCCATCTTCCATTGGTATCTGATTTTCGTTTGTATTCCCCACAAAAATTTGAGGTGTTTGTTTTGTGTGGTGTCCTGCCTACAAGGTGTTCGTTGTTTTCCCTACAAGCATGGGAATGTGGCAATCTTACATGACCTGTTAGTGTGTAAGCCTGAATGGTTTGTTGGGCTTTAGATTTGGATCCTAGCTTCCACTTAATTTGCCCTAAACATTTGAACCTACCTTAATGTTAGCAGTTAAAATATCTAATGAAATGCATCATTGAAAATATTCATTTGTAGTTAGCTCTGTAGATGCATGCATTTCATATAGATAATGATTGCTGATAACTGCTTCTTTTGCTAGAATATTTATGTGACTACCTAAATAGCTAACAAACTTCTCCAATTATAATCAGTCATTGCTTGTCCCTGTGATTCATAAATCTGTATGGTTCTTGTGATTCCTGATTGAGTTTTCAAGGAAAATACTAACATTAGGTGGGGAATACTGTGCAAATGATTCTGTCACAGCTGAAAGACACTCTAAAAAACCTCTCATGTATTTCACATTTGAATGCACCATTCAGGTGGGAAGGAGATTACACATTTGTTCATTTTATTTTCCTTTTTTTAGTTAGTTTGATTAGATTAAGGTGCTTAACGAGCTGGATTTGCTGTTAAATTTTAAATGATTTAAACAGCGGGCCATGGGTTCACTATTTGCTAGAGGTGTTCGCATCGTTTAATTCTTACATGCATTCCTTGGGGTCCTACATCTACAATCCTGGTTGCCTTTCTAATTTGAGATAATACAAAGCATGTACAGCCTATATGGCTCTATCGGTTTTCTGATCACAAAATTTGTCTGTATACATCTATTAGTTTTCTGATCACAAAATTTTTGTTACAACATTGAAAATGCTGGTCTATCTATGATTAGAAACTTTGCTGGTTATTTCTGTGTATAACTGCAATATGATGTTATCTATATTTGCGATACAATTCTGCAAATTGCTGATTACAGAAGTTGTCTTGCAAGAGTTGAAAAGGACATGTTTATGTGCTTAGATGTTATTCTGGTTGCTTGATCTGGCATCCTGTCATAATTTGTTTCTAACACTATCAGAACAAAAGGATAGAATATATGTTGCCTAAATGCTGTAATTTTCATGGAAAGAAGCTTGATGATATTGCCACCTCATCCCACAACTATCATGTAAGCTATATTGGTTGTATAGAAAACCAAGCATTTGAGAATTTTTTTTATTGTCAAAGATTCAAAAGCCTTGCCAACCCTTGGTATTGTTTGTATTTTCTGTATTTGGTCTATTTGGTAGTTAAGAAATTCCCTACAAGTCTGATTTGATACTTTATAAATTCATTCTCTTGCAGTCCTGGAGCATTGTTCTGCTTGACGGGTGGACAGGGATAAGTGTGGCCTTTTGTTCTGTAGCTGAAAAAGTGGAAGCTATGTAAGGAATGTTAGCTAGCATATGATCAGAGTGATCTAAGGTTTCAGTCTGTTGGATAGGATTGCGTTGGCTTAATGTTTAAGCTTTTGGGTATAGGTGGAGATCTCTTAGTAGCTTTCTTTTAAGCTGGTAACCCCCAAGCCTTTTGTCTTCTGAAAACATCTCTATGAAAATATTTACAGTTTGTAGTTCAGTAAAGCAATTGATCAACATGAGTATTATATTTTGATATGCGAA]
[+] EMBL AK067735 [AAAAAAAAACGGAAACCCTAGCCGCCACCACTCCCGTGACGGTGCGTCGCTTCCCCCTCCTCGCGCCGCCTCTCCCCGCCACACCGACACCCTGCGCAGTTGCGCCGCCGCTCCATCCTCCAGCACCTAACCTCGCCCCGACACCGCCACATGCTTCGCCGCATGTCCTCCACTTCCTCTCTCTTCTTGCTGCCGATGCCGCTGGGCTCGAGCTAGCGAGTAGGTCGATCTGGCTTTCAATCAGCGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGCGGAGCGGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGTGGTGGTTCACTGGTTCAGGTGGACAATGCCTCGAGCTTGCTAGAAATGGCGTTGGCATGGAGTTCTCCAAGGTGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCTCCATAAGCAGTGGCAAAGCTCCTATTTTTTTCTGGCCACCAGATGGAGGAGGAGTTGTCTCCCATCGCCTAGCCGTTCTCTGGATGCAGCAAGCCATCTCCCATTAGTATCTGATTTTTGCCGTTCTCTGGATGCAGCAAGCCATCTTCCATTGGTATCTGATTTTCGTTTGTATTCCCCACAAAAATTTGAGGTGTTTGTTTTGTGTGGTGTCCTGCCTACAAGGTGTTCGTTGTTTTCCCTACAAGCATGGGAATGTGGCAATCTTACATGACCTGTTAGTGTGTAAGCCTGAATGGTTTGTTGGGCTTTAGATTTGGATCCTAGCTTCCACTTAATTTGCCCTAAACATTTGAACCTACCTTAATGTTAGCAGTTAAAATATCTAATGAAATGCATCATTGAAAATATTCATTTGTAGTTAGCTCTGTAGATGCATGCATTTCATATAGATAATGATTGCTGATAACTGCTTCTTTTGCTAGAATATTTATGTGACTACCTAAATAGCTAACAAACTTCTCCAATTATAATCAGTCATTGCTTGTCCCTGTGATTCATAAATCTGTATGGTTCTTGTGATTCCTGATTGAGTTTTCAAGGAAAATACTAACATTAGGTGGGGAATACTGTGCAAATGATTCTGTCACAGCTGAAAGACACTCTAAAAAACCTCTCATGTATTTCACATTTGAATGCACCATTCAGGTGGGAAGGAGATTACACATTTGTTCATTTTATTTTCCTTTTTTTAGTTAGTTTGATTAGATTAAGGTGCTTAACGAGCTGGATTTGCTGTTAAATTTTAAATGATTTAAACAGCGGGCCATGGGTTCACTATTTGCTAGAGGTGTTCGCATCGTTTAATTCTTACATGCATTCCTTGGGGTCCTACATCTACAATCCTGGTTGCCTTTCTAATTTGAGATAATACAAAGCATGTACAGCCTATATGGCTCTATCGGTTTTCTGATCACAAAATTTGTCTGTATACATCTATTAGTTTTCTGATCACAAAATTTTTGTTACAACATTGAAAATGCTGGTCTATCTATGATTAGAAACTTTGCTGGTTATTTCTGTGTATAACTGCAATATGATGTTATCTATATTTGCGATACAATTCTGCAAATTGCTGATTACAGAAGTTGTCTTGCAAGAGTTGAAAAGGACATGTTTATGTGCTTAGATGTTATTCTGGTTGCTTGATCTGGCATCCTGTCATAATTTGTTTCTAACACTATCAGAACAAAAGGATAGAATATATGTTGCCTAAATGCTGTAATTTTCATGGAAAGAAGCTTGATGATATTGCCACCTCATCCCACAACTATCATGTAAGCTATATTGGTTGTATAGAAAACCAAGCATTTGAGAATTTTTTTTATTGTCAAAGATTCAAAAGCCTTGCCAACCCTTGGTATTGTTTGTATTTTCTGTATTTGGTCTATTTGGTAGTTAAGAAATTCCCTACAAGTCTGATTTGATACTTTATAAATTCATTCTCTTGCAGTCCTGGAGCATTGTTCTGCTTGACGGGTGGACAGGGATAAGTGTGGCCTTTTGTTCTGTAGCTGAAAAAGTGGAAGCTATGTAAGGAATGTTAGCTAGCATATGATCAGAGTGATCTAAGGTTTCAGTCTGTTGGATAGGATTGCGTTGGCTTAATGTTTAAGCTTTTGGGTATAGGTGGAGATCTCTTAGTAGCTTTCTTTTAAGCTGGTAACCCCCAAGCCTTTTGTCTTCTGAAAACATCTCTATGAAAATATTTACAGTTTGTAGTTCAGTAAAGCAATTGATCAACATGAGTATTATATTTTGATATGCGAA]
consensusID : consensus_12105#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1005 fasta sequence
[GCCTCACCCTCCTCGCGCCGCCTCTCCCCGCCCCACCGATGCCCTGCAGCGCCGCTCCATCCTCCGACGCCTGTCCTGGCCCCGACACCGCCGTGCGTCGCCGCATGTCCTCCACTGCCTTTCTCTCTCTCTCTCCTTGCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAGGCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGGGTTAGGTCTTCGTCCTTCTCACTACCTCGTCGTCGATTTACCTGTCTACTCAATACAAGCTCCACGCTGCCTTCCGATCTGGTGGTAGCTGCCGTGCAGCGA-TCGGATCTGGCGAAGGGAGGAGGAGCGCACGGCGGCGTCGACTTGAAGTAGGTTGCTGGCGGCGTCCCCAGCGTGGTGGTGTAGGCCNATGGGCCCAGAGGCGAACGCCTCGAGCTTGCGAGAAGATGGCGTCGGCACGGAGTTCTCGAAGGCGAGGAGTCGGTCTGNCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCTCCATGAGCAGTGGCAAGCTCCTGTTTTTTCTGGTCATCAGAGGGAGGAGGAGTTGTCTCCATCGCCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATCGCATCACGCCATCGTCCACTGGTAACCTCTCATTTATTGCACGTTTGGATGCAACATTTAGGTGGCAAGGAGATTATACATTGGCGATAGCATGGAGCAACAGGCAGAAATGCCATTCT-TTGTTCATTTTATTTTTCCTTTTTTTTAGTTTGATTAGATTATGGTGCTTAAGGAGCTGGATTTGCTGTTAAATCTTAAATGATTTAAACAGCGGGCCATGGGTTCACTATTGGCTANAGGTGTTCAGATCATTTAATTCTTACATGGCATTTCTTTTGGGTCCTGCATCTATAATCCTGGTTGTCTTTCTGAATTGAGATAATACAAAGCATGAGCCTATATGGCTCTTTCTGATCAAAAAAAAAAAAAA]
[+] EMBL AU181589 [GCCTCACCCTCCTCGCGCCGCCTCTCCCCGCCCCACCGATGCCCTGCAGCGCCGCTCCATCCTCCGACGCCTGTCCTGGCCCCGACACCGCCGTGCGTCGCCGCATGTCCTCCACTGCCTTTCTCTCTCTCTCTCCTTGCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAGGCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGGGTTAGGTCTTCGTCCTTCTCACTACCTCGTCGTCGATTTACCTGTCTACTCAATACAAGCTCCACGCTGCCTTCCGATCTGGTGGTAGCTGCCGTGCAGCGA TCGGATCTGGCGAAGGGAGGAGGAGCGCACGGCGGCGTCGACCTGAAGTAGGTTGCTGGCGGCGTCCCCAGCGTGGTGG ]
[+] EMBL OSR04241A [ AGCGCCGCTCCATCCTCCGACGCCTGTCCTGGCCCCGACACCGCCGTGCGTCGCCGCATGTCCTCCACTGCC TCTCTCTCTCTCTCCTTTCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAGGCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGGGTTAGGTCTTCGTCGTTCTCACTACCTCGTCGTCGATTTACCTGTCTCCTCAATACAAGCCCCACGCTGCCTTCCGATTTGGTGGCAGCTGCCGTGCAG GATTCGGATCTGGCGAAGGGAGGAGGAGCGCACGGCGGTGTCGACTTGAAGTAGGTTGCTGGCGG ]
