These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12141#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1516 fasta sequence [TTTCTTTCCTCGTTGGATCCAAAGCTCCTCCTCCTCCTCGCCTCGCGCTCCTCGTCCCTTCTCTCGTCCCATCTCTCATCTCATCTCTTGGTAGTTGCCAGTTGGGACTTGGGAGAGAGAGGAGCAGGAGGCAGGAGCAAGAGGAGGGCAAGATCGATCAAGATCAACATGTCCAACAACAAGGTGCTGACCCTGGAGGAGGTCTCCAAGCACAACACCAAGGACGATTGCTGGCTCATCATCGGCGGCAAGGTCTTCTCCCTTTTCTCTTCTCTTCTCTTTTCTTTTGATTAGTATGACACACGGTCTTGCTGGGAACTTTTAGGGACAAACTTTTCATCACTGTGCGGATATGGCTTTCCAGATAGGATAGGATAGCAAACATCCCTCATAAATTAGCCTATCCTGACCTTAATTTTTGTTGAGAATCTCCTACTGCACATTTTTTTTTCCTGTAATGTTCCTGAACATCTTTTCTTAACCAGTCATTTTCATGGAGCCTATATAAGAATGTACCTCACTAGTCCTGGTATAAATATTTTGTGGTTTAATGCGAGAAACTGTTCTTTGTAATCTAAATGTGCAGCTCTTGTTTCATCTTTTATTCCATAGGATTCACAATTCTGTTGATATGTCAAACGCTAAAGAATAATGCAAGATCTTTTACTTCATAGAGCCAAGGAAAAATCAGTTTTGCTTACTTCTCTATTTCCAGTTCAATCAGATGAACAAGCCTGTTTAAAATATGCTCAGAACTTTAGGGAGCTTATATGTTCTCGTGTAGTATATGTCAAGAAGCTATTTTGACTCTGTGAACATGATGTTGGCTGATCAAAAGATATGTATTTTTTCAACAAACTGTTCTATAAGGGAGGTTGCTAGGGTCATTTGCTCATTTTTATACACTGAAATGTGCTTGGTTATTGTTGCTTTTATATTGACGAGGCCTTATATGGTGAAAAAAAAATCCCCTTTACACAAATCAAACTCATAGAAGTATTTGTTTTGCTAC-GGCAAGGTGTACAATGTGACCAAGTTTTTGGAGGATCA-CCCTGGAGGTGATGATGTCTTGTTGTCTTCGACTGCCAAGGATGCTACCGACGACTTCGAAGATGTGGGGCACAGCA-CCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA-GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGCTGTAAGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTGATCATATTTT-CCATGGTAAAAAAAAA] [+] EMBL CB623283 [TTTCTTTCCTCGTTGGATCCAAAGCTCCTCCTCCTCCTCGCCTCGCGCTCCTCGTCCCTTCTCTCGTCCCATCTCTCATCTCATCTCTTGGTAGTTGCCAGTTGGGACTTGGGAGAGAGAGGAGCAGGAGGCAGGAGCAAGAGGAGGGCAAGATCGATCAAGATCAACATGTCCAACAACAAGGTGCTGACCCTGGAGGAGGTCTCCAAGCACAACACCAAGGACGATTGCTGGCTCATCATCGGCGGCAAGGTCTTCTCCCTTTTCTCTTCTCTTCTCTTTTCTTTTGATTAGTATGACACACGGTCTTGCTGGGAACTTTTAGGGACAAACTTTTCATCACTGTGCGGATATGGCTTTCCAGATAGGATAGGATAGCAAACATCCCTCATAAATTAGCCTATCCTGACCTTAATTTTTGTTGAGAATCTCCTACTGCACATTTTTTTTTCCTGTAATGTTCCTGAACATCTTTTCTTAACCAGTCATTTTCATGGAGCCTATATAAGAATGTACCTCACTAGTCCTGGTATAAATATTTTGTGGTTTAATGCGAGAAACTGTTCTTTGTAATCTAAATGTGCAGCTCTTGTTTCATCTTTTATTCCATAGGATTCACAATTCTGTTGATATGTCAAACGCTAAAGAATAATGCAAGATCTTTTACTTCATAGAGCCAAGGAAAAATCAGTTTTGCTTACTTCTCTATTTCCAGTTCAATCAGATGAACAAGCCTGTTTAAAATATGCTCAGAACTTTAGGGAGCTTATATGTTCTCGTGTAGTATATGTCAAGAAGCTATTTTGACTCTGTGAACATG ] [-] EMBL CB623284 [ GGAAAAATCAGTTTTGCTTACTTCTCTATTTCCAGTTCAATCAGATGAACAAGCCTGTTTAAAATATGCTCAGAACTTTAGGGAGCTTATATGTTCTCGTGTAGTATATGTCAAGAAGCTATTTTGACTCTGTGAACATGATGTTGGCTGATCAAAAGATATGTATTTTTTCAACAAACTGTTCTATAAGGGAGGTTGCTAGGGTCATTTGCTCATTTTTATACACTGAAATGTGCTTGGTTATTGTTGCTTTTATATTGACGAGGCCTTATATGGTGAAAAAAAAATCCCCTTTACACAAATCAAACTCATAGAAGTATTTGTTTTGCTACTTGC AGGTGTACAATGTGACCAAGTTTTTGGAGGATCA CCCTGGAGGTGATGATGTCTTGTTGTCTTCGACTGCCAAGGATGCTACCGACGACTTCGAAGATGTGGGGCACAGCA CCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGCTGTAAGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTAC CATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATA ] [-] EMBL CF311012 [ gC GGCAAGGTGTACAATGTGACCAAGTTTTTGGAGGATCA CCCTGGAGGTGATGATGTCTTGTTGTCTTCGACTGCCAAGGATGCTACCGACGACTTCGGAGATGTGGGGCACAGCA CCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGCTGTAAGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTGATCATATTTT CCATGGTAAAAAAAAA] [-] EMBL CF278982 [ GGCAAGGTGTACAATGTGACCAAGTTTTTGGAGGATCA