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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1754 fasta sequence
[GTCGACCCGTCGTCGTACTCCCGCCCACCCAGCGCCGCCGCCGCCGCCGCCGTCCTCCCAGGCCGCCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGTTGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCCCCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTGATCTGTGGAAGTAACAAACAGTTCGTTTGTCTGTTTCCCCGTAAAATTCCCCAAGCTGGACCCGCCCCTGGAAGAAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGACCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGCGCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACCTCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGGTGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCTCTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTCTTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCATCTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTGTATGTACACTTGTCCCGCGTTCCAATGCAATGCAATTGCTACTCCAGTTGGGCTAGGGACGACCCTATTCCATCCTTAACTTATGCAAGCTTATTACAGAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAAC-TGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAATGCTGCAGCG]
[+] EMBL AK105660 [GTCGACCCGTCGTCGTACTCCCGCCCACCCAGCGCCGCCGCCGCCGCCGCCGTCCTCCCAGGCCGCCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGTTGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCCCCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTGATCTGTGGAAGTAACAAACAGTTCGTTTGTCTGTTTCCCCGTAAAATTCCCCAAGCTGGACCCGCCCCTGGAAGAAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGACCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGCGCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACCTCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGGTGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCTCTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTCTTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCATCTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCCGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAACAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTGTATGTACACTTGTCCCGCGTTCCAATGCAATGCAATTGCTACTCCAGTTGGGCTAGGGACGACCCTATTCCATCCTTAACTTATGCAAGCTTATTACAGAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAAC TGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAATGCTGCAGCG]
[+] EMBL CB647412 [ AATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCATCTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTTTTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTGTATGTACACTTGTCCCGCGTTCCAATGCAATGCAATTGCTACTCCAGTTGGGCTAGGGACGACCCTATTCCATCCTTAACTTATGCAAGCTTATTACAGAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGC ]
[-] EMBL CB647411 [ AAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTTTTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTGTATGTACACTTGTCCCGCGTTCCAATGCAATGCAATTGCTACTCCAGTTGGGCTAGGGACGACCCTATTCCATCCTTAACTTATGCAAGCTTATTACAGAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAAC TGGCTTTTTTTTTTAAGCTCT ]
[-] EMBL CB651412 [ AAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTGTATGTACACTTGTCCCGCGTTCCAATGCAATGCAATTGCTACTCCAGTTGGGCTAGGGACGACCCTATTCCATCCTTAACTTATGCAAGCTTATTACAGAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAACGTGGCTTTTTTTTT ]
consensusID : consensus_12119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1660 fasta sequence
[TCCCGCCCCCCCCTCTCTCTCACCCTCTCCCCATCCCTCCCCGCCCAACGCCGCCGTCGACCCGTCGTCGTACTCCCGCCCACCCAGCGCCGCCGCCGCCGCCGCCGTCCTCCCAGGCCGCCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGTTGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCCCCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTGCTGGACCCGCCCCTGGAAGAAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGACCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGCGCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACCTCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGGTGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCTCTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTCTTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCATCTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCGCAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAATGCTGCAGCGTGATGT]
[+] EMBL AK100618 [TCCCGCCCCCCCCTCTCTCTCACCCTCTCCCCATCCCTCCCCGCCCAACGCCGCCGTCGACCCGTCGTCGTACTCCCGCCCACCCAGCGCCGCCGCCGCCGCCGCCGTCCTCCCAGGCCGCCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGTTGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCCCCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGTTGCATCCTGCTGGACCCGCCCCTGGAAGAAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGACCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGCGCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACCTCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGGTGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCTCTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTCTTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCATCTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCGCAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAATGCTGCAGCG ]
[+] EMBL CB653451 [ CGCCGTCCTCCCAGGCCGCCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGTTGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCCCCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTGCTGGACCCGCCCCTGGAAGAAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGACCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGCGCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACCTCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGGTGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCTCTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTCTTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGC ]
[+] EMBL CB651411 [ AGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGTTGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCCCCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTGCTGGACCCGCCCCTGGAAGAAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGACCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGCGCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACCTCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGGTGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCTCTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTCTTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGAT ]
[-] EMBL CB653452 [ ACAGCATCTGGGAAATGNATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCATCTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAATGCTGCAGCGTGATGT]
consensusID : consensus_12119#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence
[CCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT]
[+] EMBL CF329543 [CCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT]
consensusID : consensus_12119#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence
[CCATTCCTCCTTGGGGGATTGTAATTCCCCTTGTAATCGGTTTTGGCATCAAATAATCAAAGTATTGCGTTGTTGTTGCATGTACAAATGTAACAGTGTGTGTTTGGTTGAATGGTTCCCTTCATTGTGTAAAACAAAGGCTTTTTTTTTTAAAATTTTTTTCAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF329542 [CCATTCCTCCTTGGGGGATTGTAATTCCCCTTGTAATCGGTTTTGGCATCAAATAATCAAAGTATTGCGTTGTTGTTGCATGTACAAATGTAACAGTGTGTGTTTGGTTGAATGGTTCCCTTCATTGTGTAAAACAAAGGCTTTTTTTTTTAAAATTTTTTTCAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 -------------------------------------------------------GTCGA 5