[+] EMBL AU101606 [ GACTTAAAGTAGGTTGCTGCCGGCGTCCCCAGCGTGGTGGTGTAGGCCNATGGGCCCAGAGGCGAACGCCTCGAGCTTGCGAGAAGATGGCGTCGGCACGGAGTTCTCGAAGGCGAGGAGTCGGTCTGNCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCTCCATGAGCAGTGGCAAGCTCCTGTTTTTTCTGGTCATCAGAGGGAGGAGGAGTTGTCTCCATCGCCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATCGCATCACGCCATCGTCCACTGGTAACCTCTCATTTATTGCACGTTTGGATGCAACATTTAGGTGGCAAGGAGATTATACATTGGCGATAGCATGGAGCAACAGGCAGAAATGCCATTCT TTGTTCATTTTATTTTTCCTTTTTTTTAGTTTGATTAGATTATGGTGCTTAAGGAGCTGGATTTGCTGTTAAATCTTAAATGATTTAAACAGCGGGCCATGGGTTCACTATTGGCTANAGGTGTTCAGATCATTTAATTCTTACATGGCATTTCTTTTGGGTCCTGCATCTATAATCCTGGTTGTCTTTCTGAATTGAGATAATACAAAGCATGAGCCTATATGGCTCTTTCTGATCAAAAAAAAAAAAAA]
[+] EMBL AA751691 [ cGATCAACAGGCAGAAATGCCATTCTCCTGTTCATTTAATTTTTCCTTTTTTTTAGTTTGATTAGATTATGGTGCTTAAGGAGCTGGATTTGCTGTTAAATCTTAAATGATTTAAACAGCGGGCCATGGGTTCACTATTGGCTANAGGTGTTCAAATCATTTAATTCTTAaaaaaaaaa ]
consensusID : consensus_12105#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 944 fasta sequence
[CGTGACGGTGCGTCGCTTCCCCCTCCTCGCGCCGCCTCTCCCCGCCACACCGACACCCTGCGCAGTTGCGCCGCCGCTCCATCCTCCAGCACCTAACCTCGCCCCGACACCGCCACATGCCTCGCCGCATGTCCTCCACTTCCTCTCTCTTCTTGCTGCCGATGCCGCTGGGCTCGAGCTAGCGAGTAGGTCGATCTGGCTTTCAATCAGGTTAGGTCTCCGTCCTTAGCACCACCTCGTCGGCGATTTACCTTCGCCACAATCCAAGCCCCACGCTGCCTTCAGATCTGGTGGCATCTACCTTGCAGCGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGCGGAGCGGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGT-GGTGGTTCACTGGTTCAGGTGGACAATGCCTCGAGCTTGCTAGAAATGGCGTTGGCATGGAGTTCTCCAAGGTGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCTCCATAAGCAGTGGCAAAGCTCCTATTTTTTTTTGGCCACCAGATGGAGGAGGGAGTTGTTTCCCATCG-CTAGCCGTTCTNTGGATGCAGCAAGCCATCTCCCATTAGTATCTGATTTTTGCCGTTCTCTGGATGCAGCAAGCCATCTTCCATTGGTATCTGATTTTCGTTTGTATTCCCCACAAAAATTTGAGGTGTTTGTTTTGTGTGGTGTCCTGCCTACAAGGTGTTCGTTGTTTTCCCTACAAGCATGGGAATGTGGCAATCTTACATGACCTGTTAGTGTGTAAGCCTGAATGGTTTGTTGGGCTTTAGATTTGGATCCTAGCTTCCACTTAATTTGCCCTAAACATTTGAACCTACCTTAATGTTAGCAGTTAAAATATCTAATGAAATGCATCATTGAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF329396 [CGTGACGGTGCGTCGCTTCCCCCTCCTCGCGCCGCCTCTCCCCGCCACACCGACACCCTGCGCAGTTGCGCCGCCGCTCCATCCTCCAGCACCTAACCTCGCCCCGACACCGCCACATGCCTCGCCGCATGTCCTCCACTTCCTCTCTCTTCTTGCTGCCGATGCCGCTGGGCTCGAGCTAGCGAGTAGGTCGATCTGGCTTTCAATCAGGTTAGGTCTCCGTCCTTAGCACCACCTCGTCGGCGATTTACCTTCGCCACAATCCAAGCCCCACGCTGCCTTCAGATCTGGTGGCATCTACCTTGCAGCGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGCGGAGCGGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGTGGGTGGTTCACTGGTTCAGGTGGACAATGCCTCGAGCTTGCTAGAAATGGCGTTGGCATGGAGTTCTCCAAGGTGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCTCCATAAGCAGTGGCAAAGCT ]
[+] EMBL OSC622 [ TCCGTCCTTAGCACCACCTCGTCGGCGATTTACCTTCGCCACAATCCAAGCCCCACGCTGCCTTCANATCTGGTGGCATCTACCTTGCAGCGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGCGGAG GGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGT GGTGGTTCACTGGTTCAGGTGGACAATGCCTCGAGCTTGCTAGAAATGGCGTTGGCATGGAGTTCTCCAAGGTGAGGTGGCGAGGTATATGTNTGGCGGTGCATGGCTTGATTTTCGAGTNATGTGGGTNCTCCATAAGCAGTGGCAAAGCTCCTATTTTTTTTTGGCCACCAGATGGAGGAGGGAGTTGTTTCCCATCG CTAGCCGTTCTNTGGATG ]
