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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2891 fasta sequence
[CACTCCTCCCCTCTTCCACCCTCCCCCCACCTCGTCGCCTCGCCGTCTCCACCCCCAAAACCCTAGCCGCCGCCGCGCTCCTCCTCCTCCGCCGCCGCCCGGCGCCGCCCGCGGCCATGGATCTCCTCCGCTCGCACCTCCACAAGGTCCGCATCCCGGAGCCCGGCAGCCGCATCCACAAGGACGAGTGCTGCGTCTCCTTCGACACCCCGAGGTCGGAGGGTGGGCTGTACGTCGACATGACCTCGTTCCTGGGGTTCGGGAGGGAGCACGTGGCGTGGAACTACGAGAAGAGTGGGAACCCCGTGTACCTCCACATCGTGCAGCGCCGGAAGCCGGAGCCCGACGACGAGGCGGATCGCCCGCTGAAGAAGCCCACGCTACTCGCCATCGGAGTGGAGGGAGGTTTCACTGATCAAGAACCCGAATACGATGAGGCTTTTGAAATTGTTATCTTGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAGGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATGCTATGGATCTGAAGCAGCTAGACAATGGTGTCATTGTGCCACCTACAGGATGGAAGTGCAGCAAGTGTGATAAAACTGAGAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGT-GGGGGGAATAATCATGCTATTGAACACTACGAACAGACTAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAG-----CAGACGTTTTCTCATACCCAGAAGATGATAGCGT-TGAAGATCCACTATTAGCGCAG-CATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGAACTTTTATACGGCCCTGGTTATACTGGCCTTGTAAATCTTGGAAATAGTTGCTATATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACGCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGATCCAACATTGGACTTGAACATGCAAATGACAAAGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGGGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAGGATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAACACCGGAAACCATGAGCTGAATCCTTTTACAGGGTTCAAATTCTTCATTGAGGAGCGTCTTCAATGCCCTTCTGGAAAAGTCTCCTATAACAAACGTTCTGACTACATTCTTTCTTTGAACATACCGTTACATGAAGCTACTAACAAAGAGCAGCTAGAAGCATTTCATGAGAAGAAAGCTGCAATGGATTTGGATGGAAAGGAAGTGTCTAATGAGGAAATTGTGAGGCCTAGAGTCCCACTGGAGGCATGCTTAGCAAGTTTTTCAGGCGCGGAGGAAGTGCCTGAATTTTACAGCACTGCATTGAATTCAAAGACAACAGCAATTAAGACTGCTGGCTTTAAAACATTTCCTGATTACCTGGTGTTGCAGATGCGCAAGTTTGTAATGGAAGCAGGATGGGTGCCAAAGAAACTAGATGTATACGTAGATGTGCCAGATATAATTGATATCTCGCACATGCGCAGCGAAGGCATACAGCCTGGTGAAGAGCTACTACCTGAAGGAGCTTCTGGTGATAACAAAGCTGAACCTGTTCATCCTGTTGCCAGTGAGGACATTGTATCTCAGCTGGCAAGCATGGGGTTCAATTATCTTCATTGCCAGAAAGCTGCTATTAGTACATCAAACACAGGAGTTGAGGAGGCGATGAGTTGGCTTCTCTCACACATGGATGATCCAGATATCAACGATCCAATATCTAAAGATTCACAGGCTGCTGAACAAACTGTTGATGAAACTAGCGTTCAAACTCTTGTTTCCTTCGGATTTCAAGAAGATGTTGCTCGAAAGGCCTTGGCAGCTTCTGGTGGAAATATCGAGAGAGCAACAGACTGGATTTTTAGCCACCCTGAGGCTTTTAGCTCAGTACCTACTGATTCTTCAACAAG-CAATATGG-AAGATGATGATGCACACATACCAGATGGAAGTGGCAGATA-CAAATTGATGGCGTTTGTGAGCCATATGGGCACCTCTACCCATTGTGGGCACTACGTTGCCCATGTCCTCAAAGACGGGAGGTGGGTAATATTCAATGATAGTAAGGTTGCTGCCTCTGTCGACTTGCCCAAGGATATGGGATACCTGTATTTCTTTCAAAGGATATAAAGCATTAGCAGCTGAAAGACTTCACAGGCAAGAAATACATTCGCTCGCTGACTTGAGTCTTAGTTATGGGCACCTATGATCAAAAGCACGGC--GGATAGTCGGTGAACTTGCATGCAGATGGACTTAGAGCGAGTGTTGGTCACATCCTGTCGTGCTGACTTTAGACTGATCGATCAGCTGGGATATCACTTTGTTCCATGGCATTATGCATTGGCACATTCAATTCTTCTTTGTCGATCTATCATCTTAGCGTTAACATTCTGCCATGAAAACTTTGGACTGGCTCAACTTTTTACATATGAAATGGAAAACAAAAGGCAAGGGACGGTCCCTGATGCCGCATAAAAAATTTGCACATTGTAGCAGAGCGCTGGGTGTTAAAAGATTGGT]
