cluster # 12147

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Oryza sativa
cluster # 12147 cluster # 12147 Sequences # 10 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12147#0 length = 1861 sequences # 10
consensusID : consensus_12147#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1861
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTCCCACAAAATCTTCGGGTTAATATTTCCCTTGAAAATTTCACATGAAAAATGGGGGGATTAATGAAACAACCTTTGCTAGAAAGTACAGAGCAAAAGCAGCACGTTCAGTTCACCCGACCTTGCTGGCAAGTGGCATCACAAGAGTGCACATCTCATGATTCATGATGGCATTCCAACTTAGCTTAAGGTGTCAACTGTCAACAACCCATTGCATAAAGCTGTTCTACAATATATAACTGCTACATTTTAGTCAACCTATACTACAGAAGTATCAGAGTGAGACATCAGCTGCTGATTATGTACACGTTTCAGGCATCCAGTACAACAGTAGCCTGATTTCCAGTACCAGTGCAGTCTAGATATAAAAGGTTTGTGTGCAAAAGAACTCCTAGGTTATACAGAACATTATCCACCATTCATCCTGCACTTGATGTCTGGTAGCGTTCTCCAATACTGATTCAAAGATTGGGGCAGTACTGCAGCCAAAGTACCCCACGATTCAGGCAGAATGCTCAAGATCTCTTCCTCTTTTCGCTCTTTCGCAGACGTCCTCTTCTTCCTTTACGGGGCGTATCATGTATTTGCAGCTTAGCAGCAGCAGTCACAGCAACTGAGCCAACATTTTCCTGAGAAATAAGGCCTGTGGGACATGTGACATTTTTATTTGGTATAACGTTCTCAGAGAATGTATTGTCTTGCATCCTCGCCCTCTTGTAGACCTTTTTTGTTGAAGCACTAGTTGGAATTACGATCACTTTGCC-ATTCCGTAATCGCCTGACTGTACTGCCTTCTGAGCCTTGAGGAACACCAANACTGTGGATTCATCCCTTCATTTGTTTCTAATGCATCCTTAGTACCCAGGTGTGTTAAGGATTTGCCACATTTTGGTGTTGCACAATCTCCTAAGACAGAGGATACATGACTTGTACTATCATTAACTAATAAAGCATCCTGCTCTGCCTTACTCCTCACATACTTTTCTGCAGGAACTACAGATGGTCCTACACTTGATGTTCCATGCTGAACTTTATTCCCATTCTCACATGTATTCATGAGCATACATAAATGCTGGTTATTTTCTTGATCATTACCACATGTTTCACTAGGGGTTGCACGAGGTTCTTCAGGCATGACCATTCTGCCAGTGCAAAACTCCTCAGAAGTGGCCAATGTGCCCATGAAATTAACATTACAATCTGTATTTGCAGTAGGATCCTCAACAGTAGG-CTTCCATTAGAAGAATTAGAAAGCCTCTCGCTAGGAAATCTGTCTGCATCACTTCTAGACCCCTGATATATGTTGAGACCATCCCAAGAGAAAAGTCCCATTGAATATTTTAAGTTTCCCCGCAAAAACTTTTCTATATAATATTCAGTAGATTTTAGTGGAGATTGCGGCTGCTTGTTCATCTCTGCCATGTTTGCATTAATAATATTCTCCCATTGAACCGGAAAGCCAAGTGAGAAGTGTTTGGACACCTCGTCAGGAAATCCATTCAGATGCATTTTAGAAATGTTCGGTGGACGTGCAATCATTATGATGATACCATCTTCAGTCTCAAGGTCACCACTAGCATGCCGTGTTTTAATGGAAGCAGAAGTGAATCTTCTACCAGCTCGACTCGTCGTGGTGTTGGAGCCGACGACGCGGACCTTGCCTTCCTCGCCTTCAACCCTCTCCAGCCACCAGTCGTCGAGCTCGACGCAGGCCTGCAAGTAGGACACGGCGGGGGCCTCCTTCGCCGCCGCCGCCGCCGTCGCGCCGTCGCCGGCTCGGGGTTGGGTCGCCATCTCCGGCGGTGGAGAGGGGAACGAGTTTTCCCCGCTT]

