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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 816 fasta sequence
[CCACTCCTCTTCCTCCTCCTCCTCTCTCGCTCTCTCTCTCTCTCTTCCCCTTCCGGCTTCCGCCTCCGCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGGGAGCTGGAGCATCATCGCACGTGACTGGAGAGGGAGGCCCCCCCCCCCCCCCCCCCCGAAGATTTGATTCGAGATGAATGCTCCCGACCGCTACGAACGCTTTGTGGTGCCTGAGGGAACCAAGAAGGTA-TCATATGAGCGGGATACAAAGATTGTGAATGCTGGGTC--ATTCACAATTGAGCG-TGAGGACCACACCA-TT-GGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAA-CGTCCTCTTTGCTGGTTATAAGCTCCCTCATCCCCTTCAGTACAAGATCCTTGTCAGGGTCCATACTGCAAACCAGTCCACCCCTACTCAAGCGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATCTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATACTAGGCC-AACACTCCTTAAAATGC-AGAACCTCTGTTGATGTTAGATCTGATGCCTGAGCA-TTAGTAGAAAAAAAAATGCTACTATGCTGATCAATGAACTCTTTTAAGAAACTTGTTTATGCTTAAACTCGTACAACGCAGTTCATCCTGATGCATTTCTGTTGTCTGTGCTTGGAGCATGCTCTATTAAGACTTGTCATCTCTGAACTGCCATTGCATGAAAAACATTAAAATTGAAGTGCTACACATCGAAGAAAAACTACT]
[+] EMBL CF329958 [CCACTCCTCTTCCTCCTCCTCCTCTCTCGCTCTCTCTCTCTCTCTTCCCCTTCCGGCTTCCGCCTCCGCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGGGAGCTGGAGCA ]
[+] EMBL AK068132 [ CTCTCGCTCTCTCTCTCTCTCTTCCCCTTCCGGCTTCCGCCTCCGCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGGGAGCTGGAGCATCATCGCACGTGACTGGAGAGGGAGGCCCCCCCCCCCCCCCCCCCCGAAGATTTGATTCGAGATGAATGCTCCCGACCGCTACGAACGCTTTGTGGTGCCTGGGGGAACCAAGAAGGTA TCATATGAGCGGGATACAAAGATTGTGAATGCTGGGTC ATTCACAATTGAGCG TGAGGACCACACCA TT GGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAA CGTCCTCTTTGCTGGTTATAAGCTCCCTCATCCCCTTCAGTACAAGATCCTTGTCAGGGTCCATACTGCAAACCAGTCCACCCCTACTCAAGCGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATCTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATACTAGGCC AACACTCCTTAAAATGC AGAACCTCTGTTGATGTTAGATCTGATGCCTGAGCA TTAGTAGAAAAAAAAATGCTACTATGCTGATCAATGAACTCTTTTAAGAAACTTGTTTATGCTTAAACTCGTACAACGCAGTTCATCCTGATGCATTTCTGTTGTCTGTGCTTGGAGCATGCTCTATTAAGACTTGTCATCTCTGAACTGCCATTGCATGAAAAACATTAAAATTGAAGTGCTACACATCGAAGAAAAACTACT]
[+] EMBL AK099622 [ TCTCGCTCTCTCTCTCTCTCTTCCCCTTCCGGCTTCCGCCTCCGCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGGGAGCTGGAGCATCATCGCACGTGACTGGAGAGGGAGG ACCCCCCCCCCCCCCCCCCGAAGATTTGATTCGAGATGAATGCTCCCGACCGCTACGAACGCTTTGTGGTGCCTGAGGGAACCAAGAAGGTA TCATATGAGCGGGATACAAAGATTGTGAATGCTGGGTC ATTCACAATTGAGCG TGAGGACCACACCA TT GGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAA CGTCCTCTTTGCTGGTTATAAGCTCCCTCATCCCCTTCAGTACAAGATCCTTGTCAGGGTCCATACTGCAAACCAGTCCACCCCTACTCAAGCGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATCTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATACTAGGCC AACACTCCTTAAAATGC AGAACCTCTGTTGATGTTAGATCTGATGCCTGAGCA TTAGTAGAAAAAAAAATGCTACTATGCTGATCAATGAACTCTTTTAAGAAACTTGTTTATGCTTAAACTCGTACAACGCAGTTCATCCTGATGCATTTCTGTTGTCTGTGCTTGGAGCATGCTCTATTAAGACTTGTCATCTCTGAACTGCCATTGCATGAAAAACATTAAAATTGAAGTG ]
[+] EMBL CF292147 [ CTCTCTCTCTCTCTCTTCCCCTTCCGGCTTCCGCCTCCGCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGGGAGCTGGAGCATCATCGCACGTGACTGGAG ]
