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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2263 fasta sequence
[CAGAGCGCGCAATGTTCGGACGCGCCAGGTGCTCGACCTCGGCCCCCGCCGCCGGCGAGCGGCGCGCTCTTCCCGTCGACCCTCTCTCCCTCCCTCGCCTACTCGTCTCCGCCGCCACCACCCCCGGCGCCGCCGCCCCGGCCGTCTCCACCCTACACGCCGCCGCTCTCAAGCTGGGGGTCCTCCCCTCCTCGCTCCCGGCCTCCAACGCCCTCGTCTCCGCCTACTCCCTCTCCGGCCTCCTCCCCTGCGCGCTCCGCGCCTTCTCCCTCATCCCCCACCCTTCCACCGGATCCTACACCGCCATCCTCTCCGCGCTCTCCCGCCACGGCCGCCGCCGGGAGGCCCTCTCCCTCTTCTCCGCCGCCGCGGTCGCCCGCCCCGACGCCGAGCTCCTCTCCTGCGTCGTCTCCTGCTGCCGCCGCGCATCCGCCTCCCTCCCCGCTCGCGCCGCGCACGCCTACGGGGTAAAGACCGCGCCACTGCTGGCCTTCTACGCCTCGGCCGGCCCGGCGCTCGTCGCGCTGTATGCGATGTGTGGGAGGGTGAGCGCGGCCAAGAGGATCTTTGATCGTATGGACGGCGAGGACGTGGTGTCCTGGAACGCGATGATTGGGGGGTTCGCTGGTGCCGGGATGAATGGCGAGGCGTGGGATTGCTTCCGGGAGATGCGCGCAAGAGGTGTTCGAGGGAATGCCCGTACCGCGGTTGCTGTGCTGGGGGCTTGTGATTTGGAGTCTGGAAGACAGGTCCATGGGCACATGGTGAGAAACCATGGTGATAGTGGTTCAAACGCAATTCTGTGGAATGCGTTGATGAACATGTATTCACGTGTTGGATGTGTCGACAATGCAGAACATGTGTTCTTCGAGATTGAACGGAAGGATGTTGTGTCATGGAATGTGATGATAGGTGCTTTCGCAAAGAATGGGCATGGAGAGAGGGCACTTGAACTTGTGGATGCAATGTTGCGTTGTGGGATGCAGCCAGATTCAGTGACATTCACAACTCTGCTCATGGCATGCTGCCACTGTGGCTTGGTTGATGAAGGTCTTGCGCTTTTTGAGCGGTTTGTGGAAAATTCTGCCCTCATCCCTACTATGGAGCAGTGTGCTTGTATTGTGGATTTGCTTTCACGAGCTGGGAGGTTCAGAGAGGCTGCTGGATTTATTGATCAGATGCCAATCAGACCAAATGCAGTTGTATGGGGTGCTTTGTTATCTGGAAGTAGGATGCACCATGATGTGGATCATGCACAGATCGCTTTTGAGAAACTGGTTCAATTGGAGCCAGATAACCCTGGAAATTTTGTGACTATGTCAAATATATATGCAAAGGCCGGAATGGTTGAGGATGCAAAGAGAGTTAGGATGATGATTGACAGGGAGGAGTTAGTGAAGCCTTCTGGACAAAGTCGTGTTCAAGCTATGTAAGAAGTGACAGCAAGTAAATACCTGGCTGCTAGACTGTTAGGCCTAAGTAAGACCTACCCTTTTCTGTAAGCTTGATTTCTTGTTGCACCATCCTTCAAGTAATTGTATAGCTACAAAAGATGCACCACCTCTGTGGCCTCTGTTGTTTTTGTTCTTCACAATAATGTACCTTTTGTTCGTACTGGTATTTCTTCCTACGAAGATGGCAGAGACTATGACCAATAACCTACCTTCTGTTTTGTAACTGCACAGAATGGGTTATGAATGCCCAGCATTCTTTAGTTACTGTGATTTTTTTCTCTACGCTTCATTTTAAAAAGATAACAACGCAATCTTTCTATTTGCATCTCTTCTAACTGGGTAATAAACAAATTGCATGCTAATAAAACTTTCAATGTGCGCAGTTGCTTTTAGTCATCATGATTTGTCTACCGTGCTTCAGAGTGCAGCAACACTCATGCATCCACTACCAACAGTTCATTTGGTGTCTACCATTGGATATGGACAAGGTTTGTTCACTAAGAGGGGATTTAAGGGCTTGTTCAGCACCCAGGGTCCTCTGCCAAGTTTTGCAGTTCTCTCTGGCGTCCATTGTCTAGTTGTGTGCCTGTTGAGAAGGCTGCGTGGCAAAGATGACATTGTTAATGCTGGAATAGCTGGTTGTTGCACTAGCCTTGCTCTGAGCTTTCCAGATGCAGCTCATGTTGATTGGCTTTTGCTTGACGAGGTCTTACCAGGGAGAAGAAGTTAATTATGGCAACCCTGAATCTGCATAGCATTTTAATGTCTCACTGCAACACGTTGTCTGGATATTCGTAAAATAACATAGC]
[+] EMBL AK069314 [CAGAGCGCGCAATGTTCGGACGCGCCAGGTGCTCGACCTCGGCCCCCGCCGCCGGCGAGCGGCGCGCTCTTCCCGTCGACCCTCTCTCCCTCCCTCGCCTACTCGTCTCCGCCGCCACCACCCCCGGCGCCGCCGCCCCGGCCGTCTCCACCCTACACGCCGCCGCTCTCAAGCTGGGGGTCCTCCCCTCCTCGCTCCCGGCCTCCAACGCCCTCGTCTCCGCCTACTCCCTCTCCGGCCTCCTCCCCTGCGCGCTCCGCGCCTTCTCCCTCATCCCCCACCCTTCCACCGGATCCTACACCGCCATCCTCTCCGCGCTCTCCCGCCACGGCCGCCGCCGGGAGGCCCTCTCCCTCTTCTCCGCCGCCGCGGTCGCCCGCCCCGACGCCGAGCTCCTCTCCTGCGTCGTCTCCTGCTGCCGCCGCGCATCCGCCTCCCTCCCCGCTCGCGCCGCGCACGCCTACGGGGTAAAGACCGCGCCACTGCTGGCCTTCTACGCCTCGGCCGGCCCGGCGCTCGTCGCGCTGTATGCGATGTGTGGGAGGGTGAGCGCGGCCAAGAGGATCTTTGATCGTATGGACGGCGAGGACGTGGTGTCCTGGAACGCGATGATTGGGGGGTTCGCTGGTGCCGGGATGAATGGCGAGGCGTGGGATTGCTTCCGGGAGATGCGCGCAAGAGGTGTTCGAGGGAATGCCCGTACCGCGGTTGCTGTGCTGGGGGCTTGTGATTTGGAGTCTGGAAGACAGGTCCATGGGCACATGGTGAGAAACCATGGTGATAGTGGTTCAAACGCAATTCTGTGGAATGCGTTGATGAACATGTATTCACGTGTTGGATGTGTCGACAATGCAGAACATGTGTTCTTCGAGATTGAACGGAAGGATGTTGTGTCATGGAATGTGATGATAGGTGCTTTCGCAAAGAATGGGCATGGAGAGAGGGCACTTGAACTTGTGGATGCAATGTTGCGTTGTGGGATGCAGCCAGATTCAGTGACATTCACAACTCTGCTCATGGCATGCTGCCACTGTGGCTTGGTTGATGAAGGTCTTGCGCTTTTTGAGCGGTTTGTGGAAAATTCTGCCCTCATCCCTACTATGGAGCAGTGTGCTTGTATTGTGGATTTGCTTTCACGAGCTGGGAGGTTCAGAGAGGCTGCTGGATTTATTGATCAGATGCCAATCAGACCAAATGCAGTTGTATGGGGTGCTTTGTTATCTGGAAGTAGGATGCACCATGATGTGGATCATGCACAGATCGCTTTTGAGAAACTGGTTCAATTGGAGCCAGATAACCCTGGAAATTTTGTGACTATGTCAAATATATATGCAAAGGCCGGAATGGTTGAGGATGCAAAGAGAGTTAGGATGATGATTGACAGGGAGGAGTTAGTGAAGCCTTCTGGACAAAGTCGTGTTCAAGCTATGTAAGAAGTGACAGCAAGTAAATACCTGGCTGCTAGACTGTTAGGCCTAAGTAAGACCTACCCTTTTCTGTAAGCTTGATTTCTTGTTGCACCATCCTTCAAGTAATTGTATAGCTACAAAAGATGCACCACCTCTGTGGCCTCTGTTGTTTTTGTTCTTCACAATAATGTACCTTTTGTTCGTACTGGTATTTCTTCCTACGAAGATGGCAGAGACTATGACCAATAACCTACCTTCTGTTTTGTAACTGCACAGAATGGGTTATGAATGCCCAGCATTCTTTAGTTACTGTGATTTTTTTCTCTACGCTTCATTTTAAAAAGATAACAACGCAATCTTTCTATTTGCATCTCTTCTAACTGGGTAATAAACAAATTGCATGCTAATAAAACTTTCAATGTGCGCAGTTGCTTTTAGTCATCATGATTTGTCTACCGTGCTTCAGAGTGCAGCAACACTCATGCATCCACTACCAACAGTTCATTTGGTGTCTACCATTGGATATGGACAAGGTTTGTTCACTAAGAGGGGATTTAAGGGCTTGTTCAGCACCCAGGGTCCTCTGCCAAGTTTTGCAGTTCTCTCTGGCGTCCATTGTCTAGTTGTGTGCCTGTTGAGAAGGCTGCGTGGCAAAGATGACATTGTTAATGCTGGAATAGCTGGTTGTTGCACTAGCCTTGCTCTGAGCTTTCCAGATGCAGCTCATGTTGATTGGCTTTTGCTTGACGAGGTCTTACCAGGGAGAAGAAGTTAATTATGGCAACCCTGAATCTGCATAGCATTTTAATGTCTCACTGCAACACGTTGTCTGGATATTCGTAAAATAACATAGC]
consensusID : consensus_12110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1486 fasta sequence
[GTAATCTACGGGATTTACAGAGCGCGCAATGTTCGGACGCGCCAGGTGCTCGACCTCGGCCCCCGCCGCCGGCGAGCGGCGCGCTCTCCCCGTCGACCCTCTCTCCCTCCCTCGCCTACTCGTCTCCGCCGCGACCACCCCCGGCGCCGCCGCCCCGGCCGTCTCCACCCTACACGCCGCCGCCCTCAAGCTGGGGGTCCTCCCTCCTCGCTCCCGGCCTCCAACGCCCTCGTCTCCGCCTACTCCCTCTCCGGCCTCCTCTTGGGCCGTCACCAAGATTAGATCCGGGGGATCGGATCTCTCGGCGGCGGTGGCGGCGGCGGCGGCGAGAATGAACAGCCCCCGGCGATTTGTGAATCTGGTGCTCGACGGCATCGCCCGGCGGCAGCCGTCCTACGGCCTGCACCGCGTCGACGTCTCGACGCTGTTCCGTCCGCTCGCCGCCGATGAGGATGAAGAAGGGCGGCGCGGCGGCGCTATGGAAGTCGAGGACGCTCAGCTGCCTCGCGCCGCCATGATCTTCCACCCTTGCCCATCATACGGGCTTCCGAGTTGGCCCTCCTCCGTGGATTTCATGCCTCTCGGCAGCGGCAGCGGCAGCGGCAGAGGCGGCGAAAAGAACGACGTGGTCGCCGTCGACTACAGCGGCAGCGGGGTGCTGTACGGCGCCGCCTCGCGCGCCGTCACCATCCTTCCCCCGATGAACACACCCAAGGCCTTCCCGGCTGTCGCTCACCATCGGAGGCAACATCTACGTCATGGAAAGGTACCCGGCCTCCTCCCAATCCCCCTCCTCTTGCTTCGAGGCTTCTCGTCCACGATCGCCACCCAAACCACCCCTTCGCCACGCCGCACTGGCACTGGCGCCTCCTCCCTTCGCCGCCCTTCGCCTTCACCGCCGATGATGCCCTTGATAGCATCCGCAACTTTTTCCAAGATGATGATGACTTCCTCACCGCCTACACGGCCGTCGGCGGCTCATGCATCTGGATGACAGTGCAGAGCACCGTCGCCGCCGCCGCGGGGACTTACTCCTTTGACACGTCCACCGCCACATGGACCAAGCTCGGCGACTGGTTGCTTCCGTTCAGAGGCCGCGCCGAGTATGCGCCCGAGCACAAGCTCTGGTTCGCGCTCTCCTCCGACGGCAACGAGCTGTGCGCGTCCGACCTCGCCGCCGCGGCGCAATGTGTGGAAGGTGAGCCCCGTGTCGCCCAGCGGCTCACCGGTGACGCCGCACCTCGTCCCTCTCGGCGCCGGCAGGTTCTGCATTGTCAGATTCATGTACAAAGGGTGGAGGTCCAACTTTGATTTCGACGAGAAATTCGCGGTGTTCACCGGCGTCGAGGTTCGGCGTGGTTGTAATAAGAACAGCAGCACAACGCTCCAGATGGTTAATCATAGGTCCAGACGGTACAGCCTTCTCGATAGGGTATGTGACTCTCGTGTGTTTTAAATAGAAATTTATGAATAAAAACACTTCTCA]
[+] EMBL AK121937 [GTAATCTACGGGATTTACAGAGCGCGCAATGTTCGGACGCGCCAGGTGCTCGACCTCGGCCCCCGCCGCCGGCGAGCGGCGCGCTCTCCCCGTCGACCCTCTCTCCCTCCCTCGCCTACTCGTCTCCGCCGCGACCACCCCCGGCGCCGCCGCCCCGGCCGTCTCCACCCTACACGCCGCCGCCCTCAAGCTGGGGGTCCTCCCTCCTCGCTCCCGGCCTCCAACGCCCTCGTCTCCGCCTACTCCCTCTCCGGCCTCCTCTTGGGCCGTCACCAAGATTAGATCCGGGGGATCGGATCTCTCGGCGGCGGTGGCGGCGGCGGCGGCGAGAATGAACAGCCCCCGGCGATTTGTGAATCTGGTGCTCGACGGCATCGCCCGGCGGCAGCCGTCCTACGGCCTGCACCGCGTCGACGTCTCGACGCTGTTCCGTCCGCTCGCCGCCGATGAGGATGAAGAAGGGCGGCGCGGCGGCGCTATGGAAGTCGAGGACGCTCAGCTGCCTCGCGCCGCCATGATCTTCCACCCTTGCCCATCATACGGGCTTCCGAGTTGGCCCTCCTCCGTGGATTTCATGCCTCTCGGCAGCGGCAGCGGCAGCGGCAGAGGCGGCGAAAAGAACGACGTGGTCGCCGTCGACTACAGCGGCAGCGGGGTGCTGTACGGCGCCGCCTCGCGCGCCGTCACCATCCTTCCCCCGATGAACACACCCAAGGCCTTCCCGGCTGTCGCTCACCATCGGAGGCAACATCTACGTCATGGAAAGGTACCCGGCCTCCTCCCAATCCCCCTCCTCTTGCTTCGAGGCTTCTCGTCCACGATCGCCACCCAAACCACCCCTTCGCCACGCCGCACTGGCACTGGCGCCTCCTCCCTTCGCCGCCCTTCGCCTTCACCGCCGATGATGCCCTTGATAGCATCCGCAACTTTTTCCAAGATGATGATGACTTCCTCACCGCCTACACGGCCGTCGGCGGCTCATGCATCTGGATGACAGTGCAGAGCACCGTCGCCGCCGCCGCGGGGACTTACTCCTTTGACACGTCCACCGCCACATGGACCAAGCTCGGCGACTGGTTGCTTCCGTTCAGAGGCCGCGCCGAGTATGCGCCCGAGCACAAGCTCTGGTTCGCGCTCTCCTCCGACGGCAACGAGCTGTGCGCGTCCGACCTCGCCGCCGCGGCGCAATGTGTGGAAGGTGAGCCCCGTGTCGCCCAGCGGCTCACCGGTGACGCCGCACCTCGTCCCTCTCGGCGCCGGCAGGTTCTGCATTGTCAGATTCATGTACAAAGGGTGGAGGTCCAACTTTGATTTCGACGAGAAATTCGCGGTGTTCACCGGCGTCGAGGTTCGGCGTGGTTGTAATAAGAACAGCAGCACAACGCTCCAGATGGTTAATCATAGGTCCAGACGGTACAGCCTTCTCGATAGGGTATGTGACTCTCGTGTGTTTTAAATAGAAATTTATGAATAAAAACACTTCTCA]
consensusID : consensus_12110#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 613 fasta sequence
[CGGCTTGTTGAGAA-GCTGCGCGGCAAAGATG-ACATTGTTAATGCTGGGATAGCTGGTTGTT-GCACTGGCCTTGCTTTGAGCTTTCCAGGAACACCACAAGCCTTGCTCCAAAGCTGTGCAACCTTTG-CAGCATTCTCATGCATCATGGAGGGGCTCAACAAACAGCAGGCTGCAATGGCACAGACACTTGGTGGGAGTGCTTTGACCGTTTCACACCAGAATGGTGGCGTTCTCCCACCATTCACTCTGCCACCACTTCTTGATGCATCAGATGCTTTATCTTCATGCTGCCAGCCCTTAGTACTAAAGCCGAAGCACTAGACTCTTCAGCATAGGGAGAAGGAGATGCTCAAGAAAGCTATAGCTTAGT-GAATTTT-GTTTTGGGACAT-GTCTCATAT-CTAGATTTG-CTTTCTGTATGACGCCAGGTTTTTCTTGCTGCACTGT-GGCAAGCGCTGGCTTAACTAGATTTCATTGGTTTGGCAGATAAAATTTAAGAAAAAAAAAAAACTGTGGCACCTGTTCTGTAATCTTTCCATCTTGCTATCCATATCTGGGATGCTGAACGTTATCAGTTATCACCTGGAAGCATGGTATTCTTCATATTTATCAAAAA]