[+] EMBL AU094430 [ ACGTCCCCGGTGTGGT GGTGGTTCACTGGTTCAGGTGGACAATGCCTCGAGCTTGCTAGAAATGGCGTTGGCATGGAGTTCNCCAAGGTGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCTCCATAAGCAGTGGCAAAGCTCCTATTTTTTTCTGGCCACCAGATGGAGGA GGAGTTGTCTCCCATCGCCTAGCCGTTCTCTGGATGCAGCAAGCCATCTCCCATTAGTATCTGATTTTTGCCGTTCTCTGGATGCAGCAAGCCATCTTCCATTGGTATCTGATTTTCGTTTGTATTCCCCACAAAAATTTGAGGTGTTTGTTTTGTGTGGTGTCCTGCCTACAAGGTGTTCGTTGTTTTCCCTACAAGCATGGGAATGTGGCAATCTTACATGACCTGTTAGTGTGTAAGCCTGAATGGTTTGTTGGGCTTTAGATTTGGATCCTAGCTTCCACTTAATTTGCCCTAAACATTTGAACCTACCTTAATGTTAGCAGTTAAAATATCTAATGAAATGCATCATTGAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12105#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 880 fasta sequence
[CTCCTCGCGCCGCCTCTCCCCGCCCCACCAATGCCCTGCAGCGCCGCTCCATCCTCCGACGCCTGTCCTGGCCCCGACACCGCCGTGCGTCGCCGCATGTCCTCCACTGCCTCTCTCTCTCTCTCCTTTCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAGGCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGGCGATCGGATCTGGCGAAGGGAGGAGGAGCGCACGGCGGTGTCGACTTGAAGTAGGTTGCTGGCGGCGTCCCCAGCGTGGTGGTGTAGGCCGATGGGCCCAGGAGGCGAACGCCTCGAGCTTGCGAGAAGATGGCGTCGGCACGGAGTTCTCGAAGGCGAGGAGTCGGTCTGGCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCTCCATGAGCAGTGGCAAGCTCCTGTTTTTTCTGGTCATCAGAGGGAGGAGGAGTTGTCTCCATCGCCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATCGCATCACGCCATCGTCCACTGGTATTTGATTTTCATTTCTATTCCCCACCAAGATTTGAGGTGTTGTTTTGTGTGATGCCCTGCCTACAAGGTGTTCGTTGTTTTTCCTACAAGCATGGTGATGTGGCGATCTTAAAGCTATCAGTTACGCCTGCATGACCTGTAATGTAACCTCTCATTTATTGCACGTTTGGATGCAACATTTAGGTGGCAAGGAGATTATACATTGGCGATAGCATGGAGCAACAGGCAGAAATGCCATTCTTTGTTCATTTTATTTTTCCTTTTTTTTAGTTTGATTAGATTATGGTGCTTAAGGAGCTGGATTTGCTGTTAAATCTTAAATGATTTAA]
[+] EMBL AK070206 [CTCCTCGCGCCGCCTCTCCCCGCCCCACCAATGCCCTGCAGCGCCGCTCCATCCTCCGACGCCTGTCCTGGCCCCGACACCGCCGTGCGTCGCCGCATGTCCTCCACTGCCTCTCTCTCTCTCTCCTTTCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAGGCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGGCGATCGGATCTGGCGAAGGGAGGAGGAGCGCACGGCGGTGTCGACTTGAAGTAGGTTGCTGGCGGCGTCCCCAGCGTGGTGGTGTAGGCCGATGGGCCCAGGAGGCGAACGCCTCGAGCTTGCGAGAAGATGGCGTCGGCACGGAGTTCTCGAAGGCGAGGAGTCGGTCTGGCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCTCCATGAGCAGTGGCAAGCTCCTGTTTTTTCTGGTCATCAGAGGGAGGAGGAGTTGTCTCCATCGCCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATCGCATCACGCCATCGTCCACTGGTATTTGATTTTCATTTCTATTCCCCACCAAGATTTGAGGTGTTGTTTTGTGTGATGCCCTGCCTACAAGGTGTTCGTTGTTTTTCCTACAAGCATGGTGATGTGGCGATCTTAAAGCTATCAGTTACGCCTGCATGACCTGTAATGTAACCTCTCATTTATTGCACGTTTGGATGCAACATTTAGGTGGCAAGGAGATTATACATTGGCGATAGCATGGAGCAACAGGCAGAAATGCCATTCTTTGTTCATTTTATTTTTCCTTTTTTTTAGTTTGATTAGATTATGGTGCTTAAGGAGCTGGATTTGCTGTTAAATCTTAAATGATTTAA]
