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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1015 fasta sequence
[CAGCGAGAAGGTTTTAAGGGTAGGCGGCGCCGCGGCGGAGGGGGGCTCAGCTCGAGGAGGACGACGGAAACCTTCCCGGCGGCGCGCGAGTCTCGCGGGGGGAGGAGAGCGATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGCGTGGAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC-TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA-TCGTTGAGCCGGCAAAATGTCAGAAG-TGTGGGAAACGGAACG-TCCGACAGGCGTA-TCACAACGTCTGCACGGC-TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC-TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG-AGGGAGAGGCGCACACTTCTTCGCCTTAT-GAACAAAGGTGGCGGGGAGAGCGGA-CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTGTGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGCGGTTTTTCCGGTTTAAAAANAAAAAAAAAANNAANNNNANNNAANAANAAAAAAAAAAAAAAAAAANNAANNNNNNNNNAACCTTGGGGGGGGGCCCGGCCCCAATTCCCCCCTTAA]
[+] EMBL AK099449 [CAGCGAGAAGGTTTTAAGGGTAGGCGGCGCCGCGGCGGAGGGGGGCTCAGCTCGAGGAGGACGACGGAAACCTTCCCGGCGGCGCGCGAGTCTCGCGGGGGGAGGAGAGCGATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGCGTGGAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TGTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGC TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG AGGGAGAGGCGCACACTTCTTCGCCTTAT GAACAAAGGTGGCGGGGAGAGCGGA CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATAT ]
[+] EMBL OSR28831A [ tgtGAAACCTTCCCGGCGGCGCGCGANTNTCGCGGGGGGAGGAGAGCGATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACG GTGGAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TNTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGCTTTGCTCCAAGGACCTTGGGATTTGCGCG AGTGCTTGCACTTGTGT ]
[+] EMBL CF196538 [ CCCGGCGGCGCGCGAGTCTCGCGGGGGGAGGAGAGCGATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGCGTGGAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TGTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGC TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG AGGGAGAGGCGCACACTTCTTCGCCTTAT GAACAAAGGTGGCGGGGAGAGCGGA CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGAT ]
[+] EMBL AU063124 [ ATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGTGTGNAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTG CAGCGCTTGCAAGGACCAAATCGANTGGAAGAGAAGATACGGGAAGTACAAGNCTATTCGTTGAGCCGGCAAAATGTCAGAAGTTTTGGGAAACGG ACGTTCCGACA GCGTATTCACAAC ]
[+] EMBL CA756938 [ TTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TGTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGC TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG AGGGAGAGGCGCACACTTCTTCGCCTTAT GAACAAAGGTGGCGGGGAGAGCGGA CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTGTGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGCGGTTTTTCCGGTTTAAAAANAAAAAAAAAANNAANNNNANNNAANAANAAAAAAAAAAAAAAAAAANNAANNNNNNNNNAACCTTGGGGGGGGGCCCGGCCCCAATTCCCCCCTTAA]
[+] EMBL AU031371 [ AAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TGTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGC TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG AGGGAGAGGCGCACACTTCTTCGCCTTAT GAACAAAGGTGGCGGGGAGAGCGGA CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGA ]
[+] EMBL AU031372 [ ATAAGANGTGCTAGGGAGAAGGGAGAGNCGCACACTTCTTCGCCTTATGGAACAAAGTTGNCGGGGAGAGCGGACCCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCNTCTATCAGATGTTTATCAGTGTGTGCTCCNATTCaaaaaa ]
[+] EMBL AA749666 [ TTCCCTGCTGCATGGGTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCC CCAACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCT ]
consensusID : consensus_12142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence
[NCCCAAGGGAATTTNTTGTTAAGAAAGGATTTAANTTTTTAAGAAACCTCCAAGAAAACCCTTGNGCTTTTCGCAAAAAAGGATTTATATAGCCTTATGTGGTGATTTANCATTACATGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTGTGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGCGGTTTTTCCGGTTTAAAAAAAAAAAAAAA]
[+] EMBL AU082712 [NCCCAAGGGAATTTNTTGTTAAGAAAGGATTTAANTTTTTAAGAAACCTCCAAGAAAACCCTTGNGCTTTTCGCAAAAAAGGATTTATATAGCCTTATGTGGTGATTTANCATTACATGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTGTGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGCGGTTTTTCCGGTTTAAAAAAAAAAAAAAA]
consensusID : consensus_12142#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence
[GTGATTTACATTACNTGGTGGGTAATCCCCCCCACTGCGGNAAACAAGTGTATTAGTTTTGGCNGATATATTTCCGTCTNTCNGATGTTTNTCNGTGTGTGCNCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTNGCATATNTTGCGGTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU085780 [GTGATTTACATTACNTGGTGGGTAATCCCCCCCACTGCGGNAAACAAGTGTATTAGTTTTGGCNGATATATTTCCGTCTNTCNGATGTTTNTCNGTGTGTGCNCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTNGCATATNTTGCGGTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12142#0 CAGCGAGAAGGTTTTAAGGGTAGGCGGCGCCGCGGCGGAGGGGGGCTCAGCTCGAGGAGG 60