[+] EMBL AU055703 [CGGCTTGTTGAGAA GNTGCGCGGCAAAGATG ACATTGTTAATGCTGGGATAGCTGGTTGTT GCACTGGCCTTGCTTTGAGCTTTCCAGGAACACCACAAGCCTTGCTCCAAAGCTGTGCAACCTTTGCCAGCATTCTCATGCATCATGGAGGGGCTCAACAAACAGCAGGCTGCAATGGCACAGACACTTGGTGGGAGTGCTTTGACCGTTTCACACCAGAATGGTGGCGTTCTCCCACCATTCACTCTGCCACCACTTCTTGATGCATCAGATGCTTTATCTTCATGCTGCCAGCCCTTAGTACTAAAGCCGAAGCACTAGACTCTTCAGCATAGGGAGAAGGAGATGCTCAAGAAAGCTATAGCTTAGT GAATTTT GTTTTGGGACAT GTCTCATAT CTAGATTTG CTTTCTGTATGACGCCNGGTTTTTCTTGCTGCACTGT GGCAAGCGCTGGCTTAACTNGATTTCATTGGTTTGGCNGATAAAATTTAAGAAAAAAAAAAAA ]
[+] EMBL AU056198 [ GAA GCTGCGCGGCAAAGATG ACATTGTTAATGCTGGGATAGCTGGTTGTT GCACTGGCCTTGCTTTGAGCTTTCCAGGAACACCACAAGCCTTGCTCCAAAGCTGTGCAACCTTTG CAGCATTCTCATGCATCATGGAGGGGCTCAACAAACAGCAGGCTGCAATGGCACAGACACTTGGTGGGAGTGCTTTGACCGTTTCACACCAGAATGGTGGCGTTCTCCCACCATTCACTCTGCCACCACTTCTTGATGCATCAGATGCTTTATCTTCATGCTGCCAGCCCTTAGTACTAAAGCCGAAGCACTAGACTCTTCAGCATAGGGAGAAGGAGATGCTCAAGAAAGCTATAGCTTAGT GAATTTT GTTTTGGGACAT GTCTCATAT CTAGATTTG CTTTCTGTATGACGCCAGGTTTTTCTTGCTGCACTGT GGCAAGCGCTGGCTTAACTAGATTTCATTGGTTTGGCAGATAAAATTTAAGAAAAAAAAAAAA ]
[+] EMBL AU056197 [ GAAGGCTGCGCGGCAAAGATG ACATTGTTAATGCTGGGATAGCTGGTTGTT GCACTGGCCTTGCTTTGAGCTTTCCAGGAACACCACAAGCCTTGCTCCAAAGCTGTGCAACCTTTG CAGCATTCTCATGCATCATGGAGGGGCTCAACAAACAGCAGGCTGCAATGGCACAGACACTTGGTGGGAGTGCTTTGACCGTTTCACACCAGAATGGTGGCGTTCTCCCACCATTCACTCTGCCACCACTTCTTGATGCATCAGATGCTTTATCTTCATGCTGCCAGCCCTTAGTACTAAAGCCGAAGCACTAGACTCTTCAGCATAGGGAGAAGGAGATGCTCAAGAAAGCTATAGCTTAGT GAATTTT GTTTTGGGACAT GTCTCATAT CTAGATTTG CTTTCTGTATGACGCCAGGTTTTTCTTGCTGCACTGT GGCAAGCGCTGGCTTAACTAGATTTCATTGGTTTGGCAGATA ]
[+] EMBL AU055702 [ GAAGGCTGCGCGGCAAAGATG ACATTGTTAATGCTGGGATAGCTGGTTGTT GCACTGGCCTTGCTTTGAGCTTTCCAGGAACACCACAAGCCTTGCTCCAAAGCTGTGCAACCTTTG CAGCATTCTCATGCATCATGGAGGGGCTCAACAAACAGCAGGCTGCAATGGCACAGACACTTGGTGGGAGTGCTTTGACCGTTTCACACCAGAATGGTGGCGTTCTCCCACCATTCACTCTGCCACCACTTCTTGATGCATCAGATGCTTTATCTTCATGCTGCCAGCCCTTAGTACTAAAGCCGAAGCACTAGACTCTTCAGCATAGGGAGAAGGAGATGCTCAAGAAAGCTATAGCTTAGTGGAATTTTGGTTTTGGGACATGGCCNCATATCCAAGATTTGCCTTTCTGGATGACGCCAGGTTTTCCTTGCTGGACTGTNGGCAA ]
[+] EMBL BI796173 [ GCTGCGCGGC AAGATGCACA TGGTAATGCT GGATA CT GTTGTTCGCACT GCCTTGCTTTGAGCTTTCCAGGAACACCACAA CCTTGCTCCAAAGCTGTGCAACCTTT CAGCATTCTCATGCATCATGGAGGGGCTCAACAAACAGCAGGCTGCAATGGCACAGACACTTGGTGGGAGTGCTTTGACCGTTTCACACCAGAATGGTGGCGTTCTCCCACCATTCACTCTGCCACCACTTCTTGATGCATCAGATGCTTTATCTTCATGCTGCCAGTCCTTAGTACTAAAGCCGAAGCACTAGACTCTTCAGCATAGGGAGAAGGAGATGCTCAAGAAAGCTATAGCTTAGT GAATTTT GTTTTGGGACAT GTCTCATAT CTAGATTTG CTTTCTGTATGACGCCAGGTTTTTCTTGCTGCACTGT GGCAAGCGCTGGCTTAACTAGATTTCATTGGTTTGGCAGATAAAATTTAAGAAAAATTCGTCTCTGTGGCACCTGTTCTGTAATCTTTCCATCTTGCTATCCATATCTGGGATGCTGAACGTTATCAGTTATCACCTGGAAGCATGGTATTCTTCATATTTATCAAAAA]
consensusID : consensus_12110#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 579 fasta sequence
