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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 978 fasta sequence
[GAGTAGAAAAAAAAAAAGAAAGAAGATACTCGAGTATCCTCCTCCCCCTTGGCGTAAACGAAAATCTCCCGTCTCGTCGTCTCCTCCGCTCCTTGCGCCAGCCAAGACGAGCCGCGGCTGCCGATCGCCATCGCAGGGGAGGGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGATGTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTCCGCCTTCTGGAGGATATAGCAAACCGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTGAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGTGAGCTGACCGGAGACGTTCTTTTCCCGGTGACGTTCACCTGCATCACGCAGAAGCCTATGAAGGGCGAGGTCTT-AG-TTGGCTCCGTGGACAAGAT-CCT-CAAGCATGGCATTTTCCTCAAATCTGGA-CCGATAGAAAGCATCTTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGAGAACG-CGGTGTTCATGAATGAACACTCGAAGCTGGAGAAGGACACCGT-CGTGCGCTT-CAAGGT-CAT-GGGGTTCCGCTGGATGGAAG-CCGATCG-CCAGTT-CCAGCT-CCTTGCTACCCTGGCTGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTCTGCTGCACATTTTGCTACCTTGATGAATGGATTTGAAATGTGTTAGCCTTAACCTGCTGTCTGTAGTTTGGTGTCGTGATGACTGATCATACCTGTATCGTATCTGTGATGCTGGTTGTTGATGTAAATGGCATTAGGCCATATGTTTAGCATTTCAGCATGATGAGAATTGTCATGGCTGATGAACCTCTATTTCCTATGGCTGCTCACCGTTCTACCATGCATATATTTGCTGCCTTCCTTTCTGAGAAAAAAAAAAAAAA]
[+] EMBL CF308485 [GAGTAGAAAAAAAAAAAGAAAGAAGATACTCGAGTATCCTCCTCCCCCTTGGCGTAAACGAAAATCTCCCGTCTCGTCGTCTCCTCCGCTCCTTGCGCCAGCCAAGACGAGCCGCGGCTGCCGATCGCCATCGCAGGGGAGGGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGATGTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTCCGCCTTCTGGAGGATATAGCAAACCGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTGAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGTGAGCTGACCGGAGACGTTCTTTTCCCGGTGACGTTCACCTGCATCACGCAGAAGCCTATGAAGGGCGAGGTCTT AG TTGGCTCCGTGGACAAGAT CCT CAAGCATGGCATTTTCCTCAAATCTGGA CCGATAGAAAGCATCGTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGAGAACG CGGTGTTCATGAATGAACACT ]
[+] EMBL OS0119A [ CGAGTATCCTCCTCCCCCTTGGCGTAAACGAAAATCTCCCGTCTCGTCGTCTCCTCCGCTCCTTGCGCCA CCAAGACGAGCCGCGGCTGCCGATCGCCATCGCAGGGGAGGGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGATGTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCC NAAGGCTGTCATTGTCCG CTTCTGGAGGATATAGCAAACC GNAGG CTCCAAGGATCATGGTTACTACATTGCTGTGAGTGAGCTGAA GCGATATNAG AGGGAA ]
[+] EMBL CF279969 [ tagaaGGCGTAAACG AAATCTCCCGTCTCGTC TCTCCTCCGCTCCTTGC CCA CC AGAC AGCCG GGCTGCCGATCGCCATCGCAGGGGA GGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGATGTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTCCGCCTTCTGGAGGATATAGCAAACCGGAAGGCCTCCAAGGATCATGGGTACTACATTGCTGTGAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGTGAGCTGACCGGAGACGTTCTTTTCCCGGTGACGTTCACCTGCATCACGCAGAAGCCTATGAAGGGCGAGGTCTT AG TTGGCTCCGTGGACAAGAT CCT CTAGCATGGCATTTTCCTCAAATCTGGA CCGATAGAAAGCATCTTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGAGAACG CNGTGTTCATGAATGAACACTCGAAGCTGGGGAAGGACACCGT CGTGCGC T CCAGGT CATGGGGGTTCCGCTGGATGGAAG CCGATCG CCAGTT CCAGCT CCTTGCTACCCTGGCTGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTCTGCTGCACATTTTG ]
[+] EMBL AK062374 [ TCTCCCGTCTCGTCGTCTCCTCCGCTCCTTGCGCCAGCCAAGACGAGCCGCGGCTGCCGATCGCCATCGCAGGGGAGGGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGATGTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTCCGCCTTCTGGAGGATATAGCAAACCGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTGAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGTGAGCTGACCGGAGACGTTCTTTTCCCGGTGACGTTCACCTGCATCACGCAGAAGCCTATGAAGGGCGAGGTCTT AG TTGGCTCCGTGGACAAGAT CCT CAAGCATGGCATTTTCCTCAAATCTGGA CCGATAGAAAGCATCTTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGAGAACG CGGTGTTCATGAATGAACACTCGAAGCTGGAGAAGGACACCGT CGTGCGCTT CAAGGT CAT GGGGTTCCGCTGGATGGAAG CCGATCG CCAGTT CCAGCT CCTTGCTACCCTGGCTGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTCTGCTGCACATTTTGCTACCTTGATGAATGGATTTGAAATGTGTTAGCCTTAACCTGCTGTCTGTAGTTTGGTGTCGTGATGACTGATCATACCTGTATCGTATCTGTGATGCTGGTTGTTGATGTAAATGGCATTAGGCCATATGTTTAGCATTTCAGCATGATGAGAATTGTCATGGCTGATGAACCTCTATTTCCTATGGCTGCTCACCGTTCTACCATGCATATATTTGCTGCCTT ]
[+] EMBL CF324419 [ CCGCGGCTGCCGATCGCCATCGCAGGGGAGGGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGATGTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTCCGCCTTCTGGAGGATATAGCAAACCGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTGAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGTGAGCTGACCGGAGACGTTCTTTTCCCGGTGACGTTCACCTGCATCACGCAGAAGCCTATGAAGGGCGAGGTCTT AG TTGGCTCCGTGGACAAGAT CCT CAAGCATGGCATTTTCCTCAAATCTGGA CCGATAGAAAGCATCTTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGAGAACG CGGTGTTCATGAATGAACACTCGAAGCTGGAGAAGGACACCGT CGTGCGCTT CAAGGT CAT GGGGTTCCGCTGGATGGAAG CCGATCG CCAGTT CCAGCT CCT ]
[+] EMBL AU083419 [ ccttatnnAAGGNCGAGGTCTTAAGTTTGGCTCCGTGGACAAGATCCCTCCAAGCNTGGCATTTNCCTCAAATCTGGACCCNATAGAAAGCATCTTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGAGAACGCCGGTGTTCATGAATGAACACTCGAAGCTGGAGAAGGACACCGTCCGTGCGCTTCCAAGGTCCAT GGGGTTCCGCTGGATGGAAGCCCGATCGCCCAGTTCCCAGCTCCCTTGCTACCCTGGCTGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTCTGCTGCACATTTTGCTACCTTGATGAATGGATTTGAAATGTGTTAGCCTTAACCTGCTGTCTGTAGTTTGGTGTCGTGATGACTGATCATACCTGTATCGTATCTGTGATGCTGGTTGTTGATGTAAATGGCATTAGGCCATATGTTTAGCATTTCAGCATGATGAGAATTGTCATGGCTGATGAACCTCTATTTCCTATGGCTGCTCACCGTTCTACCATGCATATATTTGCTGCCTTCCTTTCTGAGAAAAAAAA ]
[+] EMBL AA750232 [ GAGAAGGACACCGT CGTGCGCTT CAAGGT CAT GGGGTTCCGCTGGATGGAAG CCGATCG CCAGTT CCAGCT CCTTGCTACCCTGGCTGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTnsg ]
[-] EMBL CF279970 [ AT GGGGTTCCGCTGGATGGAAG CCGATCG CCAGTT CCAGCT CCTTGCTACCCTGGCTGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTCTGCTGCACATTTTGCTACCTTGATGAATGGATTTGAAATGTGTTAGCCTTAACCTGCTGTCTGTAGTTTGGTGTCGTGATGACTGATCATACCTGTATCGTATCTGTGATGCTGGTTGTTGATGTAAATGGCATTAGGCCATATGTTTAGCATTTCAGCATGATGAGAATTGTCATGGCTGATGAACCTCTATTTCCTATGGCTGCTCACCGTTTTACCATGCATATATTTGCTGCCTTCCTTTTTGAGAAAAAAAAAAAAAA]
consensusID : consensus_12116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 924 fasta sequence