CCCTGGAGGTGATGATGTCTTGTTGTCTTCGACTGCCAAGGATGCTACCGACGACTTCGAAGATGTGGGGCACAGCA CCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGTCGCAACCACGATACCCACCAAGGTGAATGTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTACT AANGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAATAAATCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTAATCATATTTT CCATGGTAAAAAA ] [-] EMBL CF282009 [ GGCAAGGTGTACAATGTGACCAAGTTTTTGGAGGATCACCCCTGGAGGTGATGATGTCTTGTTGTCTTCGACTGCCAAGGATGCTACCGACGACTTTGAAGATGTGGGGCACAGCACCCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGCTGTAAGGATTTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAAAAAAAaaaaaaaa ] [+] EMBL BI797472 [ AGTTTTTGGAGGATCA CCTGGAGGTGATGATGTCTTGTTGTCTTCGACTGCCAAGGATGCTACCGACGACTTCGAAGATGTGGGGCACAGCA CCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGCTGTAAGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTC AAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTCAAATGTGACTAAATCCAATGGATATTTGATCATATTTTCCCATGGTAAAAA ] [+] EMBL AU166181 [ TGTCTTCGACTGCCAAGGATGCTACCGACGACTTCGAAGATGTGGGGCACAGCA CCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGCTGTAAGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTGATCATATTTT CCATGGTAAAAA ] [+] EMBL AU095577 [ GAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTNGCGATATTGGGATTGGCTGTTGCTGTAAGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTGATCATATTTT CCATGGTAAAAAA ] consensusID : consensus_12141#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [TGAAGTACACGCCCCCGAAGCAAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGTCTGTAAGGATCTACACCATAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTGATCAAAAAAAAAAA] [+] EMBL BI807136 [TGAAGTACACGCCCCCGAAGCAAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGTCTGTAAGGATCTACACCATAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTGATCAAAAAAAAAAA] consensusID : consensus_12141#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence [TCGCCTCGGCTCCTCGTCCCTTCTCTCGTCCCATCTCTCATCTCATCTCTTGGTAGTTGCCAGTTGGGACTTGGGAGAGAGAGGAGCAGGAGGCAGGAGCAAGAGGAGGGCAAGATCGATCAAGATCAACATNTCCAACAACAAGGTNCTGACCCTGGAGGAGGTCTCCAAGCACAACACCAAGGACGATTGCTGGCTCATCATCGGCGGCAAGGTNTACAATGTNA] [+] EMBL C27590 [TCGCCTCGGCTCCTCGTCCCTTCTCTCGTCCCATCTCTCATCTCATCTCTTGGTAGTTGCCAGTTGGGACTTGGGAGAGAGAGGAGCAGGAGGCAGGAGCAAGAGGAGGGCAAGATCGATCAAGATCAACATNTCCAACAACAAGGTNCTGACCCTGGAGGAGGTCTCCAAGCACAACACCAAGGACGATTGCTGGCTCATCATCGGCGGCAAGGTNTACAATGTNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12141#0 TTTCTTTCCTCGTTGGATCCAAAGCTCCTCCTCCTCCTCGCCTCGCGCTCCTCGTCCCTT 60 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 CTCTCGTCCCATCTCTCATCTCATCTCTTGGTAGTTGCCAGTTGGGACTTGGGAGAGAGA 120 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 GGAGCAGGAGGCAGGAGCAAGAGGAGGGCAAGATCGATCAAGATCAACATGTCCAACAAC 180 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 AAGGTGCTGACCCTGGAGGAGGTCTCCAAGCACAACACCAAGGACGATTGCTGGCTCATC 240 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 ATCGGCGGCAAGGTCTTCTCCCTTTTCTCTTCTCTTCTCTTTTCTTTTGATTAGTATGAC 300 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 ACACGGTCTTGCTGGGAACTTTTAGGGACAAACTTTTCATCACTGTGCGGATATGGCTTT 360 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 CCAGATAGGATAGGATAGCAAACATCCCTCATAAATTAGCCTATCCTGACCTTAATTTTT 420 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 GTTGAGAATCTCCTACTGCACATTTTTTTTTCCTGTAATGTTCCTGAACATCTTTTCTTA 