[+] EMBL CF328528             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTCCCACAAAATCTTCGGGTTAATATTTCCCTTGAAAATTTCACATGAAAAATGGGGGGATTAATGAAACAACCTTTGCTTGAAAGTACAGAGCAAAAGCCGCACGTTCAGTTCACCCGACCTTGCTGGCAAGTGGGATTACAAGAGTGCACATCTCATGATTCATGATGGCATTCCAACTTAACTTAAGGGGGCAACTGGCAACAACCCATTGCATAAAGCTGGTCTACAATATATAACTGCTACATTTTAGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA759839             [                                 CCCACAAAATCTTCGTGTTTATATTTCTCTTGAAAATTTCACATGAAAAATGAGGAGATTAATGAAACAACCTTTGCTAGAAAGTACAGAGCAAAAGCAGCACGTTCAGTTCACCCGACCATGCTGGCAAGTGGCATCACAAGAGTGCACATCTCATGATTCATGATGGCATTCCTACTTAGCTTAAGGTGTCAACTGTCAACAACCCATTGCATAAAGCTGTCCTACAATATATAACTGCTACATTTTAGTCAACCTATACTACAGAAGTATCAGAGTGAGACATCAGCTGCTGATTATGTACACGTTTCAGGCATCCAGTACAACAGTAGCCTGATTTCCAGTACCAGTGCAGTCTAGATATAAAAGGTTTGTGTGCAAAAGAACTCCTAGGTTATACAGAACATTATCCACCATTCATCCTGCACTTGATGTCTGGTAGCGTTCTCCAATACTGATTCAAAGATTGGGGTAGTACTGCAGCCAAAGTACCCCACGATTCANGCAGAATGCTCAAGATCTCTTCCTCTTTTCGCTCTTTCGCAGACGTCCTCTTCTTCCTTTACGGNGCGTATCATGTATTTGCAGCTTAGCAGCAGCAGTCACAGCAACTGAGCCAACATTTTCCTGAGAAATAAGGCCTGTGGGACATGTGACATTTTTATTTGGTATAACGTTCTCAGAGAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU225806             [                                                                                           gccgctAAACAACCTTTGCTAGAAAGTACAGAGCAAAAGCAGCACGTTCAGTTCACCCGACCTTGCTGGCAAGTGGCATCACAAGAGTGCACATCTCATGATTCATGATGGCATTCCAACTTAGCTTAAGGTGTCAACTGTCAACAACCCATTGCATAAAGCTGTTCTACAATATATAACTGCTACATTTTAGTCAACCTATACTACAGAAGTATCAGAGTGAGACATCAGCTGCTGATTATGTACACGTTTCAGGCATCCAGTACAACAGTAGCCTGATTTCCAGTACCAGTGCAGTCTAGATATAAAAGGTTTGTGTGCAAAAGAACTCCTAGGTTATACAGAACATTATCCACCATTCATCCTGCACTTGATGTCTGGTAGCGTTCTCCAATACTGATTCAAAGATTGGGGCAGTACTGCAGCCAAAGTACCCCACGATTCAGGCAGAATGCTCAAGATCTCTTCCTCTTTTCGCTCTTTCGCAGACGTTCTCTTCTTCCTTTACGGGGCGTATCATGTATTTGCAGCTTAGCAGCAGCAGTCACAGCAACTGAGCC ACATTTTCCTGAGAAATAAGGCCTGTGGGACATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF327338             [                                                                                                                                                                                   