[CAAACTCCATTTGCATTTCTGGGCGGAGGAACAACCGCCGGCGATCAGGGCTAGAGAGCTCGCCGTGGACAGCCTCCTCCTAGCTCCCCTCTCCCCGCCGCACGCCGTCTCCTCCAATCTGCGGCCTGACCTCCTCGCGCGCTCGGCCGGCACGGCAAGAAAGGCTGACCTCCGTCTCCGTTCGAATCGGAGCCGAAGGCAATCGGCCATGGTTTTCCTTAAGGTGGATATGTCTTGGAATGTGTTGATCTCACCTAGCGAGCTGAGCCCCAAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTTAGTCTTCTGGAGGAGATAGCAAACAGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTCAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGCGAGCTGACCGGAGATGTTCTTTTCCCAGTGACATTCACCTGCATCACACAGAAGCCTACGAAGGGCGAGATCTTAGTTGGCTCTGTGGATAAGATCCTCAAGCATGGCGTGTTCCTCAAATCTGGACCAATAGAAAGCATCTTCCTGTCAGAGAAGACACTGAGCGACTACAAGTACATCGGTGGGGAGAACCCTATGTTCATGAATGACCACTCGAAGCTGGAGAAGGACACCGCTGTGCGCTTCAAGGTGATGGGTTTCCGCTGGATGGAAGCTGATCGCCAGTTCCAGATCCTTGCTACCCTGGCTGGTGACTATCTTGGGCCACTATGAACTGCTTCCACAGGTTAGTGGTGATGAATGGATCTGAAATGTATTATCTTTAACCTGCTGTCTGTAGTTTGATGTCATGATGATGATGATTAGACCAGTAGCTGTGATGCTGGCTGTTGATGTAAGTGACATTTGGCCCTATGTTTAGCATTTCAGCATGATGCGAATTGTCATGGCCGTTTAAAAAA]
[+] EMBL CF295117 [CAAACTCCATTTGCATTTCTGGGCGGAGGAACAACCGCCGGCGATCAGGGCTAGAGAGCTCGCCGTGGACAGCCTCCTCCTAGCTCCCCTCTCCCCGCCGCACGCCGTCTCCTCCAATCTGCGGCCTGACCTCCTCGCGCGCTCGGCCGGCACGGCAAGAAAGGCTGACCTCCGTCTCCGTTCGAATCGGAGCCGAAGGCAATCGGCCATGGTTTTCCTTAAGGTGGATATGTCTTGGAATGTGTTGATCTCACCTAGCGAGCTGAGCCCCAAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTTAGTCTTCTGGAGGAGATAGCAAACAGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTCAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGCGAGCTGACCGGAGATGTTCTTTTCCCAGTGACATTCACCTGCATCACACAGAAGCCTACGAAGGGCGAGATCTTAGTTGGCTCTGTGGATAAGATCCTCAAGCATGG ]
[-] EMBL CF295116 [ CAGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTCAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGCGAGCTGACCGGAGATG TCTTTTCCCAGTGACATTCACCTGCATCACACAGAAGCCTACGAAGGGCGAGATCTTAGTTGGCTCTGTGGATAAGATCCTCAAGCATGGCGTGTTCCTCAAATCTGGACCAATAGAAAGCATCTTCCTGTCAGAGAAGACACTGAGCGACTACAAGTACATCGGTGGGGAGAACCCTATGTTCATGAATGACCACTCGAAGCTGGAGAAGGACACCGCTGTGCGCTTCAAGGTGATGGGTTTCCGCTGGATGGAAGCTGATCGCCAGTTCCAGATCCTTGCTACCCTGGCTGGTGACTATCTTGGGCCACTATGAACTGCTTCCACAGGTTAGTGGTGATGAATGGATCTGAAATGTATTATCTTTAACCTGCTGTCTGTAGTTTGATGTCATGATGATGATGATTAGACCAGTAGCTGTGATGCTGGCTGTTGATGTAAGTGACATTTGGCCCTATGTTTAGCATTTCAGCATGATGCGAATTGTCATGGCCGTTTAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12116#0 ------------------------------------------------GAGTAGAAAAAA 12
consensus_12116#1 CAAACTCCATTTGCATTTCTGGGCGGAGGAACAACCGCCGGCGATCAGGGCTAGAGAGCT 60
* **** *
consensus_12116#0 AAAAAGAAAGAAGATACTCGAGTATCCTCCTCCCCCTTGGCGTAAACGAAAATCTCCCGT 72
consensus_12116#1 CGCCGTGGACAGCCTCCTC--CTAGCTCCCCTCTCCCCGCCGCACGCCGTCTCCTCCAAT 118
* * * *** ** * ** * ** * ** * * **** *
consensus_12116#0 CTCGTCGTCTCCTCCGCTCCTTGCGC-CAGCCAAGACGAGCCGCGGCTGCCGATCGCCAT 131
consensus_12116#1 CT--GCGGCCTGACCTCCTCGCGCGCTCGGCCGGCACG-GCAAGAAAGGCTGACCTCCGT 175
** ** * ** * * **** * *** *** ** ** ** * ** *
consensus_12116#0 CGCAGGG-GAGGGGGAGGGGGATCCTGGCAATCAACCATGGTTTTCCTTAAGGTGGAGAT 190
consensus_12116#1 CTCCGTTCGAATCGGAGCCGAA----GGCAATCGGCCATGGTTTTCCTTAAGGTGGATAT 231
* * * ** **** * * ******* ********************** **