consensusID : consensus_12105#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[GTCGGCACGGAGTTCTCGAAGGCGAGGAGTCGGTTTCGCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCTCCATGAGCAGTGGCAAGCTCCTGTTTTTTTCTGGTCATCAGAGGGAGGAGGAGTTGTCTCCATCGTCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATCGCATCACGCCATCGTCCACTTGTATTTGATTTTCATTTCTATTCCCCACCAAGATTTGAGGTGTTTGTTTTGTGTGATGCCCTGCCTACAAGGTGTTCGTTGTTTTTCCTACAAGCATGGTGATGTGGCGATCTTAAAGCTATCAGTTACGCCTGCATGACCTGTAATGTAAGCCCGAATGATTTGTTAGGATCTAGATTTGGATCCTACTTTCCACTTAATTTCTCTAAACATTTGAAACTAAAAAAAAAAAAAAAAA]
[+] EMBL CB000547 [GTCGGCACGGAGTTCTCGAAGGCGAGGAGTCGGTTTCGCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCTCCATGAGCAGTGGCAAGCTCCTGTTTTTTTCTGGTCATCAGAGGGAGGAGGAGTTGTCTCCATCGTCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATCGCATCACGCCATCGTCCACTTGTATTTGATTTTCATTTCTATTCCCCACCAAGATTTGAGGTGTTTGTTTTGTGTGATGCCCTGCCTACAAGGTGTTCGTTGTTTTTCCTACAAGCATGGTGATGTGGCGATCTTAAAGCTATCAGTTACGCCTGCATGACCTGTAATGTAAGCCCGAATGATTTGTTAGGATCTAGATTTGGATCCTACTTTCCACTTAATTTCTCTAAACATTTGAAACTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12105#0 AAAAAAAAACGGAAACCCTAGCCGCCACCACTCCCGTGACGGTGCGTCGCTTCCCCCTCC 60
consensus_12105#2 ----------------------------------CGTGACGGTGCGTCGCTTCCCCCTCC 26
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------GCCTCACCCTCC 12
consensus_12105#3 --------------------------------------------------------CTCC 4
consensus_12105#0 TCGCGCCGCCTCTCCCCGCCACACCGACACCCTGCGCAGTTGCGCCGCCGCTCCATCCTC 120
consensus_12105#2 TCGCGCCGCCTCTCCCCGCCACACCGACACCCTGCGCAGTTGCGCCGCCGCTCCATCCTC 86
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 TCGCGCCGCCTCTCCCCGCCCCACCGATGCCCTG--------CAGCGCCGCTCCATCCTC 64
consensus_12105#3 TCGCGCCGCCTCTCCCCGCCCCACCAATGCCCTG--------CAGCGCCGCTCCATCCTC 56
consensus_12105#0 CAGCACCTAACCTCGCCCCGACACCGCCACATGCTTCGCCGCATGTCCTCCACTTCC--- 177
consensus_12105#2 CAGCACCTAACCTCGCCCCGACACCGCCACATGCCTCGCCGCATGTCCTCCACTTCC--- 143
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 CGACGCCTGTCCTGGCCCCGACACCGCC--GTGCGTCGCCGCATGTCCTCCACTGCCTTT 122
consensus_12105#3 CGACGCCTGTCCTGGCCCCGACACCGCC--GTGCGTCGCCGCATGTCCTCCACTGCC--T 112
consensus_12105#0 -----TCTCTCTTCTTGCTGCCGATGCCGCTGGGCTCGAGCT------------------ 214
consensus_12105#2 -----TCTCTCTTCTTGCTGCCGATGCCGCTGGGCTCGAGCT------------------ 180
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 CTCTCTCTCTCTCCTTGCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAG 182
consensus_12105#3 CTCTCTCTCTCTCCTTTCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAG 172
consensus_12105#0 ---------------AGCGAGTAGGTCGATCTGGCTTTCAATCAG--------------- 244
consensus_12105#2 ---------------AGCGAGTAGGTCGATCTGGCTTTCAATCAGGTTAGGTCTCCGTCC 225
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 GCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGGGTTAGGTCTTCGTCC 242
consensus_12105#3 GCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGG--------------- 217
consensus_12105#0 ------------------------------------------------------------
consensus_12105#2 TTAGCACCACCTCGTCGGCGATTTACCT-TCGCCACAATCCAAGCCCCACGCTGCCTTCA 284