[+] EMBL BE040473 [ GCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGGGAGCTGGAGCATCATCGCACGTGACTGGAGAGGGAGGACCCCCCCCCCCCCCCCCCCNAAGATTNNNTTCNNGATNAATGCTCCCCACCGCTACTAACACTTTTTGGTGCCTGAGGGAACCAATAAGGTT TCATATGAGCGGGATACAAAGATTGTGAATGCTGGGCC ATTCACAATTGAGCG TGAGGACCACACCA TT GGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAA CGTCCTCTTTGCTGTGTATAAACTCCCTAATCCCCTTCAGAAC ]
[-] EMBL CF292146 [ CCCGACCGCTACGAACGCTTTGTGGTGCCTGAGGGAACCAAGAAGGTATTCATATGAGCGGGATACAAAGATTGTGAATGCTGGGTC ATTCACAATTGAGCG TGAGGACCACACCA TT GGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAANCGTCCTCTTTGCTGGTTATAAGCTCCCCCATCCCCTTCAGTACAAGATCCTTGTCAGGGTCCATACTGCAAACCAGTCCACCCCTACTCAAGCGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATTTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATACTAGGCC AACACTCCTTAAAATGC AGAACCTCTGTTGATGTTAGATTTGATGCCTGAGCA TTAGTAGAAAAAAAAATGCTACTATGCTGATCAATGAACTCTTTTAAGAAAaaaaa ]
[-] EMBL BI305680 [ AATGCTGGGTC ATTCACAATTGAGCG TGAGGACCCCCCCA TT GGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAA CGTCCTTTTTGCTGGTTATAAGCTCCCTCATCCCCTTCAGGACAAGATCCTTGTCAGGGTCCATATTGCAAACCAGTCCCCCCCTACTCAAGGGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATTTCAAGCAAGCTTTTGAGGATGAAAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATATTAGGCC AACACTCCTTAAAATGC AGAACCTTTGTTGATGTTAGATTTGATGCCTGAGCA TTAGTAG AAAAAAAATGCTACTATGCTGATCAATGAACTTTTTTAAGAAACTTGTTTATGCTTAAACTTGTACAACGCAGTTCATCCTGATGCATTTTTGTTGTCTGGGCTTGGAGCATGCTTTATTAAAACTTGTCATTTTTGAACTGCCCTTGCATGAAAAACATTAAAATTGAAGTGCTACACATCGAAAAAAAACTACT]
[+] EMBL BI796006 [ GGTCCAATTCACAATTGAGCGTTGAGGACCACACCAGTTGGGCAACATCCTCCGCATGCAGCTCCACA GGACCCAAA CGTCCTCTTTGCTGGTTATAAGCTCCCTCATCCCCTTCAGTACAAGATCCTTGTCAGGGTCCATACTGCAAACCAGTCCACCCCTACTCAAGCGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATCTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATACTAGGCCAAACACTCCTTAAAATGCAAGAACCTCTGTTGATGTTAGATCTGATGCCTGAGCACTTAGTAG AAAAAAAATGCTACTATGCTGATC ATGAACTCTTTTAAGAAACTTGTTTATGCTTAAACTCGTAC ACGCAGTTCATCCTGATGCATTTCTGTTGTCTGTGCTTGGAGCATGCTCTATTAAaaaa ]
[+] EMBL CF331691 [ AGCGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATCTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATACTAGGCC AACACTCCTTAAAATGC AGAACCTCTGTTGATGTTAGATCTGATGCCTGAGCA TTAGTAGAAAAAAAAATGCTACTATGCTGATCAATGAACTCTTTTAAGAAACTTGTTTATGCTTAAACTCGTACAACGCAGTTCATCCTGATG ATTTCTGTTGTCTGTGCTTGGAGCATGCTCTATTAAGACTTGTCATCTCTGAACTGCCATTGCATGAAAAACATTAA ]
consensusID : consensus_12120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence
[TTTTAGCCAAGGGGCTTGAGATTTTCAACCAAGTTTTTGAGAATGAAAAGATCCGCTACGAGGAAAGGCTTAAGCAGGGATATTAGGCCACCCCTCCTTAAAATGCAGACCCTCTGTTGATGTTAGATTTGAGGCCTGAGCATTAGTAAAAAAAAAAAGGCTATTATGTTGATCAATGAATTTTTTTAAAAAACTTGTTTAGGTTTAAATTGGTACAACGCAGTTCATCCTAAGGCATTTTTGTGGTTTGGGCTTGGAGCATGCTTTATTAAAACTTGTCATTTTTGAACTGCCATGGCATGAAAACCATTAAAATTGAAGTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF331692 [TTTTAGCCAAGGGGCTTGAGATTTTCAACCAAGTTTTTGAGAATGAAAAGATCCGCTACGAGGAAAGGCTTAAGCAGGGATATTAGGCCACCCCTCCTTAAAATGCAGACCCTCTGTTGATGTTAGATTTGAGGCCTGAGCATTAGTAAAAAAAAAAAGGCTATTATGTTGATCAATGAATTTTTTTAAAAAACTTGTTTAGGTTTAAATTGGTACAACGCAGTTCATCCTAAGGCATTTTTGTGGTTTGGGCTTGGAGCATGCTTTATTAAAACTTGTCATTTTTGAACTGCCATGGCATGAAAACCATTAAAATTGAAGTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12120#0 CCACTCCTCTTCCTCCTCCTCCTCTCTCGCTCTCTCTCTCTCTCTTCCCCTTCCGGCTTC 60