[AGAGAAAGAGGGGGGGGTTGTGTTGTGAGCAGCGATGGCGGCGAAACGCGGGAGCAG-TCGGACGGCGACGAGCTCGGCGGCGGCGGCGCCAGN-GNG-AACCAGCCCCAACGACGGGGGCGCGTCTCCGCCTCCCCTCGCCGCCGCGCCCGCCGTATGCTTCATCCGCTCCGCCGGAGACTTCGCCGGTGGCGCCTTCATCGGATCTATCGTCGGATATGGACAAGGTTTGTTCACTAAGAAGGGATTTAAGGGCTCATTCAGCACCGCA-GGTCTTCTGCCAAGACTTTTGCAGTTCTCTCTGGCGTCCAGAGTCTGGTTGTGTGCTTGTTGAGAAGGCTNCGCGGCAAAAATGACATTGTTAATGCTNGGATAGCTGGTTGTTGCACTTGCCTTGCTTTTAG-TTTCCAGGGACACCANAAGCCTTGCTCCAAAGCTGTGCAACCTTTGAAGCATTCTMATGCATCATGGGGGGGGCTCAACAAACAGCAGGCTGCAATGGCACAGACACTTGGGGGGGRGTGCTTTGCCCGTTTMACACCAGAGTGGKGGCGTTCTCCCMCCATTCACTCTGCCACCACT]
[+] EMBL C27105 [AGAGAAAGAGGGGGGGGTTGTGTTGTGAGCAGCGATGGCGGCGAAACGCGGGAGCAGNTCGGACGGCGACGAGCTCGGCGGCGGCGGCGCCAGN GNGNAACCAGCCCCAACGACGGGGGCGCGTCTCCGCCTCCCCTCGCCGCCGCGCCCGCCGTATGCTTCATCCGCTCCGCCGGAGACTTCGCCGGTGG GCCTTCATCGGATCTATCGTCGGATATGGACAAGGTTTGTTCACTAAGAAGGGATTTAAGGGCTCATTCAGCACCGCA GGTCTTCTGCCAAGACTTTTGCAGTTCTCTCTGGCGTCCAGAGTCTGGTTGTGTGCTTGTTGAGAAGGCTNCGCGGCAAAAATGACATTGTTAATGCTNGGATAGCTGGTTGTTGCACTTGCCTTGCTTTTAG TTTCCAGGGACACCANAAGCCTTG ]
[+] EMBL OSS1549A [ AAGAGGGGGGGGTTGTGTTGTGAGCAGCGATGGCGGCGAAACGCGGGAGCAG TCGGACGGCGACGAGNTCGGCGGCGGCGGCGCCCNNGGNG AACCAGCCCCAACGACGGGGGCGCGTNTCCGCCTCCCCTCGCCGCCGCGCCCGCCGTATGTTTCATCCGCTCCGCCGGAGACTTCGCCGGTGGCGCCTTCATCGGATCTATCGTCGGATATGGACAAGGTTTGTTCACTAAGAAGGGATTTAAGGGCTCATTCAGCACCGCAGGGTCTTCT ]
[+] EMBL BE229568 [ cGAGCAGCGTBGGCGGCGAAACGCGGGASCAG TCGGACGGCGACGAVMTCGGCGGCGGC GC CCAG GNG AACCAGCCCCAACGACGGGGGCGCGTCT CGCCTCCCCTCGCCGCCGCGCCCGCCGTATGCTTCATCCGCTCCGCCGGAGACTTCGCCGGTGGCGCCTTCATCGGATCTATCGTCGGATATGGACAAGGTTTGTTCACTAAGAAGGGATTTAAGGGCTCATTCAGCACCGCA GGTCCTCTGCCAAGACTTTTGCAGTTCTCTCTGGCGTCCAGAGTCTGGTTGTGTGCTTGTTGAGAAGGCTGCGCGGCAAAGATGACATTGTTAATGCTGGGATAGCTGGTTGTTGCACTGGCCTTGCTTTGAGCTTTCCAGGRACACCACAAGCCTTGCTCCAAAGCTGTGCAACCTTTGAAGCATTCTMATGCATCATGGGGGGGGCTCAACAAACAGCAGGCTGCAATGGCACAGACACTTGGGGGGGRGTGCTTTGCCCGTTTMACACCAGAGTGGKGGCGTTCTCCCMCCATTCACTCTGCCACCACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 CAGAGCGCGCAATGTTCGGACGCGCCAGGTGCTCGACCTCGGCCCCCGCCGCCGGCGAGC 60
consensus_12110#1 ------------------------------------------------------------
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 GGCGCGCTCTTCCCGTCGACCCTCTCTCCCTCCCTCGCCTACTCGTCTCCGCCGCCACCA 120
consensus_12110#1 ------------------------------------------------------------
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 CCCCCGGCGCCGCCGCCCCGGCCGTCTCCACCCTACACGCCGCCGCTCTCAAGCTGGGGG 180
consensus_12110#1 ------------------------------------------------------------
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 TCCTCCCCTCCTCGCTCCCGGCCTCCAACGCCCTCGTCTCCGCCTACTCCCTCTCCGGCC 240
consensus_12110#1 ------------------------------------------------------------
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 TCCTCCCCTGCGCGCTCCGCGCCTTCTCCCTCATCCCCCACCCTTCCACCGGATCCTACA 300
consensus_12110#1 ------------------------------------------------------------