tttttTCTCATGATTCATGATGGCATTCCAACTTAGCTTAAGGTGTCAACTGTCAACAACCCATTGCATAAAGCTGTTCTACAATATATAACTGCTACATTTTAGTCAACCTATACTACAGAAGTATCAGAGTGAGACATCAGCTGCTGATTATGTACACGTTTCAGGCATCCAGTACAACAGTAGCCTGATTTCCAGTACCAGTGCAGTCTAGATATAAAAGGTTTGTGTGCAAAAGAACTCCTAGGTTATACAGAACATTATCCACCATTCATCCTGCACTTGATGTCTGGTAGCGTTCTCCAATACTGATTCAAAGATTGGGGCAGTACTGCAGCCAAAGTACCCCACGATTCAGGCAGAATGCTCAAGACCTCTTCCTCTTTTCGCTCTTTCGCAGACGTCCTCTTCTTCCTTTACGGGGCGTATCATGTATTTGCAGCTTAGCAGCAGCAGTCACAGCAACTGAGCCAACATTTTCCTGAGAAATAAGGCCTGTGGGACATGTGACATTTTTATTTGGTATAACGTTCTCAGAGAATGTATTGTCTTGCATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL C96753               [                                                                                                                                                                                         ttttttgTTCA GNTGGCATTCCAACTTAGCTTAAGGTGTCAACTGTCAACAACCCATTGCATAAAGCTGTTCTACAATATATAACTGCTACATTTTAGTCAACCTATACTACAGAAGTATCAGAGTGAGACATCAGCTGCTGATTATGTACACGTTTCAGGCATCCAGTACAACAGTAGCCTGATTTCCAGTACCAGTGCAGTCTAGATATAAAAGGTTTGTGTGCAAAAGAACTCCTAGGTTATACAGAACATTATCCACCATTCATCCTGCACTTGATGTCTGGTAGCGTTCTCCAATACTGATTCAAAGATTGGGGCAGTACTGCAGCCAAAGTACCCCACGATTCAGGCAGAATGCTCAAGATCTCTTCCTCTTTTCGCTCTTTCGCAGACGTCCTCTTCTTCCTTTACGGGGCGTATCATGTATTTGCAGCTTAGCAGCAGCAGTCACAGCAACTGAGCCAACATTTTCCTGAGAAATAAGGCCTGTGGGACATGTGACATTTTTATTTGGTATAACGTTCTCAGAGAATGTATTGTCTTGNAACCTCGCCCTCTTGTAGACCTTTTTTGTTGAAGCACTAGTTGGAATTACGATCACTTTGCCAATTCCGTAATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CF327337             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTATCATGTATTTGCAGCTTAGCAGCAGCAGTCACAGCAACTGAGCCAACATTTTCCTGAGAAATAAGGCCTGTGGGACATGTGACATTTTTATTTGGTATAACGTTCTCAGAGAATGTATTGTCTTGCATCCTCGCCCTCTTGTAGACCTTTTTTGTTGAAGCACTAGTTGAAATTACGATCACTTTGCC ATTCCGTAATCGCCTGACTGTACTGCCTTCTGAGCCTTGAGGAACACCAANACTGTGGATTCATCCCTTCATTTGTTTCTAATGCATCCTTAGTACCCAGGTGTGTTAAGGATTTGCCACATTTTGGTGTTGCACAATCTCCTAAGACAGAGGATACATGACTTGTACTATCATTAACTAATAAAGCATCCTGCTCTGCCTTACTCCTCACATACTTTTCTGCAGGAACTACAGATGGTCCTACACTTGATGTTCCATGCTGAACTTTATTCCCATTCTCACATGTATTCATGAGCATACATAAATGCTGGTTATTTTCTTGATCATTACCACATGTTTCACTAGGGGTTGCACGAGGTTCTTCAGGCATGACCATTCTGCCAGTGCAAAACTCCTCAGAAGTGGCCAATGTGCCCATGAAATTAACATTACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL AF074786             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     caACATGTTTCATTA GGGTTGCAGGA