consensus_12119#1 TCCCGCCCCCCCCTCTCTCTCACCCTCTCCCCATCCCTCCCCGCCCAACGCCGCCGTCGA 60
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 CCCGTCGTCGTACTCCCGCCCACCCAGCGCCGCCGCCGCCGCCGCCGTCCTCCCAGGCCG 65
consensus_12119#1 CCCGTCGTCGTACTCCCGCCCACCCAGCGCCGCCGCCGCCGCCGCCGTCCTCCCAGGCCG 120
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 CCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGT 125
consensus_12119#1 CCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGT 180
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 TGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCC 185
consensus_12119#1 TGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCC 240
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 CCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTGATCTGTGGAAGTAA 245
consensus_12119#1 CCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTG-------------- 286
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 CAAACAGTTCGTTTGTCTGTTTCCCCGTAAAATTCCCCAAGCTGGACCCGCCCCTGGAAG 305
consensus_12119#1 -----------------------------------------CTGGACCCGCCCCTGGAAG 305
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 AAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGA 365
consensus_12119#1 AAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGA 365
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 CCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGC 425
consensus_12119#1 CCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGC 425
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 GCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACC 485
consensus_12119#1 GCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACC 485
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 TCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGG 545
consensus_12119#1 TCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGG 545
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 TGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCT 605
consensus_12119#1 TGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCT 605
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 CTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTC 665
consensus_12119#1 CTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTC 665
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 TTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGG 725
consensus_12119#1 TTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGG 725
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 CAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAG 785
consensus_12119#1 CAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAG 785
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 AGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATC 845
consensus_12119#1 AGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATC 845
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 TGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCAT 905
consensus_12119#1 TGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCAT 905
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 CTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAA 965
consensus_12119#1 CTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAA 965
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 CAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAG 1025
consensus_12119#1 CAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAG 1025
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 CTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAG 1085
consensus_12119#1 CTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAG 1085
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 AGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAG 1145
consensus_12119#1 AGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAG 1145
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 CTGATGCTGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAA 1205
consensus_12119#1 CTGATGCTGTAGCTGCGCAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAA 1205
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 GTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGT 1265
consensus_12119#1 GTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGT 1265
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 TTCCTCCGACCTTGTTGTATGTACACTTGTCCCGCGTTCCAATGCAATGCAATTGCTACT 1325
consensus_12119#1 TTCCTCCGACCTTGTT-------------------------------------------- 1281
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 CCAGTTGGGCTAGGGACGACCCTATTCCATCCTTAACTTATGCAAGCTTATTACAGAACC 1385
consensus_12119#1 --------------------------------------------------------AACC 1285
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 AAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTT 1445
consensus_12119#1 AAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTT 1345
consensus_12119#2 ------------------------------------------------------------
consensus_12119#3 ------------------------------------------------------------
consensus_12119#0 GTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAG 1505
consensus_12119#1 GTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAG 1405
consensus_12119#2 ----------------------------------------------------------CC 2
consensus_12119#3 -----------------------------------------------------------C 1
consensus_12119#0 TAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCC 1565
consensus_12119#1 TAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCC 1465
*
consensus_12119#2 CATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGA 62
consensus_12119#3 CATTCCTCCTTGGGGGATTGTAATTCCCCTTGTAATCGGTTTTGGCATCAAATAATCAAA 61
consensus_12119#0 CATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGA 1625
consensus_12119#1 CATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGA 1525
************** *********** ******************************* *
consensus_12119#2 GTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACT 122
consensus_12119#3 GTATTGCGTTGTTGTTGCATGTACAAATGTAACAGTGTGTGTTTGGTTGAATGGTTCCCT 121
consensus_12119#0 GTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACT 1685
consensus_12119#1 GTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACT 1585
************************* **************** ******* ****** **
consensus_12119#2 TCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAAAAAAAAAAA 182
consensus_12119#3 TCATTGTGTAAAACAAA-GGCTTTTTTTTTTAAAATTTTTTTCAAGGAAAAAAAAAAAAA 180
consensus_12119#0 TCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAAT 1745
consensus_12119#1 TCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAAT 1645
********** * *** *************** * *** *** *** ** * **
consensus_12119#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT 241
consensus_12119#3 AAAAAAAAAAAAAAAAAAAAA-------------------------------------- 201
consensus_12119#0 GCTGCAGCG-------------------------------------------------- 1754
consensus_12119#1 GCTGCAGCGTGATGT-------------------------------------------- 1660
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||