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 CCGCCATCCTCTCCGCGCTCTCCCGCCACGGCCGCCGCCGGGAGGCCCTCTCCCTCTTCT 360
consensus_12110#1 ------------------------------------------------------------
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 CCGCCGCCGCGGTCGCCCGCCCCGACGCCGAGCTCCTCTCCTGCGTCGTCTCCTGCTGCC 420
consensus_12110#1 ------------------------------------------------------------
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 GCCGCGCATCCGCCTCCCTCCCCGCTCGCGCCGCGCACGCCTACGGGGTAAAGACCGCGC 480
consensus_12110#1 ------------------------------------------------------------
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 CACTGCTGGCCTTCTACGCCTCGGCCGGCCCGGCGCTCGTCGCGCTGTATGCGATGTGTG 540
consensus_12110#1 ------------------------------------------------------------
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 GGAGGGTGAGCGCGGCCAAGAGGATCTTTGATCGTATGGACGGCGAGGACGTGGTGTCCT 600
consensus_12110#1 ------------------------------------------------------------
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 GGAACGCGATGATTGGGGGGTTCGCTGGTGCCGGGATGAATGGCGAGGCGTGGGATTGCT 660
consensus_12110#1 ------------------------------------------------------------
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 TCCGGGAGATGCGCGCAAGAGGTGTTCGAGGGAATGCCCGTACCGCGGTTGCTGTGCTGG 720
consensus_12110#1 ------------------------------------------------------------
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 GGGCTTGTGATTTGGAGTCTGGAAGACAGGTCCATGGGCACATGGTGAGAAACCATGGTG 780
consensus_12110#1 -----------------------------------------------GTAATCTACGGGA 13
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 ATAGTGGTTCAAACGCAATTCTGTGGAATGCGTTGATGAACATGTATTCACGTGTTGGAT 840
consensus_12110#1 TTTACAGAGCGCGCAATGTTCGGACGCGCCAGGTGCTCGACCTCGGCCCCCGCCGCCGGC 73
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 GTGTCGACAATGCAGAACATGTGTTCTTCGAGATTGAACGGAAGGATGTTGTGTCATGGA 900
consensus_12110#1 GAGCGGCGCGCTCTCCCCGTCGACCCTCTCTCCCTCCCTCGCCTACT--CGTCTCCGCCG 131
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 ATGTGATGATAGGTGCTTTCGCAAAGAATGGGCATGGAGAGAGGGCACTTGAACTTGTGG 960
consensus_12110#1 CGACCACCCCCGGCGCCGCCGCCCCGGCCGTCTCCACCCTACACGCCGCCGCCCTCAAGC 191
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 ATGCAATGTTGCGTTGTGGGATGCAGCCAGATTCAGTGACATTCACAACTCTGCTCATGG 1020
consensus_12110#1 TGGGGGTCCTCCCTCCTCGCTCCCGGCCTCCAACGCCCTCGTCTCCGCCTACTCCCTCTC 251
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 CATGCTGCCACTGTGGCTTGGTTGATGAAGGTCTTGCGCTTTTTGAGCGGTTTGTGGAAA 1080
consensus_12110#1 CGGCCTCCTCTTGGGCCGTCACCAAGATTAGATCCGGGGGATCGGATCTCTCGGCGGCGG 311
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 ATTCTGCCCTCATCCCTACTATGGAGCAGTGTGCTTGTATTGTGGATTTGCTTTCACGAG 1140
consensus_12110#1 TGGCGGCGGCGGCGGCGAGAATGAACAGCCCCCGGCGATTTGTGAATCTG-------GTG 364
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 CTGGGAGGTTCAGAGAGGCTGCTGGATTTATTGATCAGATGCCAATCAGACCAAATGCAG 1200