GTTTTTCAGGCATGTCCATTCTGCCAGTGCAAAANTCTTCAGAAGTGGCCAATGTGCCCATGAAATTAACATTACAATCTGTATTTGCAGTAGGATCTTCAACAGTAGGTCTTCCATTAGAAGAATTAGAAAGCNTCTCGNTAGGAAATCTGTNTGCATCANTTCTAGACCCCTGATATATGTTGAGACCATCCCAAGAGAAAAGTCCCATTGAATATTTTAAGTTTCCCCGCAAAAACTTTTNTATATAATATTCAGTAGATTTTAGTGGAGATTGCGGCTGCTTGTTCATNTCTGCCATGTTTGCATTAATAATATTCTCCCATTGAACCGGAAAGCCAAGTGAGAAGTGTTTGGACACCTCGTCAGGAAATCCATTCAGATGCATTTTAGAAATGTTCGGTGGACGTGCAATCATTATGATGATACCATCTTCAGTCTCAAGGTCACCACTAGCATGCCGTGTTTTAATGGAAGCAGAAGTGAATCTTCTACCAGCTCGACTCGTCGTGGTGTTGGAGCCGACGACGCGGACCTTGCCTTCCTCGCCTTCAACCCTCTCCAGCCACCAGTCGTCGAGCTCGACGCAGGCCTGCAAGTAGGACACGGCGGGGGCCTCCTTCGCCGCCGCCGCCGC   CGCGCCGTCGCCGGCTCGGGGTTGG                                             ]
[-] EMBL C26490               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ctnaGCATGNCCATTCTGCCAGTGC AAACTCCTCAGAAGTGGCCAATGTGCCCATG AATTAACATTACAATCTGTATTTGCAGTAGGATCCTCAACAGTAGG CCTCCATTAGAAGAATTAGAAAGCCTCTCGCTAGGAAATCTGTCTGCATCACTTCTAGACCCCTGATATATGTTGAGACCATCCCAAGAGAAAAGTCCCATTGAATATTTTAAGTTTCCCCGCAAAAACTTTTCTATATAATATTCAGTAGATTTTAGTGGAGATTGCGGCTGCTTGTTCATCTCTGCCATGTTTGCATTAATAATATTCTCCCATTGAACCGGAAAGCCAAGTGAGAAGTGTTTGGACACCTCGTCAGGAAATCCATTCAGATGCATTTTAGAAATGTTCGGTGGACGTGCAATCATTATGATGATACCATCTTCAGTCTCAn                                                                                                                                                                                                                                                                          ]
[-] EMBL AK111105             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATTACAATCTGTATTTGCAGTAGGATCCTCAACAGTAGGTCTTCCATTAGAAGAATTAGAAAGCCTCTCGCTAGGAAATCTGTCTGCATCACTTCTAGACCCCTGATATATGTTGAGACCATCCCAAGAGAAAAGTCCCATTGAATATTTTAAGTTTCCCCGCAAAAACTTTTCTATATAATATTCAGTAGATTTTAGTGGAGATTGCGGCTGCTTGTTCATCTCTGCCATGTTTGCATTAATAATATTCTCCCATTGAACCGGAAAGCCAAGTGAGAAGTGTTTGGACACCTCGTCAGGAAATCCATTCAGATGCATTTTAGAAATGTTCGGTGGACGTGCAATCATTATGATGATACCATCTTCAGTCTCAAGGTCACCACTAGCATGCCGTGTTTTAATGGAAGCAGAAGTGAATCTTCTACCAGCTCGACTCGTCGTGGTGTTGGAGCCGACGACGCGGACCTTGCCTTCCTCGCCTTCAACCCTCTCCAGCCACCAGTCGTCGAGCTCGACGCAGGCCTGCAAGTAGGACACGGCGGGGGCCTCCTTCGCCGCCGCCGCCGCCGTCGCGCCGTCGCCGGCTCGGGGTTGGGTCGCCATCTCCGGCGGTGGAGAGGGGAACGAGTTTTCCCCGCTT]