[+] EMBL AK103230 [CACTCCTCCCCTCTTCCACCCTCCCCCCACCTCGTCGCCTCGCCGTCTCCACCCCCAAAACCCTAGCCGCCGCCGCGCTCCTCCTCCTCCGCCGCCGCCCGGCGCCGCCCGCGGCCATGGATCTCCTCCGCTCGCACCTCCACAAGGTCCGCATCCCGGAGCCCGGCAGCCGCATCCACAAGGACGAGTGCTGCGTCTCCTTCGACACCCCGAGGTCGGAGGGTGGGCTGTACGTCGACATGACCTCGTTCCTGGGGTTCGGGAGGGAGCACGTGGCGTGGAACTACGAGAAGAGTGGGAACCCCGTGTACCTCCACATCGTGCAGCGCCGGAAGCCGGAGCCCGACGACGAGGCGGATCGCCCGCTGAAGAAGCCCACGCTACTCGCCATCGGAGTGGAGGGAGGTTTCACTGATCAAGAACCCGAATACGATGAGGCTTTTGAAATTGTTATCTTGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAGGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATGCTATGGATCTGAAGCAGCTAGACAATGGTGTCATTGTGCCACCTACAGGATGGAAGTGCAGCAAGTGTGATAAAACTGAGAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGT GGGGGGAATAATCATGCTATTGAACACTACGAACAGACTAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAG CAGACGTTTTCTCATACCCAGAAGATGATAGCGT TGAAGATCCACTATTAGCGCAG CATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGAACTTTTATACGGCCCTGGTTATACTGGCCTTGTAAATCTTGGAAATAGTTGCTATATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACGCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGATCCAACATTGGACTTGAACATGCAAATGACAAAGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGGGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAGGATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAACACCGGAAACCATGAGCTGAATCCTTTTACAGGGTTCAAATTCTTCATTGAGGAGCGTCTTCAATGCCCTTCTGGAAAAGTCTCCTATAACAAACGTTCTGACTACATTCTTTCTTTGAACATACCGTTACATGAAGCTACTAACAAAGAGCAGCTAGAAGCATTTCATGAGAAGAAAGCTGCAATGGATTTGGATGGAAAGGAAGTGTCTAATGAGGAAATTGTGAGGCCTAGAGTCCCACTGGAGGCATGCTTAGCAAGTTTTTCAGGCGCGGAGGAAGTGCCTGAATTTTACAGCACTGCATTGAATTCAAAGACAACAGCAATTAAGACTGCTGGCTTTAAAACATTTCCTGATTACCTGGTGTTGCAGATGCGCAAGTTTGTAATGGAAGCAGGATGGGTGCCAAAGAAACTAGATGTATACGTAGATGTGCCAGATATAATTGATATCTCGCACATGCGCAGCGAAGGCATACAGCCTGGTGAAGAGCTACTACCTGAAGGAGCTTCTGGTGATAACAAAGCTGAACCTGTTCATCCTGTTGCCAGTGAGGACATTGTATCTCAGCTGGCAAGCATGGGGTTCAATTATCTTCATTGCCAGAAAGCTGCTATTAGTACATCAAACACAGGAGTTGAGGAGGCGATGAGTTGGCTTCTCTCACACATGGATGATCCAGATATCAACGATCCAATATCTAAAGATTCACAGGCTGCTGAACAAACTGTTGATGAAACTAGCGTTCAAACTCTTGTTTCCTTCGGATTTCAAGAAGATGTTGCTCGAAAGGCCTTGGCAGCTTCTGGTGGAAATATCGAGAGAGCAACAGACTGGATTTTTAGCCACCCTGAGGCTTTTAGCTCAGTACCTACTGATTCTTCAACAAG CAATATGG AAGATGATGATGCACACATACCAGATGGAAGTGGCAGATA CAAATTGATGGCGTTTGTGAGCCATATGGGCACCTCTACCCATTGTGGGCACTACGTTGCCCATGTCCTCAAAGACGGGAGGTGGGTAATATTCAATGATAGTAAGGTTGCTGCCTCTGTCGACTTGCCCAAGGATATGGGATACCTGTATTTCTTTCAAAGGATATAAAGCATTAGCAGCTGAAAGACTTCACAGGCAAGAAATACATTCGCTCGCTGACTTGAGTCTTAGTTATGGGCACCTATGATCAAAAGCACGGC GGATAGTCGGTGAACTTGCATGCAGATGGACTTAGAGCGAGTGTTGGTCACATCCTGTCGTGCTGACTTTAGACTGATCGATCAGCTGGGATATCACTTTGTTCCATGGCATTATGCATTGGCACATTCAATTCTTCTTTGTCGATCTATCATCTTAGCGTTAACATTCTGCCATGAAAACTTTGGACTGGCTCAACTTTTTACATATGAAATGGAAAACAAAAGGCAAGGGACGGTCCCTGATGCCGCATATATATTTTGCACATTGTAGCAGAGCGCTGGGTGTTAAAAGATTGGT]