consensus_12110#1 CTCGACGGCATCGCCCGGCGGCAGCCGTCCTACGGCCTGCACCGCGTCGACGTCTCGACG 424
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 TTGTATGGGGTGCTTTGTTATCTGGAAGTAGGATGCACCATGATGTGGATCATGCACAGA 1260
consensus_12110#1 CTGTTCCGTCCGCTC-GCCGCCGATGAGGATGAAGAAGGGCGGCGCGGCGGCGCTATGGA 483
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 TCGCTTTTGAGAAACTGGTTCAATTGGAGCCAGATAACCCTGGAAATTTTGTGACTATGT 1320
consensus_12110#1 --AGTCGAGGACGCTCAGCTGCCTCGCGCCGCCATGATCTTCCACCCT---TGCCCATCA 538
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 CAAATATATATGCAAAGGCCGGAATGGTTGAGGATGCAAAGAGAGTTAGGATGATGATTG 1380
consensus_12110#1 TACGGGCTTCCGAGTTGGCCCTCCT--CCGTGGATTTCATGCCTCTCGGCAGCGGCAGCG 596
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 ACAG-GGAGGAGTTAGTGAAGCCTTCTGGACAAAGTCGTGTTCAAGCTATGTAAGAAGTG 1439
consensus_12110#1 GCAGCGGCAGAGGCGGCGAAAAGAAC--GACGTGGTCGCCGTCGA-CTACAGCGGCAGCG 653
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 ACAGCAAGTAAATACCTGGCTGCTAGACTGTTAGGCCTAAGTAAGACCTACCCTTTTCTG 1499
consensus_12110#1 GGGTGCTGTACGGCGCCGCCTCGCGCGCCGTCACCATCCTTCCCCCGATGAACACACCCA 713
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 TAAGCTTGATTTCTTGTTGCACCATCCTTCAAGTAATTGTATAGCTACAAAAGATGCACC 1559
consensus_12110#1 -AGGCCTTCCCGGCTGTCGCTCACCATCGGAGGCAACATCTACGTCATGGAAAGGTACCC 772
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 ACCTCTGTGGCCTCTGTTGTTTTTGTTCTTCACAATAATGTACCTTTTGTTCGTACTGGT 1619
consensus_12110#1 GGCCTCCTCCCAATCCCCCTCCTCTTGCTTCGAGGCTTCTCGTCCACGATCGCCACCCAA 832
consensus_12110#2 ------------------------------------------------------------
consensus_12110#3 ------------------------------------------------------------
consensus_12110#0 ATTTCTTCCTACGAAGATGGCAGAGACTATGACCAATAACCTACCTTCTGTTTTGTAACT 1679
consensus_12110#1 ACCACCCCTTCGCCACGCCGCACTGGCACTGGCGCCTCCTCCCTTCGCCGCCCTTCGCCT 892
consensus_12110#2 --------CGGCTTGTTGAGAAGCTGCGC-----GGCAAAGATGACATTGTT---AATGC 44
consensus_12110#3 ------AGAGAAAGAGGGGGGGGTTGTGTTGTG-AGCAGCGATGGCGGCGA----AACGC 49
consensus_12110#0 GCACAGAATGGGTTATGAATGCCCAGCATTCTTTAGTTACTGTGATTTTTTTCTCTACGC 1739
consensus_12110#1 TCACC------GCCGATGATGCCCTTGAT-----AGCATCCGCAACTTTTTC---CAAGA 938
* * *
consensus_12110#2 TGGGAT--AGCTGGTTGTTGC-ACTGGCCTTGCTTTGAGCTTTC------CAGGAACACC 95
consensus_12110#3 GGGAGC--AGTCGGACGGCG--ACGAGCTCGGCGGCGGCGGCGC------CAGNGNGA-- 97
consensus_12110#0 TTCATTTTAAAAAGATAACAACGCAATCTTTCTATTTGCATCTCTTCTAACTGGGTAATA 1799
consensus_12110#1 TGATGATGACTTCCTCACCGC--CTACACGGCCGTCGGCGGCTCATGCATCTGGATGACA 996
* * * * * *
consensus_12110#2 -ACAAGCCTTGCTCCAAAGCTGTGCAACCTTTGCAGCATTCTCATGCATCATGGAGGG-- 152
consensus_12110#3 -ACCAGCC-----CCAACGACGGGGGCGCGTCTCCGCCTCCCC-----TCGCCGCCGC-- 144
consensus_12110#0 AACAAATTGCATGCTAATAAAACTTTCAATGTGCGCAGTTGCTTTTAGTCATCATGATTT 1859
consensus_12110#1 GTGCAGAG------CACCGTCGCCGCCGCCGCGGGGACTTACTCCT--TTGACACGTC-- 1046
