These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 978 fasta sequence [GAGTAGAAAAAAAAAAAGAAAGAAGATACTCGAGTATCCTCCTCCCCCTTGGCGTAAACGAAAATCTCCCGTCTCGTCGTCTCCTCCGCTCCTTGCGCCAGCCAAGACGAGCCGCGGCTGCCGATCGCCATCGCAGGGGAGGGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGATGTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTCCGCCTTCTGGAGGATATAGCAAACCGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTGAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGTGAGCTGACCGGAGACGTTCTTTTCCCGGTGACGTTCACCTGCATCACGCAGAAGCCTATGAAGGGCGAGGTCTT-AG-TTGGCTCCGTGGACAAGAT-CCT-CAAGCATGGCATTTTCCTCAAATCTGGA-CCGATAGAAAGCATCTTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGAGAACG-CGGTGTTCATGAATGAACACTCGAAGCTGGAGAAGGACACCGT-CGTGCGCTT-CAAGGT-CAT-GGGGTTCCGCTGGATGGAAG-CCGATCG-CCAGTT-CCAGCT-CCTTGCTACCCTGGCTGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTCTGCTGCACATTTTGCTACCTTGATGAATGGATTTGAAATGTGTTAGCCTTAACCTGCTGTCTGTAGTTTGGTGTCGTGATGACTGATCATACCTGTATCGTATCTGTGATGCTGGTTGTTGATGTAAATGGCATTAGGCCATATGTTTAGCATTTCAGCATGATGAGAATTGTCATGGCTGATGAACCTCTATTTCCTATGGCTGCTCACCGTTCTACCATGCATATATTTGCTGCCTTCCTTTCTGAGAAAAAAAAAAAAAA] [+] EMBL CF308485 [GAGTAGAAAAAAAAAAAGAAAGAAGATACTCGAGTATCCTCCTCCCCCTTGGCGTAAACGAAAATCTCCCGTCTCGTCGTCTCCTCCGCTCCTTGCGCCAGCCAAGACGAGCCGCGGCTGCCGATCGCCATCGCAGGGGAGGGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGATGTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTCCGCCTTCTGGAGGATATAGCAAACCGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTGAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGTGAGCTGACCGGAGACGTTCTTTTCCCGGTGACGTTCACCTGCATCACGCAGAAGCCTATGAAGGGCGAGGTCTT AG TTGGCTCCGTGGACAAGAT CCT CAAGCATGGCATTTTCCTCAAATCTGGA CCGATAGAAAGCATCGTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGAGAACG CGGTGTTCATGAATGAACACT ] [+] EMBL OS0119A [ CGAGTATCCTCCTCCCCCTTGGCGTAAACGAAAATCTCCCGTCTCGTCGTCTCCTCCGCTCCTTGCGCCA CCAAGACGAGCCGCGGCTGCCGATCGCCATCGCAGGGGAGGGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGATGTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCC NAAGGCTGTCATTGTCCG CTTCTGGAGGATATAGCAAACC GNAGG CTCCAAGGATCATGGTTACTACATTGCTGTGAGTGAGCTGAA GCGATATNAG AGGGAA ] [+] EMBL CF279969 [ tagaaGGCGTAAACG AAATCTCCCGTCTCGTC TCTCCTCCGCTCCTTGC CCA CC AGAC AGCCG GGCTGCCGATCGCCATCGCAGGGGA GGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGATGTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTCCGCCTTCTGGAGGATATAGCAAACCGGAAGGCCTCCAAGGATCATGGGTACTACATTGCTGTGAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGTGAGCTGACCGGAGACGTTCTTTTCCCGGTGACGTTCACCTGCATCACGCAGAAGCCTATGAAGGGCGAGGTCTT AG TTGGCTCCGTGGACAAGAT CCT CTAGCATGGCATTTTCCTCAAATCTGGA CCGATAGAAAGCATCTTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGAGAACG CNGTGTTCATGAATGAACACTCGAAGCTGGGGAAGGACACCGT CGTGCGC T CCAGGT CATGGGGGTTCCGCTGGATGGAAG CCGATCG CCAGTT CCAGCT CCTTGCTACCCTGGCTGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTCTGCTGCACATTTTG ] [+] EMBL AK062374 [ TCTCCCGTCTCGTCGTCTCCTCCGCTCCTTGCGCCAGCCAAGACGAGCCGCGGCTGCCGATCGCCATCGCAGGGGAGGGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGATGTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTCCGCCTTCTGGAGGATATAGCAAACCGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTGAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGTGAGCTGACCGGAGACGTTCTTTTCCCGGTGACGTTCACCTGCATCACGCAGAAGCCTATGAAGGGCGAGGTCTT AG TTGGCTCCGTGGACAAGAT CCT CAAGCATGGCATTTTCCTCAAATCTGGA CCGATAGAAAGCATCTTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGAGAACG CGGTGTTCATGAATGAACACTCGAAGCTGGAGAAGGACACCGT CGTGCGCTT CAAGGT CAT GGGGTTCCGCTGGATGGAAG CCGATCG CCAGTT CCAGCT CCTTGCTACCCTGGCTGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTCTGCTGCACATTTTGCTACCTTGATGAATGGATTTGAAATGTGTTAGCCTTAACCTGCTGTCTGTAGTTTGGTGTCGTGATGACTGATCATACCTGTATCGTATCTGTGATGCTGGTTGTTGATGTAAATGGCATTAGGCCATATGTTTAGCATTTCAGCATGATGAGAATTGTCATGGCTGATGAACCTCTATTTCCTATGGCTGCTCACCGTTCTACCATGCATATATTTGCTGCCTT ] [+] EMBL CF324419 [ CCGCGGCTGCCGATCGCCATCGCAGGGGAGGGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGATGTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTCCGCCTTCTGGAGGATATAGCAAACCGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTGAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGTGAGCTGACCGGAGACGTTCTTTTCCCGGTGACGTTCACCTGCATCACGCAGAAGCCTATGAAGGGCGAGGTCTT AG TTGGCTCCGTGGACAAGAT CCT CAAGCATGGCATTTTCCTCAAATCTGGA CCGATAGAAAGCATCTTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGAGAACG CGGTGTTCATGAATGAACACTCGAAGCTGGAGAAGGACACCGT CGTGCGCTT CAAGGT CAT GGGGTTCCGCTGGATGGAAG CCGATCG CCAGTT CCAGCT CCT ] [+] EMBL AU083419 [ ccttatnnAAGGNCGAGGTCTTAAGTTTGGCTCCGTGGACAAGATCCCTCCAAGCNTGGCATTTNCCTCAAATCTGGACCCNATAGAAAGCATCTTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGAGAACGCCGGTGTTCATGAATGAACACTCGAAGCTGGAGAAGGACACCGTCCGTGCGCTTCCAAGGTCCAT GGGGTTCCGCTGGATGGAAGCCCGATCGCCCAGTTCCCAGCTCCCTTGCTACCCTGGCTGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTCTGCTGCACATTTTGCTACCTTGATGAATGGATTTGAAATGTGTTAGCCTTAACCTGCTGTCTGTAGTTTGGTGTCGTGATGACTGATCATACCTGTATCGTATCTGTGATGCTGGTTGTTGATGTAAATGGCATTAGGCCATATGTTTAGCATTTCAGCATGATGAGAATTGTCATGGCTGATGAACCTCTATTTCCTATGGCTGCTCACCGTTCTACCATGCATATATTTGCTGCCTTCCTTTCTGAGAAAAAAAA ] [+] EMBL AA750232 [ GAGAAGGACACCGT CGTGCGCTT CAAGGT CAT GGGGTTCCGCTGGATGGAAG CCGATCG CCAGTT CCAGCT CCTTGCTACCCTGGCTGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTnsg ] [-] EMBL CF279970 [ AT GGGGTTCCGCTGGATGGAAG CCGATCG CCAGTT CCAGCT CCTTGCTACCCTGGCTGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTCTGCTGCACATTTTGCTACCTTGATGAATGGATTTGAAATGTGTTAGCCTTAACCTGCTGTCTGTAGTTTGGTGTCGTGATGACTGATCATACCTGTATCGTATCTGTGATGCTGGTTGTTGATGTAAATGGCATTAGGCCATATGTTTAGCATTTCAGCATGATGAGAATTGTCATGGCTGATGAACCTCTATTTCCTATGGCTGCTCACCGTTTTACCATGCATATATTTGCTGCCTTCCTTTTTGAGAAAAAAAAAAAAAA] consensusID : consensus_12116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 924 fasta sequence [CAAACTCCATTTGCATTTCTGGGCGGAGGAACAACCGCCGGCGATCAGGGCTAGAGAGCTCGCCGTGGACAGCCTCCTCCTAGCTCCCCTCTCCCCGCCGCACGCCGTCTCCTCCAATCTGCGGCCTGACCTCCTCGCGCGCTCGGCCGGCACGGCAAGAAAGGCTGACCTCCGTCTCCGTTCGAATCGGAGCCGAAGGCAATCGGCCATGGTTTTCCTTAAGGTGGATATGTCTTGGAATGTGTTGATCTCACCTAGCGAGCTGAGCCCCAAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTTAGTCTTCTGGAGGAGATAGCAAACAGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTCAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGCGAGCTGACCGGAGATGTTCTTTTCCCAGTGACATTCACCTGCATCACACAGAAGCCTACGAAGGGCGAGATCTTAGTTGGCTCTGTGGATAAGATCCTCAAGCATGGCGTGTTCCTCAAATCTGGACCAATAGAAAGCATCTTCCTGTCAGAGAAGACACTGAGCGACTACAAGTACATCGGTGGGGAGAACCCTATGTTCATGAATGACCACTCGAAGCTGGAGAAGGACACCGCTGTGCGCTTCAAGGTGATGGGTTTCCGCTGGATGGAAGCTGATCGCCAGTTCCAGATCCTTGCTACCCTGGCTGGTGACTATCTTGGGCCACTATGAACTGCTTCCACAGGTTAGTGGTGATGAATGGATCTGAAATGTATTATCTTTAACCTGCTGTCTGTAGTTTGATGTCATGATGATGATGATTAGACCAGTAGCTGTGATGCTGGCTGTTGATGTAAGTGACATTTGGCCCTATGTTTAGCATTTCAGCATGATGCGAATTGTCATGGCCGTTTAAAAAA] [+] EMBL CF295117 [CAAACTCCATTTGCATTTCTGGGCGGAGGAACAACCGCCGGCGATCAGGGCTAGAGAGCTCGCCGTGGACAGCCTCCTCCTAGCTCCCCTCTCCCCGCCGCACGCCGTCTCCTCCAATCTGCGGCCTGACCTCCTCGCGCGCTCGGCCGGCACGGCAAGAAAGGCTGACCTCCGTCTCCGTTCGAATCGGAGCCGAAGGCAATCGGCCATGGTTTTCCTTAAGGTGGATATGTCTTGGAATGTGTTGATCTCACCTAGCGAGCTGAGCCCCAAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTTAGTCTTCTGGAGGAGATAGCAAACAGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTCAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGCGAGCTGACCGGAGATGTTCTTTTCCCAGTGACATTCACCTGCATCACACAGAAGCCTACGAAGGGCGAGATCTTAGTTGGCTCTGTGGATAAGATCCTCAAGCATGG ] [-] EMBL CF295116 [ CAGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTCAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGCGAGCTGACCGGAGATG TCTTTTCCCAGTGACATTCACCTGCATCACACAGAAGCCTACGAAGGGCGAGATCTTAGTTGGCTCTGTGGATAAGATCCTCAAGCATGGCGTGTTCCTCAAATCTGGACCAATAGAAAGCATCTTCCTGTCAGAGAAGACACTGAGCGACTACAAGTACATCGGTGGGGAGAACCCTATGTTCATGAATGACCACTCGAAGCTGGAGAAGGACACCGCTGTGCGCTTCAAGGTGATGGGTTTCCGCTGGATGGAAGCTGATCGCCAGTTCCAGATCCTTGCTACCCTGGCTGGTGACTATCTTGGGCCACTATGAACTGCTTCCACAGGTTAGTGGTGATGAATGGATCTGAAATGTATTATCTTTAACCTGCTGTCTGTAGTTTGATGTCATGATGATGATGATTAGACCAGTAGCTGTGATGCTGGCTGTTGATGTAAGTGACATTTGGCCCTATGTTTAGCATTTCAGCATGATGCGAATTGTCATGGCCGTTTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12116#0 ------------------------------------------------GAGTAGAAAAAA 12 consensus_12116#1 CAAACTCCATTTGCATTTCTGGGCGGAGGAACAACCGCCGGCGATCAGGGCTAGAGAGCT 60 * **** * consensus_12116#0 AAAAAGAAAGAAGATACTCGAGTATCCTCCTCCCCCTTGGCGTAAACGAAAATCTCCCGT 72 consensus_12116#1 CGCCGTGGACAGCCTCCTC--CTAGCTCCCCTCTCCCCGCCGCACGCCGTCTCCTCCAAT 118 * * * *** ** * ** * ** * ** * * **** * consensus_12116#0 CTCGTCGTCTCCTCCGCTCCTTGCGC-CAGCCAAGACGAGCCGCGGCTGCCGATCGCCAT 131 consensus_12116#1 CT--GCGGCCTGACCTCCTCGCGCGCTCGGCCGGCACG-GCAAGAAAGGCTGACCTCCGT 175 ** ** * ** * * **** * *** *** ** ** ** * ** * consensus_12116#0 CGCAGGG-GAGGGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGAT 190 consensus_12116#1 CTCCGTTCGAATCGGAGCCGAA----GGCAATCGGCCATGGTTTTCCTTAAGGTGGATAT 231 * * * ** **** * * ******* ********************** ** consensus_12116#0 GTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCCGCAA 250 consensus_12116#1 GTCTTGGAATGTGTTGATCTCACCTAGCGAGCTGAGCCCCAAGGGTCTCTTGCTCCGCAA 291 ***** ********************** *********** ******************* consensus_12116#0 GGCTGTCATTGTCCGCCTTCTGGAGGATATAGCAAACCGGAAGGCCTCCAAGGATCATGG 310 consensus_12116#1 GGCTGTCATTGTTAGTCTTCTGGAGGAGATAGCAAACAGGAAGGCCTCCAAGGATCATGG 351 ************ * *********** ********* ********************** consensus_12116#0 TTACTACATTGCTGTGAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGTGAGCTGAC 370 consensus_12116#1 TTACTACATTGCTGTCAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGCGAGCTGAC 411 *************** *********************************** ******** consensus_12116#0 CGGAGACGTTCTTTTCCCGGTGACGTTCACCTGCATCACGCAGAAGCCTATGAAGGGCGA 430 consensus_12116#1 CGGAGATGTTCTTTTCCCAGTGACATTCACCTGCATCACACAGAAGCCTACGAAGGGCGA 471 ****** *********** ***** ************** ********** ********* consensus_12116#0 GGTCTTAGTTGGCTCCGTGGACAAGATCCTCAAGCATGGCATTTTCCTCAAATCTGGACC 490 consensus_12116#1 GATCTTAGTTGGCTCTGTGGATAAGATCCTCAAGCATGGCGTGTTCCTCAAATCTGGACC 531 * ************* ***** ****************** * ***************** consensus_12116#0 GATAGAAAGCATCTTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGA 550 consensus_12116#1 AATAGAAAGCATCTTCCTGTCAGAGAAGACACTGAGCGACTACAAGTACATCGGTGGGGA 591 ************** ***** ******** ********* ********* ******** consensus_12116#0 GAACGCGGTGTTCATGAATGAACACTCGAAGCTGGAGAAGGACACCGTCGTGCGCTTCAA 610 consensus_12116#1 GAACCCTATGTTCATGAATGACCACTCGAAGCTGGAGAAGGACACCGCTGTGCGCTTCAA 651 **** * ************* ************************* *********** consensus_12116#0 GGTCATGGGGTTCCGCTGGATGGAAGCCGATCGCCAGTTCCAGCTCCTTGCTACCCTGGC 670 consensus_12116#1 GGTGATGGGTTTCCGCTGGATGGAAGCTGATCGCCAGTTCCAGATCCTTGCTACCCTGGC 711 *** ***** ***************** *************** **************** consensus_12116#0 TGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTCTGCTGCACATTTTGC 730 consensus_12116#1 TGGTGACTATCTTGGGCCACTATGAACTGCTTC-----------------CACAGGTTAG 754 *************** ***************** **** ** consensus_12116#0 TACCTTGATGAATGGATTTGAAATGTGTTAGCCTTAACCTGCTGTCTGTAGTTTGGTGTC 790 consensus_12116#1 TGG--TGATGAATGGATCTGAAATGTATTATCTTTAACCTGCTGTCTGTAGTTTGATGTC 812 * ************ ******** *** * ********************** **** consensus_12116#0 GTGATGACTGATCATACCTGTATCGTATCTGTGATGCTGGTTGTTGATGTAAATGGCATT 850 consensus_12116#1 ATGATGA-TGATGAT--TAGACCAGTAGCTGTGATGCTGGCTGTTGATGTAAGTGACATT 869 ****** **** ** * *** ************ *********** ** **** consensus_12116#0 AGGCCATATGTTTAGCATTTCAGCATGATGAGAATTGTCATGGCTGATGAACCTCTATTT 910 consensus_12116#1 TGGCCCTATGTTTAGCATTTCAGCATGATGCGAATTGTCATGGCCGTTTAAAAAA----- 924 **** ************************ ************* * * ** consensus_12116#0 CCTATGGCTGCTCACCGTTCTACCATGCATATATTTGCTGCCTTCCTTTCTGAGAAAAAA 970 consensus_12116#1 ------------------------------------------------------------ consensus_12116#0 AAAAAAAA 978 consensus_12116#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||