These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 816 fasta sequence [CCACTCCTCTTCCTCCTCCTCCTCTCTCGCTCTCTCTCTCTCTCTTCCCCTTCCGGCTTCCGCCTCCGCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGGGAGCTGGAGCATCATCGCACGTGACTGGAGAGGGAGGCCCCCCCCCCCCCCCCCCCCGAAGATTTGATTCGAGATGAATGCTCCCGACCGCTACGAACGCTTTGTGGTGCCTGAGGGAACCAAGAAGGTA-TCATATGAGCGGGATACAAAGATTGTGAATGCTGGGTC--ATTCACAATTGAGCG-TGAGGACCACACCA-TT-GGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAA-CGTCCTCTTTGCTGGTTATAAGCTCCCTCATCCCCTTCAGTACAAGATCCTTGTCAGGGTCCATACTGCAAACCAGTCCACCCCTACTCAAGCGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATCTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATACTAGGCC-AACACTCCTTAAAATGC-AGAACCTCTGTTGATGTTAGATCTGATGCCTGAGCA-TTAGTAGAAAAAAAAATGCTACTATGCTGATCAATGAACTCTTTTAAGAAACTTGTTTATGCTTAAACTCGTACAACGCAGTTCATCCTGATGCATTTCTGTTGTCTGTGCTTGGAGCATGCTCTATTAAGACTTGTCATCTCTGAACTGCCATTGCATGAAAAACATTAAAATTGAAGTGCTACACATCGAAGAAAAACTACT] [+] EMBL CF329958 [CCACTCCTCTTCCTCCTCCTCCTCTCTCGCTCTCTCTCTCTCTCTTCCCCTTCCGGCTTCCGCCTCCGCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGGGAGCTGGAGCA ] [+] EMBL AK068132 [ CTCTCGCTCTCTCTCTCTCTCTTCCCCTTCCGGCTTCCGCCTCCGCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGGGAGCTGGAGCATCATCGCACGTGACTGGAGAGGGAGGCCCCCCCCCCCCCCCCCCCCGAAGATTTGATTCGAGATGAATGCTCCCGACCGCTACGAACGCTTTGTGGTGCCTGGGGGAACCAAGAAGGTA TCATATGAGCGGGATACAAAGATTGTGAATGCTGGGTC ATTCACAATTGAGCG TGAGGACCACACCA TT GGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAA CGTCCTCTTTGCTGGTTATAAGCTCCCTCATCCCCTTCAGTACAAGATCCTTGTCAGGGTCCATACTGCAAACCAGTCCACCCCTACTCAAGCGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATCTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATACTAGGCC AACACTCCTTAAAATGC AGAACCTCTGTTGATGTTAGATCTGATGCCTGAGCA TTAGTAGAAAAAAAAATGCTACTATGCTGATCAATGAACTCTTTTAAGAAACTTGTTTATGCTTAAACTCGTACAACGCAGTTCATCCTGATGCATTTCTGTTGTCTGTGCTTGGAGCATGCTCTATTAAGACTTGTCATCTCTGAACTGCCATTGCATGAAAAACATTAAAATTGAAGTGCTACACATCGAAGAAAAACTACT] [+] EMBL AK099622 [ TCTCGCTCTCTCTCTCTCTCTTCCCCTTCCGGCTTCCGCCTCCGCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGGGAGCTGGAGCATCATCGCACGTGACTGGAGAGGGAGG ACCCCCCCCCCCCCCCCCCGAAGATTTGATTCGAGATGAATGCTCCCGACCGCTACGAACGCTTTGTGGTGCCTGAGGGAACCAAGAAGGTA TCATATGAGCGGGATACAAAGATTGTGAATGCTGGGTC ATTCACAATTGAGCG TGAGGACCACACCA TT GGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAA CGTCCTCTTTGCTGGTTATAAGCTCCCTCATCCCCTTCAGTACAAGATCCTTGTCAGGGTCCATACTGCAAACCAGTCCACCCCTACTCAAGCGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATCTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATACTAGGCC AACACTCCTTAAAATGC AGAACCTCTGTTGATGTTAGATCTGATGCCTGAGCA TTAGTAGAAAAAAAAATGCTACTATGCTGATCAATGAACTCTTTTAAGAAACTTGTTTATGCTTAAACTCGTACAACGCAGTTCATCCTGATGCATTTCTGTTGTCTGTGCTTGGAGCATGCTCTATTAAGACTTGTCATCTCTGAACTGCCATTGCATGAAAAACATTAAAATTGAAGTG ] [+] EMBL CF292147 [ CTCTCTCTCTCTCTCTTCCCCTTCCGGCTTCCGCCTCCGCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGGGAGCTGGAGCATCATCGCACGTGACTGGAG ] [+] EMBL BE040473 [ GCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGGGAGCTGGAGCATCATCGCACGTGACTGGAGAGGGAGGACCCCCCCCCCCCCCCCCCCNAAGATTNNNTTCNNGATNAATGCTCCCCACCGCTACTAACACTTTTTGGTGCCTGAGGGAACCAATAAGGTT TCATATGAGCGGGATACAAAGATTGTGAATGCTGGGCC ATTCACAATTGAGCG TGAGGACCACACCA TT GGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAA CGTCCTCTTTGCTGTGTATAAACTCCCTAATCCCCTTCAGAAC ] [-] EMBL CF292146 [ CCCGACCGCTACGAACGCTTTGTGGTGCCTGAGGGAACCAAGAAGGTATTCATATGAGCGGGATACAAAGATTGTGAATGCTGGGTC ATTCACAATTGAGCG TGAGGACCACACCA TT GGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAANCGTCCTCTTTGCTGGTTATAAGCTCCCCCATCCCCTTCAGTACAAGATCCTTGTCAGGGTCCATACTGCAAACCAGTCCACCCCTACTCAAGCGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATTTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATACTAGGCC AACACTCCTTAAAATGC AGAACCTCTGTTGATGTTAGATTTGATGCCTGAGCA TTAGTAGAAAAAAAAATGCTACTATGCTGATCAATGAACTCTTTTAAGAAAaaaaa ] [-] EMBL BI305680 [ AATGCTGGGTC ATTCACAATTGAGCG TGAGGACCCCCCCA TT GGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAA CGTCCTTTTTGCTGGTTATAAGCTCCCTCATCCCCTTCAGGACAAGATCCTTGTCAGGGTCCATATTGCAAACCAGTCCCCCCCTACTCAAGGGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATTTCAAGCAAGCTTTTGAGGATGAAAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATATTAGGCC AACACTCCTTAAAATGC AGAACCTTTGTTGATGTTAGATTTGATGCCTGAGCA TTAGTAG AAAAAAAATGCTACTATGCTGATCAATGAACTTTTTTAAGAAACTTGTTTATGCTTAAACTTGTACAACGCAGTTCATCCTGATGCATTTTTGTTGTCTGGGCTTGGAGCATGCTTTATTAAAACTTGTCATTTTTGAACTGCCCTTGCATGAAAAACATTAAAATTGAAGTGCTACACATCGAAAAAAAACTACT] [+] EMBL BI796006 [ GGTCCAATTCACAATTGAGCGTTGAGGACCACACCAGTTGGGCAACATCCTCCGCATGCAGCTCCACA GGACCCAAA CGTCCTCTTTGCTGGTTATAAGCTCCCTCATCCCCTTCAGTACAAGATCCTTGTCAGGGTCCATACTGCAAACCAGTCCACCCCTACTCAAGCGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATCTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATACTAGGCCAAACACTCCTTAAAATGCAAGAACCTCTGTTGATGTTAGATCTGATGCCTGAGCACTTAGTAG AAAAAAAATGCTACTATGCTGATC ATGAACTCTTTTAAGAAACTTGTTTATGCTTAAACTCGTAC ACGCAGTTCATCCTGATGCATTTCTGTTGTCTGTGCTTGGAGCATGCTCTATTAAaaaa ] [+] EMBL CF331691 [ AGCGTACACACAGGCAATCAATGATTTAGACAAGGAGCTTGAGAATCTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCCTAAGCAGGGATACTAGGCC AACACTCCTTAAAATGC AGAACCTCTGTTGATGTTAGATCTGATGCCTGAGCA TTAGTAGAAAAAAAAATGCTACTATGCTGATCAATGAACTCTTTTAAGAAACTTGTTTATGCTTAAACTCGTACAACGCAGTTCATCCTGATG ATTTCTGTTGTCTGTGCTTGGAGCATGCTCTATTAAGACTTGTCATCTCTGAACTGCCATTGCATGAAAAACATTAA ] consensusID : consensus_12120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [TTTTAGCCAAGGGGCTTGAGATTTTCAACCAAGTTTTTGAGAATGAAAAGATCCGCTACGAGGAAAGGCTTAAGCAGGGATATTAGGCCACCCCTCCTTAAAATGCAGACCCTCTGTTGATGTTAGATTTGAGGCCTGAGCATTAGTAAAAAAAAAAAGGCTATTATGTTGATCAATGAATTTTTTTAAAAAACTTGTTTAGGTTTAAATTGGTACAACGCAGTTCATCCTAAGGCATTTTTGTGGTTTGGGCTTGGAGCATGCTTTATTAAAACTTGTCATTTTTGAACTGCCATGGCATGAAAACCATTAAAATTGAAGTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF331692 [TTTTAGCCAAGGGGCTTGAGATTTTCAACCAAGTTTTTGAGAATGAAAAGATCCGCTACGAGGAAAGGCTTAAGCAGGGATATTAGGCCACCCCTCCTTAAAATGCAGACCCTCTGTTGATGTTAGATTTGAGGCCTGAGCATTAGTAAAAAAAAAAAGGCTATTATGTTGATCAATGAATTTTTTTAAAAAACTTGTTTAGGTTTAAATTGGTACAACGCAGTTCATCCTAAGGCATTTTTGTGGTTTGGGCTTGGAGCATGCTTTATTAAAACTTGTCATTTTTGAACTGCCATGGCATGAAAACCATTAAAATTGAAGTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12120#0 CCACTCCTCTTCCTCCTCCTCCTCTCTCGCTCTCTCTCTCTCTCTTCCCCTTCCGGCTTC 60 consensus_12120#1 ------------------------------------------------------------ consensus_12120#0 CGCCTCCGCGCCTCGACGACCAGGGTAGCTCGGCCGGCGACTCCGCGAGCGGCGGGGAGG 120 consensus_12120#1 ------------------------------------------------------------ consensus_12120#0 GAGCTGGAGCATCATCGCACGTGACTGGAGAGGGAGGCCCCCCCCCCCCCCCCCCCCGAA 180 consensus_12120#1 ------------------------------------------------------------ consensus_12120#0 GATTTGATTCGAGATGAATGCTCCCGACCGCTACGAACGCTTTGTGGTGCCTGAGGGAAC 240 consensus_12120#1 ------------------------------------------------------------ consensus_12120#0 CAAGAAGGTATCATATGAGCGGGATACAAAGATTGTGAATGCTGGGTCATTCACAATTGA 300 consensus_12120#1 ------------------------------------------------------------ consensus_12120#0 GCGTGAGGACCACACCATTGGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAACGT 360 consensus_12120#1 ------------------------------------------------------------ consensus_12120#0 CCTCTTTGCTGGTTATAAGCTCCCTCATCCCCTTCAGTACAAGATCCTTGTCAGGGTCCA 420 consensus_12120#1 ------------------------------------------------------------ consensus_12120#0 TACTGCAAACCAGTCCACCCCTACTCAAGCGTACACACAGGCAATCAATGATTTAGACAA 480 consensus_12120#1 --------------------------------------------------TTTTAGCCAA 10 ***** *** consensus_12120#0 GGAGCTTGAGAATCTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCC 540 consensus_12120#1 GGGGCTTGAGATTTTCAACCAAGTTTTTGAGAATGAAAAGATCCGCTACGAGGAAAGGCT 70 ** ******** * **** **** ******* **** ********************** consensus_12120#0 TAAGCAGGGATACTAGGCCAACACTCCTTAAAATGCAGAACCTCTGTTGATGTTAGATCT 600 consensus_12120#1 TAAGCAGGGATATTAGGCCACCCCTCCTTAAAATGCAGACCCTCTGTTGATGTTAGATTT 130 ************ ******* * **************** ****************** * consensus_12120#0 GATGCCTGAGCATTAGTAGAAAAAAAAATGCTACTATGCTGATCAATGAACTCTTTTAAG 660 consensus_12120#1 GAGGCCTGAGCATTAGTAAAAAAAAAAAGGCTATTATGTTGATCAATGAATTTTTTTAAA 190 ** *************** ********* **** **** *********** * ****** consensus_12120#0 AAACTTGTTTATGCTTAAACTCGTACAACGCAGTTCATCCTGATGCATTTCTGTTGTCTG 720 consensus_12120#1 AAACTTGTTTAGGTTTAAATTGGTACAACGCAGTTCATCCTAAGGCATTTTTGTGGTTTG 250 *********** * ***** * ******************* * ****** *** ** ** consensus_12120#0 TGCTTGGAGCATGCTCTATTAAGACTTGTCATCTCTGAACTGCCATTGCATGAAAAACAT 780 consensus_12120#1 GGCTTGGAGCATGCTTTATTAAAACTTGTCATTTTTGAACTGCCATGGCATGAAAACCAT 310 ************** ****** ********* * *********** ********* *** consensus_12120#0 TAAAATTGAAGTGCTACACATCGAAGAAAAACTACT----------------- 816 consensus_12120#1 TAAAATTGAAGTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 363 ************* * ** * ** ***** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||