* * * *
consensus_12110#2 GCTCAACAAACAGCA-GGCTGCAATGGCAC-----AGACACTTGGTGGGAGTGCTTTGAC 206
consensus_12110#3 GCCCGCCGTATGCTTCATCCGCTCCGCCGG-----AGAC-TTCGCCGGTGGCGCCTTCAT 198
consensus_12110#0 GTCTACCGTGCTTCA-GAGTGCAGCAACACT---CATGCATCCACTACCAACAGTTCATT 1915
consensus_12110#1 CACCGCCACATGGACCAAGCTCGGCGACTGGTTGCTTCCGTTCAGAGGCCGCGCCGAGTA 1106
* * * *
consensus_12110#2 CG---TTTCACACCAGA-ATGG-TGGCGTTCTCCCACCATTCACTCTGCCACCACTTCTT 261
consensus_12110#3 CGG-ATCTATCGTCGGATATGGACAAGGTTTGTTCACTAAGAAGGGATTTAAGGGCTCAT 257
consensus_12110#0 TGGTGTCTACCATTGGATATGGACAAGGTTTGTTCACTAAGAGGGGATTTAAGGGCTTGT 1975
consensus_12110#1 TGCGCCCGAGCACAAGCTCTGGTTCGCGCTC-TCCTCCGACGGCAACGAGCTGTGCGCGT 1165
* * * *** * * * * *
consensus_12110#2 GATGCATCAGATGCTTTATCTTCATGCTGCCAGCCCTTAGTACTAAAGCCGAAGCACTAG 321
consensus_12110#3 TCAGCACCGCAGGTCTTCTGCCAAGACTTTT-GCAGTTCTCTCTGGCGTCCAGAGTCTGG 316
consensus_12110#0 TCAGCACCCAGGGTCCTCTGCCAAGTTTT---GCAGTTCTCTCTGGCGTCCATTGTCTAG 2032
consensus_12110#1 CCGACCTCGCCGCCGCGGCGCAATGTGTGGAAGGTGAGCCCCGTGTCGCCCAGCGGCTCA 1225
* * * * * * * * **
consensus_12110#2 ACTCTTCAGCATAGGGAGAAGGAGATGCT-CAAGAAAGCTATAGCTTAGTGAATTTTGTT 380
consensus_12110#3 --TTGTGTGCTTGTTGAGAAGGCTNCGCGGCAAAAATGACATTG-TTAATGC-TNGGATA 372
consensus_12110#0 --TTGTGTGCCTGTTGAGAAGGCTGCGTGGCAAAGATGACATTG-TTAATGC-TGGAATA 2088
consensus_12110#1 -CCGGTGACGCCGCACCTCGTCCCTCTCGGCGCCGGCAG-GTTCTGCATTGTCAGATTCA 1283
* * * * **
consensus_12110#2 TTGGGACATGTCTCATATCTAGATTTGCTTTCTGTATGACGCCAGGT-TTTTCTTGCTGC 439
consensus_12110#3 GCTGGTTGTTGCACTTGCCTTGCTTTTAGTTTCCAGGGACACCANAAGCCTTGCTCCAAA 432
consensus_12110#0 GCTGGTTGTTGCACTAGCCTTGCTCTGAGCTTTCCA-GATGCAGC---TCATGTTGATTG 2144
consensus_12110#1 TGTACAAAGGGTGGAGGTCCAACTTTGATTTCGACGAGAAATTCG---CGGTGTTCACCG 1340
* * * * ** * *
consensus_12110#2 ACTGTGGCAAGCGCTG--GCTTAACTAGATTTCATTGGTTTGGCAGATAAAATTTAAGAA 497
consensus_12110#3 GCTGTG-CAACCTTTGAAGCATTCTMATGCATCATGGGGGGGGCTCAACAAACAGCAGGC 491
consensus_12110#0 GCTTTTGC--TTGACGAGGTCTTACCAGGGAGAAGAAGTTAATTATGGCAACCCTGAATC 2202
consensus_12110#1 GCGTCGAGGTTCGGCGTGGTTGTAATAAGAACAGCAGCACAACGCTCCAGATGGTTAATC 1400
* * * * * *
consensus_12110#2 AAAAAA---AAAACTGTGGCACCTGTTCTGTAAT-CTTTCCATCTTGCTATCCATATCTG 553
consensus_12110#3 TGCAAT---GGCACAG--ACACTTGGGGGGGRGTGCTTTGCCCGTTTMACACCAGAGTGG 546
consensus_12110#0 TGCA-T---AGCATTTTAATGTCT-CACTGCAACACGTTGTCTGGATATTCGTAAAATAA 2257
consensus_12110#1 ATAGGTCCAGACGGTACAGCCTTCTCGATAGGGTATGTGACTCTCGTGTGTTTTAAATAG 1460
* *
consensus_12110#2 GGATGCTGAACGTTATCAGTTATCACCTGGAAGCATGGTATTCTTCATATTTATCAAAAA 613
consensus_12110#3 KGGCGTTCTCC--CMCCATTCACT--CTGCCACCACT----------------------- 579
consensus_12110#0 CATAGC------------------------------------------------------ 2263
consensus_12110#1 AAATTTATGAATAAAAACACTTCTCA---------------------------------- 1486
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||