480 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 ACCAGTCATTTTCATGGAGCCTATATAAGAATGTACCTCACTAGTCCTGGTATAAATATT 540 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 TTGTGGTTTAATGCGAGAAACTGTTCTTTGTAATCTAAATGTGCAGCTCTTGTTTCATCT 600 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 TTTATTCCATAGGATTCACAATTCTGTTGATATGTCAAACGCTAAAGAATAATGCAAGAT 660 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 CTTTTACTTCATAGAGCCAAGGAAAAATCAGTTTTGCTTACTTCTCTATTTCCAGTTCAA 720 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 TCAGATGAACAAGCCTGTTTAAAATATGCTCAGAACTTTAGGGAGCTTATATGTTCTCGT 780 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 GTAGTATATGTCAAGAAGCTATTTTGACTCTGTGAACATGATGTTGGCTGATCAAAAGAT 840 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 ATGTATTTTTTCAACAAACTGTTCTATAAGGGAGGTTGCTAGGGTCATTTGCTCATTTTT 900 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 ATACACTGAAATGTGCTTGGTTATTGTTGCTTTTATATTGACGAGGCCTTATATGGTGAA 960 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 AAAAAAATCCCCTTTACACAAATCAAACTCATAGAAGTATTTGTTTTGCTACGGCAAGGT 1020 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 GTACAATGTGACCAAGTTTTTGGAGGATCACCCTGGAGGTGATGATGTCTTGTTGTCTTC 1080 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 GACTGCCAAGGATGCTACCGACGACTTCGAAGATGTGGGGCACAGCACCACTGCTCGGGC 1140 consensus_12141#1 ------------------------------------------------------------ consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 GATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA 1200 consensus_12141#1 --------------------------------------------------------TGAA 4 consensus_12141#2 ------------------------------------------------------------ consensus_12141#0 GTACACGCCCCCGAAGCAA-CCACACTACAACCAGGATAAGACACCAGAGTTCATCATCA 1259 consensus_12141#1 GTACACGCCCCCGAAGCAAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCA 64 consensus_12141#2 -----------------------------------------TCGCCTCGGCTCCTCGTCC 19 * ** * ** ** ** consensus_12141#0 AGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGA-TTGGCTGTTG-CTGTAAGGAT 1317 consensus_12141#1 AGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGA-TTGGCTGTTGTCTGTAAGGAT 123 consensus_12141#2 C--TTCTCTCGTCCCATCTCTCATCTCATCTCTTGGTAGTTGCCAGTTGGGACTTGGGAG 77 * *** ** * * * * **** * *** * **** * *** consensus_12141#0 CTACACCA-AGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTT 1376 consensus_12141#1 CTACACCATAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTT 183 consensus_12141#2 AGAGAGGA--GCAGGAGGCAGGAGCAAGAGGAGGGCAAGATCGATCAAGATCAACATNTC 135 * * * * *** * * * * ** * *** **** * * consensus_12141#0 -AATAAGTTAGTGAGGATCC--GAGGATTGCGTATTTTGTACCAGCATGGTCTGTCAT-- 1431 consensus_12141#1 -AATAAGTTAGTGAGGATCC--GAGGATTGCGTATTTTGTACCAGCATGGTCTGTCAT-- 238 consensus_12141#2 CAACAACAAGGTNCTGACCCTGGAGGAGGTCTCCAAGCACAACACCAAGGACGATTGCTG 195 ** ** ** ** ** ***** * * ** ** ** * * consensus_12141#0 GTTTGTTAT-GGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTG 1490 consensus_12141#1 GTTTGTTAT-GGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTG 297 consensus_12141#2 GCTCATCATCGGCGGCAAGGTNTACAATGTNA---------------------------- 227 * * * ** ** *** * * ** * consensus_12141#0 ATCATATTTTCCATGGTAAAAAAAAA 1516 consensus_12141#1 ATCAAA-----------AAAAAAAA- 311 consensus_12141#2 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||