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 TTCTCACTACCTCGTCGTCGATTTACCTGTCTACTCAATACAAGCTCCACGCTGCCTTCC 302
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 ------------------------CGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGC 280
consensus_12105#2 GATCTGGTGGCATCTACCTTGCAGCGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGC 344
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 GATCTGGTGGTAGCTGCCGTGCAGCGATCGGATCTGGCGAAGGGAGGAGGAGCGCACGGC 362
consensus_12105#3 ------------------------CGATCGGATCTGGCGAAGGGAGGAGGAGCGCACGGC 253
consensus_12105#0 GGAGCGGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGTGGTG---GTTCACTGG 337
consensus_12105#2 GGAGCGGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGTGGTG---GTTCACTGG 401
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 GGCGTCGACTTGAAGTAGGTTGCTGGCGGCGTCCCCAGCGTGGTGGTGTAGGCCNATGGG 422
consensus_12105#3 GGTGTCGACTTGAAGTAGGTTGCTGGCGGCGTCCCCAGCGTGGTGGTGTAGGCCGATGGG 313
consensus_12105#0 TTCAGGTGGACAATGCCTCGAGCTTGCTAGAA-ATGGCGTTGGCATGGAGTTCTCCAAGG 396
consensus_12105#2 TTCAGGTGGACAATGCCTCGAGCTTGCTAGAA-ATGGCGTTGGCATGGAGTTCTCCAAGG 460
consensus_12105#4 --------------------------------------GTCGGCACGGAGTTCTCGAAGG 22
consensus_12105#1 CCCAG-AGGCGAACGCCTCGAGCTTGCGAGAAGATGGCGTCGGCACGGAGTTCTCGAAGG 481
consensus_12105#3 CCCAGGAGGCGAACGCCTCGAGCTTGCGAGAAGATGGCGTCGGCACGGAGTTCTCGAAGG 373
** **** ********* ****
consensus_12105#0 TGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCT 456
consensus_12105#2 TGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCT 520
consensus_12105#4 CGAGGAGTCG--------GTTTCGCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCT 74
consensus_12105#1 CGAGGAGTCG--------GTCTGNCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCT 533
consensus_12105#3 CGAGGAGTCG--------GTCTGGCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCT 425
**** * ** ** * *** ***** ********************** ***
consensus_12105#0 CCATAAGCAGTGGCAAAGCTCCTATTTTTTTCTGGCCACCAGATGGAGGAGG-AGTTGTC 515
consensus_12105#2 CCATAAGCAGTGGCAAAGCTCCTATTTTTTTTTGGCCACCAGATGGAGGAGGGAGTTGTT 580
consensus_12105#4 CCATGAGCAGTGGCAA-GCTCCTGTTTTTTTCTGGTCATCAGAGGGAGGAGG-AGTTGTC 132
consensus_12105#1 CCATGAGCAGTGGCAA-GCTCCTGTTTTTT-CTGGTCATCAGAGGGAGGAGG-AGTTGTC 590
consensus_12105#3 CCATGAGCAGTGGCAA-GCTCCTGTTTTTT-CTGGTCATCAGAGGGAGGAGG-AGTTGTC 482
**** *********** ****** ****** *** ** **** ******** ******
consensus_12105#0 TCCCATCGCCTAGCCGTTCTCTGGATGCAGCAAGCCATCTCCCATTAGTATCTGATTTTT 575
consensus_12105#2 TCCCATCGC-TAGCCGTTCTNTGGATGCAGCAAGCCATCTCCCATTAGTATCTGATTTTT 639
consensus_12105#4 TCC-ATCGTCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATC-------------- 177
consensus_12105#1 TCC-ATCGCCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATC-------------- 635
consensus_12105#3 TCC-ATCGCCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATC-------------- 527
*** **** ********** ******** ***** * * ***
consensus_12105#0 GCCGTTCTCTGGATGCAGCAAGCCATCTTCCATTGGTATCTGATTTTCGTTTGTATTCCC 635