consensus_12116#0 GTCTTTGAATGTGTTGATCTCACCTAGCCAGCTGAGCCCCCAGGGTCTCTTGCTCCGCAA 250
consensus_12116#1 GTCTTGGAATGTGTTGATCTCACCTAGCGAGCTGAGCCCCAAGGGTCTCTTGCTCCGCAA 291
***** ********************** *********** *******************
consensus_12116#0 GGCTGTCATTGTCCGCCTTCTGGAGGATATAGCAAACCGGAAGGCCTCCAAGGATCATGG 310
consensus_12116#1 GGCTGTCATTGTTAGTCTTCTGGAGGAGATAGCAAACAGGAAGGCCTCCAAGGATCATGG 351
************ * *********** ********* **********************
consensus_12116#0 TTACTACATTGCTGTGAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGTGAGCTGAC 370
consensus_12116#1 TTACTACATTGCTGTCAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGCGAGCTGAC 411
*************** *********************************** ********
consensus_12116#0 CGGAGACGTTCTTTTCCCGGTGACGTTCACCTGCATCACGCAGAAGCCTATGAAGGGCGA 430
consensus_12116#1 CGGAGATGTTCTTTTCCCAGTGACATTCACCTGCATCACACAGAAGCCTACGAAGGGCGA 471
****** *********** ***** ************** ********** *********
consensus_12116#0 GGTCTTAGTTGGCTCCGTGGACAAGATCCTCAAGCATGGCATTTTCCTCAAATCTGGACC 490
consensus_12116#1 GATCTTAGTTGGCTCTGTGGATAAGATCCTCAAGCATGGCGTGTTCCTCAAATCTGGACC 531
* ************* ***** ****************** * *****************
consensus_12116#0 GATAGAAAGCATCTTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGA 550
consensus_12116#1 AATAGAAAGCATCTTCCTGTCAGAGAAGACACTGAGCGACTACAAGTACATCGGTGGGGA 591
************** ***** ******** ********* ********* ********
consensus_12116#0 GAACGCGGTGTTCATGAATGAACACTCGAAGCTGGAGAAGGACACCGTCGTGCGCTTCAA 610
consensus_12116#1 GAACCCTATGTTCATGAATGACCACTCGAAGCTGGAGAAGGACACCGCTGTGCGCTTCAA 651
**** * ************* ************************* ***********
consensus_12116#0 GGTCATGGGGTTCCGCTGGATGGAAGCCGATCGCCAGTTCCAGCTCCTTGCTACCCTGGC 670
consensus_12116#1 GGTGATGGGTTTCCGCTGGATGGAAGCTGATCGCCAGTTCCAGATCCTTGCTACCCTGGC 711
*** ***** ***************** *************** ****************
consensus_12116#0 TGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTCTGCTGCACATTTTGC 730
consensus_12116#1 TGGTGACTATCTTGGGCCACTATGAACTGCTTC-----------------CACAGGTTAG 754
*************** ***************** **** **
consensus_12116#0 TACCTTGATGAATGGATTTGAAATGTGTTAGCCTTAACCTGCTGTCTGTAGTTTGGTGTC 790
consensus_12116#1 TGG--TGATGAATGGATCTGAAATGTATTATCTTTAACCTGCTGTCTGTAGTTTGATGTC 812
* ************ ******** *** * ********************** ****
consensus_12116#0 GTGATGACTGATCATACCTGTATCGTATCTGTGATGCTGGTTGTTGATGTAAATGGCATT 850
consensus_12116#1 ATGATGA-TGATGAT--TAGACCAGTAGCTGTGATGCTGGCTGTTGATGTAAGTGACATT 869
****** **** ** * *** ************ *********** ** ****
consensus_12116#0 AGGCCATATGTTTAGCATTTCAGCATGATGAGAATTGTCATGGCTGATGAACCTCTATTT 910
consensus_12116#1 TGGCCCTATGTTTAGCATTTCAGCATGATGCGAATTGTCATGGCCGTTTAAAAAA----- 924
**** ************************ ************* * * **
consensus_12116#0 CCTATGGCTGCTCACCGTTCTACCATGCATATATTTGCTGCCTTCCTTTCTGAGAAAAAA 970
consensus_12116#1 ------------------------------------------------------------
consensus_12116#0 AAAAAAAA 978
consensus_12116#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||