consensus_12120#1 ------------------------------------------------------------
consensus_12120#0 CGCCTCCGCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGG 120
consensus_12120#1 ------------------------------------------------------------
consensus_12120#0 GAGCTGGAGCATCATCGCACGTGACTGGAGAGGGAGGCCCCCCCCCCCCCCCCCCCCGAA 180
consensus_12120#1 ------------------------------------------------------------
consensus_12120#0 GATTTGATTCGAGATGAATGCTCCCGACCGCTACGAACGCTTTGTGGTGCCTGAGGGAAC 240
consensus_12120#1 ------------------------------------------------------------
consensus_12120#0 CAAGAAGGTATCATATGAGCGGGATACAAAGATTGTGAATGCTGGGTCATTCACAATTGA 300
consensus_12120#1 ------------------------------------------------------------
consensus_12120#0 GCGTGAGGACCACACCATTGGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAACGT 360
consensus_12120#1 ------------------------------------------------------------
consensus_12120#0 CCTCTTTGCTGGTTATAAGCTCCCTCATCCCCTTCAGTACAAGATCCTTGTCAGGGTCCA 420
consensus_12120#1 ------------------------------------------------------------
consensus_12120#0 TACTGCAAACCAGTCCACCCCTACTCAAGCGTACACACAGGCAATCAATGATTTAGACAA 480
consensus_12120#1 --------------------------------------------------TTTTAGCCAA 10
***** ***
consensus_12120#0 GGAGCTTGAGAATCTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCC 540
consensus_12120#1 GGGGCTTGAGATTTTCAACCAAGTTTTTGAGAATGAAAAGATCCGCTACGAGGAAAGGCT 70
** ******** * **** **** ******* **** **********************
consensus_12120#0 TAAGCAGGGATACTAGGCCAACACTCCTTAAAATGCAGAACCTCTGTTGATGTTAGATCT 600
consensus_12120#1 TAAGCAGGGATATTAGGCCACCCCTCCTTAAAATGCAGACCCTCTGTTGATGTTAGATTT 130
************ ******* * **************** ****************** *
consensus_12120#0 GATGCCTGAGCATTAGTAGAAAAAAAAATGCTACTATGCTGATCAATGAACTCTTTTAAG 660
consensus_12120#1 GAGGCCTGAGCATTAGTAAAAAAAAAAAGGCTATTATGTTGATCAATGAATTTTTTTAAA 190
** *************** ********* **** **** *********** * ******
consensus_12120#0 AAACTTGTTTATGCTTAAACTCGTACAACGCAGTTCATCCTGATGCATTTCTGTTGTCTG 720
consensus_12120#1 AAACTTGTTTAGGTTTAAATTGGTACAACGCAGTTCATCCTAAGGCATTTTTGTGGTTTG 250
*********** * ***** * ******************* * ****** *** ** **
consensus_12120#0 TGCTTGGAGCATGCTCTATTAAGACTTGTCATCTCTGAACTGCCATTGCATGAAAAACAT 780
consensus_12120#1 GGCTTGGAGCATGCTTTATTAAAACTTGTCATTTTTGAACTGCCATGGCATGAAAACCAT 310
************** ****** ********* * *********** ********* ***
consensus_12120#0 TAAAATTGAAGTGCTACACATCGAAGAAAAACTACT----------------- 816
consensus_12120#1 TAAAATTGAAGTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 363
************* * ** * ** ***** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||