consensus_12105#2 GCCGTTCTCTGGATGCAGCAAGCCATCTTCCATTGGTATCTGATTTTCGTTTGTATTCCC 699
consensus_12105#4 --------------GCATCACGCCATCGTCCACTTGTATTTGATTTTCATTTCTATTCCC 223
consensus_12105#1 --------------GCATCACGCCATCGTCCACTGGTAACC---TCTCATTT--ATTGCA 676
consensus_12105#3 --------------GCATCACGCCATCGTCCACTGGTATTTGATTTTCATTTCTATTCCC 573
*** ** ****** **** * *** * ** *** *** *
consensus_12105#0 CACAAAAATTTGAGGTGTTTGTTTTGTGTGGTGTCCTGCCTACAAGGT-GTTCGTTGTTT 694
consensus_12105#2 CACAAAAATTTGAGGTGTTTGTTTTGTGTGGTGTCCTGCCTACAAGGT-GTTCGTTGTTT 758
consensus_12105#4 CACCAAGATTTGAGGTGTTTGTTTTGTGTGATGCCCTGCCTACAAGGT-GTTCGTTGTTT 282
consensus_12105#1 CGTTTGGATGCAACATTTAGGTGGCAAG-GAGATTATACATTGGCGATAGCATGGAGCAA 735
consensus_12105#3 CACCAAGATTTGAGGTGTTGTTTTGTGT-GATGCCCTGCCTACAAGGT-GTTCGTTGTTT 631
* ** * * * * * * * * * * * * *
consensus_12105#0 TCCCTACAAGCATGGGAATGTGGCAATCTTACA-TGACCTGTTA-------GTG------ 740
consensus_12105#2 TCCCTACAAGCATGGGAATGTGGCAATCTTACA-TGACCTGTTA-------GTG------ 804
consensus_12105#4 TTCCTACAAGCATGGTGATGTGGCGATCTTAAAGCTATCAGTTACGCCTGCATGACCTGT 342
consensus_12105#1 CAGGCAGAAATGCCATTCTTTGTTCATTTTATTTTTCCTTTTTT---------------- 779
consensus_12105#3 TTCCTACAAGCATGGTGATGTGGCGATCTTAAAGCTA--TCAGT---------------- 673
* ** * ** ** ***
consensus_12105#0 --TGTAAGCCTGAATGGTTTGTTGGGCTTT-AGATTTGGATCCTAGCTTCCACTTAATTT 797
consensus_12105#2 --TGTAAGCCTGAATGGTTTGTTGGGCTTT-AGATTTGGATCCTAGCTTCCACTTAATTT 861
consensus_12105#4 AATGTAAGCCCGAATGATTTGTTAGGATCT-AGATTTGGATCCTACTTTCCACTTAATTT 401
consensus_12105#1 ----TTAGTTTGATTAGATTATGGTGCTTAAGGAGCTGGATTTGCTGTTAAATCTTAAAT 835
consensus_12105#3 ----TACGCCTGCATGACCTGTAATGT----AACCTCTCATTTATTGC--ACGTTTGGAT 723
* * * * * * * ** * *
consensus_12105#0 GCCCTAAACATTTGAACCTACCTTAATGTTAGCAGTTAAAAT--ATCTAATGAAATGCAT 855
consensus_12105#2 GCCCTAAACATTTGAACCTACCTTAATGTTAGCAGTTAAAAT--ATCTAATGAAATGCAT 919
consensus_12105#4 -CTCTAAACATTTGAAACTA----AAAAAAAAAAAAAAAA-------------------- 436
consensus_12105#1 GATTTAAACAGCGGGCCATGGGTTCAC--TATTGGCTANAGGTGTTCAGATCATTTAATT 893
consensus_12105#3 GCAACATTTAGGTGGCAAGGAGATTATA-CATTGGCGATAG---CATGGAGCAAC--AGG 777
* * * * * * *
consensus_12105#0 CATTGAAAATATTCATTTGTAGTTAGCTCTGTAGATGCATGCATTTCATATAGATAATGA 915
consensus_12105#2 CATTGAAAAAAAAAAAAAAAAAAAA----------------------------------- 944
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 CTTACATGGCATTTCTTTTGGGTCCTGCATCTATAATCCTGGTTGTCTTTCTGAATTGAG 953
consensus_12105#3 CAGAAATGCCATTCTTTGTTCATTTTAT-TTTTCCTTTTTTTTAGTTTGATTAGATTATG 836
consensus_12105#0 TTGCTGATAACTGCTTCTTTTGCTAGAATATTTATGTGACTACCTAAATAGCTAACAAAC 975
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ATAATACAAAGCATGAGCCTATATGGCTCTTTCTGATCAAAAAAAAAAAAAA-------- 1005
consensus_12105#3 GTGCTTAAGGAGCTGGATTTGC-TGTTAAATCTTAAATGATTTAA--------------- 880
consensus_12105#0 TTCTCCAATTATAATCAGTCATTGCTTGTCCCTGTGATTCATAAATCTGTATGGTTCTTG 1035
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 TGATTCCTGATTGAGTTTTCAAGGAAAATACTAACATTAGGTGGGGAATACTGTGCAAAT 1095