[-] EMBL OSC106451            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGATGCATTTTAGAAATGTTCGGTGNACGTGCAATCATTATGATGATACCATCTTCAGTCTCAAGGTCACCACTAGCATGCCGTGTTTTAATGGAAGCAGAAGTGAATCTTCTACCAGCTCGACTCGTCGTGGTGTTGGAGCCGACNACGCGGACCTTGCCTTCCTCGCCTTCAACCCTCTCCAGCCACCAGTCGTCGAGCTCNACGCAGGCCTGCAAGTAGGACACGGCGGGGGCCTCCTTCGCCGCCGCCGCCGCCGCCGCG CGTCGCCGGCTCGGGGTTGGGTCGCCATCTCCGGCGGTGGAGAG                     ]




>consensus_12147#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTCCCACAAAATCTTCGGGTTAATATTTC
CCTTGAAAATTTCACATGAAAAATGGGGGGATTAATGAAACAACCTTTGCTAGAAAGTAC
AGAGCAAAAGCAGCACGTTCAGTTCACCCGACCTTGCTGGCAAGTGGCATCACAAGAGTG
CACATCTCATGATTCATGATGGCATTCCAACTTAGCTTAAGGTGTCAACTGTCAACAACC
CATTGCATAAAGCTGTTCTACAATATATAACTGCTACATTTTAGTCAACCTATACTACAG
AAGTATCAGAGTGAGACATCAGCTGCTGATTATGTACACGTTTCAGGCATCCAGTACAAC
AGTAGCCTGATTTCCAGTACCAGTGCAGTCTAGATATAAAAGGTTTGTGTGCAAAAGAAC
TCCTAGGTTATACAGAACATTATCCACCATTCATCCTGCACTTGATGTCTGGTAGCGTTC
TCCAATACTGATTCAAAGATTGGGGCAGTACTGCAGCCAAAGTACCCCACGATTCAGGCA
GAATGCTCAAGATCTCTTCCTCTTTTCGCTCTTTCGCAGACGTCCTCTTCTTCCTTTACG
GGGCGTATCATGTATTTGCAGCTTAGCAGCAGCAGTCACAGCAACTGAGCCAACATTTTC
CTGAGAAATAAGGCCTGTGGGACATGTGACATTTTTATTTGGTATAACGTTCTCAGAGAA
TGTATTGTCTTGCATCCTCGCCCTCTTGTAGACCTTTTTTGTTGAAGCACTAGTTGGAAT
TACGATCACTTTGCCATTCCGTAATCGCCTGACTGTACTGCCTTCTGAGCCTTGAGGAAC
ACCAANACTGTGGATTCATCCCTTCATTTGTTTCTAATGCATCCTTAGTACCCAGGTGTG
TTAAGGATTTGCCACATTTTGGTGTTGCACAATCTCCTAAGACAGAGGATACATGACTTG
TACTATCATTAACTAATAAAGCATCCTGCTCTGCCTTACTCCTCACATACTTTTCTGCAG
GAACTACAGATGGTCCTACACTTGATGTTCCATGCTGAACTTTATTCCCATTCTCACATG
TATTCATGAGCATACATAAATGCTGGTTATTTTCTTGATCATTACCACATGTTTCACTAG
GGGTTGCACGAGGTTCTTCAGGCATGACCATTCTGCCAGTGCAAAACTCCTCAGAAGTGG
CCAATGTGCCCATGAAATTAACATTACAATCTGTATTTGCAGTAGGATCCTCAACAGTAG
GCTTCCATTAGAAGAATTAGAAAGCCTCTCGCTAGGAAATCTGTCTGCATCACTTCTAGA
CCCCTGATATATGTTGAGACCATCCCAAGAGAAAAGTCCCATTGAATATTTTAAGTTTCC
CCGCAAAAACTTTTCTATATAATATTCAGTAGATTTTAGTGGAGATTGCGGCTGCTTGTT
CATCTCTGCCATGTTTGCATTAATAATATTCTCCCATTGAACCGGAAAGCCAAGTGAGAA
GTGTTTGGACACCTCGTCAGGAAATCCATTCAGATGCATTTTAGAAATGTTCGGTGGACG
TGCAATCATTATGATGATACCATCTTCAGTCTCAAGGTCACCACTAGCATGCCGTGTTTT
AATGGAAGCAGAAGTGAATCTTCTACCAGCTCGACTCGTCGTGGTGTTGGAGCCGACGAC
GCGGACCTTGCCTTCCTCGCCTTCAACCCTCTCCAGCCACCAGTCGTCGAGCTCGACGCA
GGCCTGCAAGTAGGACACGGCGGGGGCCTCCTTCGCCGCCGCCGCCGCCGTCGCGCCGTC
GCCGGCTCGGGGTTGGGTCGCCATCTCCGGCGGTGGAGAGGGGAACGAGTTTTCCCCGCT
T
clustalw multiple alignements is not computed in this case