consensus_12142#1 ------------------------------------------------------------
consensus_12142#2 ------------------------------------------------------------
consensus_12142#0 ACGACGGAAACCTTCCCGGCGGCGCGCGAGTCTCGCGGGGGGAGGAGAGCGATGTCGAAG 120
consensus_12142#1 ------------------------------------------------------------
consensus_12142#2 ------------------------------------------------------------
consensus_12142#0 CGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGCGTGGAAGCCCAACCTCGGGCAGAAG 180
consensus_12142#1 ------------------------------------------------------------
consensus_12142#2 ------------------------------------------------------------
consensus_12142#0 ATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGC 240
consensus_12142#1 ------------------------------------------------------------
consensus_12142#2 ------------------------------------------------------------
consensus_12142#0 CAGCGCTGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTATCGTT 300
consensus_12142#1 ------------------------------------------------------------
consensus_12142#2 ------------------------------------------------------------
consensus_12142#0 GAGCCGGCAAAATGTCAGAAGTGTGGGAAACGGAACGTCCGACAGGCGTATCACAACGTC 360
consensus_12142#1 ------------------------------------------------------------
consensus_12142#2 ------------------------------------------------------------
consensus_12142#0 TGCACGGCTTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGCTGCACTTGTGTTAAAGCG 420
consensus_12142#1 ------------------------------------------------------------
consensus_12142#2 ------------------------------------------------------------
consensus_12142#0 CTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATA 480
consensus_12142#1 ------------------------------------------------------------
consensus_12142#2 ------------------------------------------------------------
consensus_12142#0 AGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTATGAACAAAGGTGGCGGG 540
consensus_12142#1 ------------------------------------------------------------
consensus_12142#2 ------------------------------------------------------------
consensus_12142#0 GAGAGCGGACCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCT 600
consensus_12142#1 ------------------------------------------------------------
consensus_12142#2 ------------------------------------------------------------
consensus_12142#0 GCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAG-ATGAAGA 659
consensus_12142#1 ------------------------------------NCCCAAGGGAATTTNTTGTTAAGA 24
consensus_12142#2 ------------------------------------------------------------
consensus_12142#0 AGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAA 719
consensus_12142#1 AAGGATTT--AANTTTTTAAGAAACCTCCAAGAAAACCCTTGNGCTTTTCG---CAAAAA 79
consensus_12142#2 ------------------------------------------------------------
consensus_12142#0 AGGATTTATATAGCCTTATGTGGTGATTTAC-ATTACATGGTGGGTAATCCCACCCACTG 778
consensus_12142#1 AGGATTTATATAGCCTTATGTGGTGATTTANCATTACATG-TGGGTAATCCCACCCACTG 138
consensus_12142#2 ----------------------GTGATTTAC-ATTACNTGGTGGGTAATCCCCCCCACTG 37
******** ***** ** *********** *******
consensus_12142#0 CGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTG 838
consensus_12142#1 CGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTG 198
consensus_12142#2 CGGNAAACAAGTGTATTAGTTTTGGCNGATATATTTCCGTCTNTCNGATGTTTNTCNGTG 97
*** ********************** *************** ** ******* ** ***
consensus_12142#0 TGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGC 898
consensus_12142#1 TGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGC 258
consensus_12142#2 TGTGCNCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTNGCATATNTTGC 157
***** ****************************************** ****** ****
consensus_12142#0 GGTTTTTCCGGTTTAAAAANAAAAAAAAAANNAANNNNANNNAANAANAAAAAAAAAAAA 958
consensus_12142#1 GGTTTTTCCGGTTTAAAAAAAAAAAAAAA------------------------------- 287
consensus_12142#2 GGTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 217
********* ***** *********
consensus_12142#0 AAAAAANNAANNNNNNNNNAACCTTGGGGGGGGGCCCGGCCCCAATTCCCCCCTTAA 1015
consensus_12142#1 ---------------------------------------------------------
consensus_12142#2 AAAAAAAAAAAAAAAAAAAAAAAA--------------------------------- 241
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||