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 GATTCTGTCACAGCTGAAAGACACTCTAAAAAACCTCTCATGTATTTCACATTTGAATGC 1155
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 ACCATTCAGGTGGGAAGGAGATTACACATTTGTTCATTTTATTTTCCTTTTTTTAGTTAG 1215
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 TTTGATTAGATTAAGGTGCTTAACGAGCTGGATTTGCTGTTAAATTTTAAATGATTTAAA 1275
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 CAGCGGGCCATGGGTTCACTATTTGCTAGAGGTGTTCGCATCGTTTAATTCTTACATGCA 1335
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 TTCCTTGGGGTCCTACATCTACAATCCTGGTTGCCTTTCTAATTTGAGATAATACAAAGC 1395
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 ATGTACAGCCTATATGGCTCTATCGGTTTTCTGATCACAAAATTTGTCTGTATACATCTA 1455
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 TTAGTTTTCTGATCACAAAATTTTTGTTACAACATTGAAAATGCTGGTCTATCTATGATT 1515
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 AGAAACTTTGCTGGTTATTTCTGTGTATAACTGCAATATGATGTTATCTATATTTGCGAT 1575
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 ACAATTCTGCAAATTGCTGATTACAGAAGTTGTCTTGCAAGAGTTGAAAAGGACATGTTT 1635
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 ATGTGCTTAGATGTTATTCTGGTTGCTTGATCTGGCATCCTGTCATAATTTGTTTCTAAC 1695
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 ACTATCAGAACAAAAGGATAGAATATATGTTGCCTAAATGCTGTAATTTTCATGGAAAGA 1755
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 AGCTTGATGATATTGCCACCTCATCCCACAACTATCATGTAAGCTATATTGGTTGTATAG 1815
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 AAAACCAAGCATTTGAGAATTTTTTTTATTGTCAAAGATTCAAAAGCCTTGCCAACCCTT 1875
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 GGTATTGTTTGTATTTTCTGTATTTGGTCTATTTGGTAGTTAAGAAATTCCCTACAAGTC 1935
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 TGATTTGATACTTTATAAATTCATTCTCTTGCAGTCCTGGAGCATTGTTCTGCTTGACGG 1995
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 GTGGACAGGGATAAGTGTGGCCTTTTGTTCTGTAGCTGAAAAAGTGGAAGCTATGTAAGG 2055
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 AATGTTAGCTAGCATATGATCAGAGTGATCTAAGGTTTCAGTCTGTTGGATAGGATTGCG 2115
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 TTGGCTTAATGTTTAAGCTTTTGGGTATAGGTGGAGATCTCTTAGTAGCTTTCTTTTAAG 2175
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 CTGGTAACCCCCAAGCCTTTTGTCTTCTGAAAACATCTCTATGAAAATATTTACAGTTTG 2235
consensus_12105#2 ------------------------------------------------------------
consensus_12105#4 ------------------------------------------------------------
consensus_12105#1 ------------------------------------------------------------
consensus_12105#3 ------------------------------------------------------------
consensus_12105#0 TAGTTCAGTAAAGCAATTGATCAACATGAGTATTATATTTTGATATGCGAA 2286
consensus_12105#2 ---------------------------------------------------
consensus_12105#4 ---------------------------------------------------
consensus_12105#1 ---------------------------------------------------
consensus_12105#3 ---------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||