[+] EMBL CF306358 [ ACGAGTGCTGCGTCTCCTTCGACACCCCGAGGTCGGAGGGTGGGCTGTACGTCGACATGACCTCGTTCCTGGGGTTCGGGAGGGAGCACGTGGCGTGGAACTACGAGAAGAGTGGGAACCCCGTGTACCTCCACATCGTGCAGCGCCGGAAGCCGGAGCCCGACGACGAGGCGGATCGCCCGCTGAAGAAGCCCACGCTACTCGCCATCGGAGTGGAGGGAGGTTTCACTGATCAAGAACCCGAATACGATGAGGCTTTTGAAATTGTTATCTTGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAGGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATGCTATGGATCTGAAGCAGCTAGACAATGGTGTCATTGTGCCACCTACAGGATGGAAGTGCAGCAAGTGTGATAAAACTGAGAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGTGGGGGGGAATAATCATGCTATTGAACACTACGAACAGACTAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAG CAGACGTTTTCT ]
[+] EMBL CF306233 [ GCCATCGGAGTGGAGGGAGGTTTCACTGATCAAGAACCCGAATACGATGAGGCTTTTGAAATTGTTATCTTGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAGGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATGCTATGGATCTGAAGCAGCTAGACAATGGTGTCATTGTGCCACCTACAGGATGGAAGTGCAGCAAGTGTGATAAAACTGAGAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGT GGGGGGAATAATCATGCTATTGAACACTACGAACAGACTAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGCTCAGACGTTTTCTCATACCCAGAAGATGATAGCGTNTGAAGATCCACTATTAGCGCAG CATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGA ]
[+] EMBL OSS13586A [ ACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATGCTATGGNTCTGAAGCAGCTAGATAATGGTGTCATTGTGCCACCTACAGGATGGAAGTGCAGCAAGTGTGATAAAACTGAGAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGT GGGGGGAATAATCATGCTATTGAACACTACGAACAGACTAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAG CAGACGTTTTCTCATACCCAGAAGATGATAGCGT TGAAG TCCACTATTAGCGCAG ATTTGTCACATTTTGGTATTGATTTNTCTTCACTCCAAAAGACCGAGATGACTACTGCTG AAGAGAGCTTTATCACAA ]
[+] EMBL OSS12351A [ ACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATGCTATGGATCTGAAGCAGCTAGATAATGGTGTCATTGTGCCACCTACAGGATGGAAGTGCAGCAAGTGTGATAAAACTGAGAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGT GGGGGGAATAATCATGCTATTGAACACTACGAACAGACTAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAG CAGACGTTTTCTCATACCCAGAAGATGATAGCGT TGAAGATCCACTATTAGCG AGATTTTTGTCACATTTTGG ]
[+] EMBL CB627195 [ GATAACCCTGAAAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGT GGGGGGAATAATCATGCTATTGAACACTTCGAACAGACCAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTGGAAGCAG CAGACGTTTTCTCATACCCAGAAGATGATAGCGT TGAAGATCCACTATTATCGCAG CATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGACCGAGATGACTACTGCTGAAAGATAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGAACTTTTATACGGCCCTGGTTATACTGGCCTTGTAAATCTTGGAAATAGTTGCTATATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACGCTACTTTGAGAAGCATAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGATCCAACATTGGACTTGAACATGCAAATGACAAAGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGGGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGATGCAACAGGATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAACACCGGAAACCATGA ]
[+] EMBL CF303078 [ AATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAG CAGACGTTTTCTCATACCCAGAAGATGATAGCGT TGAAGATCCACTATTAGCGCAG CATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGAACTTTTATACGGCCCTGGTTATACTGGCCTTGTAAATCTTGGAAATAGTTGCTATATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACGCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGATCCAACATTGGACTTGAACATGCAAATGACAAAGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGGGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGCAT ]
[-] EMBL CB627196 [ GTTCAATTATCTTCATTGCCAGAAAGCTGCTATTAGTACATCAAACACAGGAGTTGAGGAGGCGATGAATTGGCTTCTCTCACACATGGATGATTCAGATATCAACGATCCAATATCTAAAGATTCACAGGCTGCTGAACAAACTGTTGATGAAACTAGCGTTCAAACTCTTGTTTCCTTCGGATTTCAAGAAGATGTTGCTCGAAAGGCCTTGGCAGCTTCTGGTGGAAATATCGAGAGAGCAACAGACTGGATTTTTAGCCACCCTGAGGCTTCTAGCTCAGTACCTACTGATTCTTCAACAAG CAATATGG AAGATGATGATGCACACATACCAGATGGAAGTGGCAGATA CAAATTGATGGCGTTTGTGAGCCATATGGGCACCTCTACCCATTGTGGGCACTACGTTGCCCATGTCCTCAAAGACGGGAGGTGGGTAATATTCAATGATAGTAAGGTTGCTGCCTCTGTCGACTTGCCCAAGGATATGGGATACCTGTATTTCTTTCAAAGGATATAAAGCATTAGCAGCTGAAAGACTTCACAGGCAAGAAATACATTCGCTCGCTGACTTGAGTCTTAGTTATGGGCACCTATGATCAAAAGCACGGCGGGGATAGTCGGTGAACTTGCATGCAGATGGACTTAGAGCGAGTGTTGGTCACATCCTGTCGTGCTGACTTTAGACTGATCGATCAGCTGGGATATCACTTTGTTCCATGGCATTATGCATTGGCACATTCAATTCATCTTTGTCGATCTATCATCTTAGCGTTAACATTCTGCCA ]
[+] EMBL AU032695 [ CTCGAAAGCCCTTGGCAGCTTCTGGTGG AATNTCGAGAGNGCAACAGACTGGATTTTTNGCCNCCCTGAGGCTTTTAGCTCAGTACCTACTGATTCTTCAACAAG CAATATGG AAGATGATGATGCACACATACCAGATGGAAGTGGCAGATA CAAATTGATNGCGTTTGTGAGCCATATGGGCACCTCTACCCATTGTGGGC CTACGTTNCCCATGTCCTCAAAGACGGGAGGTGGGTAATATTCAATGATAGTAAGGTTGCTGCCTCTGTCGACTTGCCCAAGGATATGGGATNCCTGTATTTCTTTCAAAGGATATAAAGCATTAGCAGCTGAAAGACTTCACAGGCAAGAAATACATTCGCTCGCTGACTTGAGTCTTAGTTATGGGCACCTATGATCAAAAGCACGGC GGATAGTCGGTGAACTTGCATGCAGATGGACTTAGAGCGAGTGTTGGTCACATCCTGTCGTGCTGACTTTAGACTGATCGATCAGCTGGGATATCACTTTGTTCCATGGCATTATGCATTGGCACATTCAATTCTTCTTTGTCGATCTATCATCTTAGCGTTAACATTCTGCCATGAAAACTTTGGACTGGCTCAACTTTTTACATATGAAATGGAAAACAAAAGGCAAGGGACGGTCCCTGATGCCGCATAAAAAA ]
[+] EMBL AU108292 [ cCAACAAGCCAATATGGAAAGATGATGATGCCCACATACCAGATGGAAGTGCCAGANACCAAATTGATGGCGTTTNTGAGCCATATGGGCACCTCTACCCATTGTGGGCA TACGTTNCCCATGTCCTCAAAGACGGGAGGTGGGTAATATTCAATGATAGTAAGGTTGCTGCCTCTGTCGACTTGCCCAAGGATATGGGATACCTGTATTTCTTTCAAAGGATATAAAGCATTAGCAGCTGAAAGACTTCACAGGCAAGAAATACATTCGCTCGCTGACTTGAGTCTTAGTTATGGGCACCTATGATCAAAAGCACGGC GGATAGTCGGTGAACTTGCATGCAGATGGACTTAGAGCGAGTGTTGGTCACATCCTGTCGTGCTGACTTTAGACTGATCGATCAGCTGGGATATCACTTTGTTCCATGGCATTATGCATTGGCACATTCAATTCTTCTTTGTCGATCTATCATCTTAGCGTTAACATTCTGCCATGAAAACTTTGGACTGGCTCAACTTTTTACATATGAAATGGAAAACAAAAGGCAAGGGACGGTCCCTGATGCCGCATAAAAAA ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||